Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G103800 Populus trichocarpa HOM05D004725 ORTHO05D005683 6.0e-118 427.6 221 100.0
Sabra08G0078400 Salix brachista HOM05D004725 ORTHO05D005683 2.4e-114 415.6 221 96.8
Manes.03G206000 Manihot esculenta HOM05D004725 ORTHO05D005683 3.4e-105 385.2 222 88.7
SHI00123 Sapria himalayana HOM05D004725 ORTHO05D005683 2.5e-84 315.8 218 72.0
TPR.G27119 Trifolium pratense HOM05D004725 ORTHO05D005683 7.7e-73 277.7 220 63.6
Phvul.010G140100 Phaseolus vulgaris HOM05D004725 ORTHO05D005683 1.3e-72 276.9 220 64.1
VMungo0331G0107 Vigna mungo HOM05D004725 ORTHO05D005683 2.9e-72 275.8 220 64.1
AL8G22680 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 2.7e-70 269.2 221 63.3
Lj3g0003769 Lotus japonicus HOM05D004725 ORTHO05D005683 1.0e-69 267.3 214 62.1
THA.LOC104827096 Tarenaya hassleriana HOM05D004725 ORTHO05D005683 1.0e-69 267.3 217 64.1
AT5G49010 Arabidopsis thaliana HOM05D004725 ORTHO05D005683 1.4e-69 266.9 221 62.4
Carub.0008s0897 Capsella rubella HOM05D004725 ORTHO05D005683 1.4e-69 266.9 220 61.8
Glyma.08G194400 Glycine max HOM05D004725 ORTHO05D005683 5.2e-69 265.0 220 61.4
Psat1g138600 Pisum sativum HOM05D004725 ORTHO05D005683 5.2e-69 265.0 221 60.2
GSVIVG01034975001 Vitis vinifera HOM05D004725 ORTHO05D005683 5.2e-69 265.0 218 63.8
Carub.0008s0882 Capsella rubella HOM05D004725 ORTHO05D005683 6.7e-69 264.6 220 61.8
CiPaw.02G073900 Carya illinoinensis HOM05D004725 ORTHO05D005683 4.4e-68 261.9 222 62.6
Thhalv10004892m.g Eutrema salsugineum HOM05D004725 ORTHO05D005683 4.4e-68 261.9 210 63.3
Aa31LG11G8130 Aethionema arabicum HOM05D004725 ORTHO05D005683 7.4e-68 261.2 210 63.3
Sp2g19380 Schrenkiella parvula HOM05D004725 ORTHO05D005683 7.4e-68 261.2 210 63.8
Potri.010G147050 Populus trichocarpa HOM05D004725 ORTHO05D005683 2.8e-67 259.2 218 66.1
BolC7t44486H Brassica oleracea HOM05D004725 ORTHO05D005683 3.7e-67 258.8 210 62.4
AL8G22360 Arabidopsis lyrata HOM05D004725 ORTHO05D005683 6.3e-67 258.1 238 58.4
C07p39630 Brassica napus HOM05D004725 ORTHO05D005683 2.4e-66 256.1 210 62.4
CANSAT35G1772 Cannabis sativa HOM05D004725 ORTHO05D005683 3.1e-66 255.8 221 60.2
Nn3g21748 Nelumbo nucifera HOM05D004725 ORTHO05D005683 5.3e-66 255.0 211 63.0
A06p38630 Brassica napus HOM05D004725 ORTHO05D005683 1.2e-65 253.8 210 61.9
BraA06t26778Z Brassica rapa HOM05D004725 ORTHO05D005683 1.2e-65 253.8 210 61.9
CSS0037380 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.2e-65 253.8 214 61.7
RcHm_v2.0_Chr4g0425721 Rosa chinensis HOM05D004725 ORTHO05D005683 2.0e-65 253.1 221 61.1
CARHR056790 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.6e-65 252.7 213 62.0
Ciclev10005849m.g Citrus clementina HOM05D004725 ORTHO05D005683 4.5e-65 251.9 216 62.0
Eucgr.D00314 Eucalyptus grandis HOM05D004725 ORTHO05D005683 4.5e-65 251.9 215 60.0
CsaV3_3G008790 Cucumis sativus L. HOM05D004725 ORTHO05D005683 5.9e-65 251.5 222 60.4
Sed0009995 Sechium edule HOM05D004725 ORTHO05D005683 5.9e-65 251.5 222 60.4
ClCG05G001400 Citrullus lanatus HOM05D004725 ORTHO05D005683 7.7e-65 251.1 222 60.8
Cc00_g03440 Coffea canephora HOM05D004725 ORTHO05D005683 1.0e-64 250.8 214 62.1
FvH4_4g13700 Fragaria vesca HOM05D004725 ORTHO05D005683 1.3e-64 250.4 219 60.7
Lsat_1_v5_gn_8_139661 Lactuca sativa HOM05D004725 ORTHO05D005683 2.2e-64 249.6 214 60.3
Aqoxy6G02121 Aquilegia oxysepala HOM05D004725 ORTHO05D005683 5.0e-64 248.4 207 64.3
DCAR_030461 Daucus carota HOM05D004725 ORTHO05D005683 6.5e-64 248.1 211 61.1
QL06p012630 Quercus lobata HOM05D004725 ORTHO05D005683 6.5e-64 248.1 188 65.4
Medtr2g044210 Medicago truncatula HOM05D004725 ORTHO05D005683 8.5e-64 247.7 212 59.9
Oeu038772.1 Olea europaea HOM05D004725 ORTHO05D005683 3.2e-63 245.7 220 61.4
arahy.Tifrunner.gnm1.ann1.ASV3U0 Arachis hypogaea HOM05D004725 ORTHO05D005683 7.2e-63 244.6 264 51.1
Migut.G00073 Erythranthe guttata HOM05D004725 ORTHO05D005683 7.2e-63 244.6 215 60.5
Dinv15152 Davidia involucrata HOM05D004725 ORTHO05D005683 9.4e-63 244.2 191 63.4
FAN07G1636 Fragaria x ananassa HOM05D004725 ORTHO05D005683 9.4e-63 244.2 221 60.2
MSTRG.3853 Avicennia marina HOM05D004725 ORTHO05D005683 3.6e-62 242.3 214 58.9
Nitab4.5_0000160g0190 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.6e-62 242.3 227 58.1
TAR376G0735 Trochodendron aralioides HOM05D004725 ORTHO05D005683 3.6e-62 242.3 211 61.1
PGSC0003DMG400007347 Solanum tuberosum HOM05D004725 ORTHO05D005683 8.0e-62 241.1 220 59.1
COL.COLO4_09634 Corchorus olitorius HOM05D004725 ORTHO05D005683 2.3e-61 239.6 224 58.9
Solyc11g065900.2 Solanum lycopersicum HOM05D004725 ORTHO05D005683 2.3e-61 239.6 220 59.1
Sopen11g025640 Solanum pennellii HOM05D004725 ORTHO05D005683 2.3e-61 239.6 220 59.1
SGA_v2.0_scaffold157G37322 Striga asiatica HOM05D004725 ORTHO05D005683 2.3e-61 239.6 215 58.6
Gohir.A10G173400 Gossypium hirsutum HOM05D004725 ORTHO05D005683 5.2e-61 238.4 227 57.7
SalBow8G1743 Salvia bowleyana HOM05D004725 ORTHO05D005683 5.2e-61 238.4 215 58.1
Glyma.07G011200 Glycine max HOM05D004725 ORTHO05D005683 8.8e-61 237.7 207 58.9
Gohir.D10G179900 Gossypium hirsutum HOM05D004725 ORTHO05D005683 8.8e-61 237.7 227 58.1
COL.COLO4_34597 Corchorus olitorius HOM05D004725 ORTHO05D005683 1.5e-60 236.9 183 67.2
Duzib212G0103 Durio zibethinus HOM05D004725 ORTHO05D005683 2.6e-60 236.1 227 57.3
Thecc.04G302700 Theobroma cacao HOM05D004725 ORTHO05D005683 2.6e-60 236.1 176 69.3
TWI09G0594 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 2.6e-60 236.1 226 58.0
Gorai.011G201500 Gossypium raimondii HOM05D004725 ORTHO05D005683 3.3e-60 235.7 224 57.1
Lj3A833G37 Lonicera japonica HOM05D004725 ORTHO05D005683 4.4e-60 235.3 214 57.0
Oeu001165.1 Olea europaea HOM05D004725 ORTHO05D005683 5.7e-60 235.0 238 55.0
HanXRQChr17g0554971 Helianthus annuus HOM05D004725 ORTHO05D005683 9.7e-60 234.2 211 58.3
HanXRQChr10g0291591 Helianthus annuus HOM05D004725 ORTHO05D005683 1.3e-59 233.8 211 57.8
CDE02G0725 Ceratophyllum demersum HOM05D004725 ORTHO05D005683 2.2e-59 233.0 221 59.7
BcaC06g30733 Brassica carinata HOM05D004725 ORTHO05D005683 4.8e-59 231.9 169 68.0
Peaxi162Scf00057g02232 Petunia axillaris HOM05D004725 ORTHO05D005683 1.1e-58 230.7 219 55.7
ECA236G4776 Erigeron canadensis HOM05D004725 ORTHO05D005683 3.1e-58 229.2 212 58.0
CSS0018454 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 9.1e-58 227.6 213 57.3
MELO3C006096.2 Cucumis melo HOM05D004725 ORTHO05D005683 1.2e-57 227.3 234 54.7
FAN12G0808 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.7e-57 226.1 220 57.3
MBI18_g03518_MAGBIO Magnolia biondii HOM05D004725 ORTHO05D005683 2.7e-57 226.1 211 59.2
Nitab4.5_0002789g0040 Nicotiana tabacum HOM05D004725 ORTHO05D005683 3.5e-57 225.7 220 58.2
unitig_37.g12782 Utricularia gibba HOM05D004725 ORTHO05D005683 5.9e-57 224.9 211 57.3
Actinidia31555 Actinidia chinensis HOM05D004725 ORTHO05D005683 7.7e-57 224.6 214 57.5
Ca_09654_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.0e-56 224.2 193 60.6
Prupe.1G115500 Prunus persica HOM05D004725 ORTHO05D005683 2.9e-56 222.6 185 60.5
PGR031G0191 Punica granatum HOM05D004725 ORTHO05D005683 6.5e-56 221.5 219 55.7
Os05g0143400 Oryza sativa ssp. japonica HOM05D004725 ORTHO05D005683 1.2e-54 217.2 203 54.2
Sc25g0003230 Simmondsia chinensis HOM05D004725 ORTHO05D005683 1.6e-54 216.9 216 56.0
SEGI_00745 Sequoiadendron giganteum HOM05D004725 ORTHO05D005683 3.6e-54 215.7 219 53.0
PSO782G1146 Papaver somniferum HOM05D004725 ORTHO05D005683 1.4e-53 213.8 213 55.9
Zm00001eb108600 Zea mays HOM05D004725 ORTHO05D005683 6.8e-53 211.5 204 52.5
arahy.Tifrunner.gnm1.ann1.NMZ4WG Arachis hypogaea HOM05D004725 ORTHO05D005683 1.2e-52 210.7 349 39.0
Haze_01314 Corylus avellana HOM05D004725 ORTHO05D005683 1.2e-52 210.7 161 66.5
PSO384G4206 Papaver somniferum HOM05D004725 ORTHO05D005683 1.3e-51 207.2 213 53.5
ATR0691G022 Amborella trichopoda HOM05D004725 ORTHO05D005683 1.7e-51 206.8 204 54.9
CAN.G598.3 Capsicum annuum HOM05D004725 ORTHO05D005683 4.8e-51 205.3 160 67.5
PSO063G5877 Papaver somniferum HOM05D004725 ORTHO05D005683 1.1e-50 204.1 213 54.5
SalBow6G0528 Salvia bowleyana HOM05D004725 ORTHO05D005683 2.7e-49 199.5 215 51.6
BcaC06g30731 Brassica carinata HOM05D004725 ORTHO05D005683 1.0e-48 197.6 143 69.2
MD13G1151200 Malus domestica HOM05D004725 ORTHO05D005683 1.7e-48 196.8 209 55.0
CARHR182700 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.2e-48 196.4 187 55.6
FAN12G0673 Fragaria x ananassa HOM05D004725 ORTHO05D005683 5.0e-48 195.3 250 50.0
GSVIVG01034912001 Vitis vinifera HOM05D004725 ORTHO05D005683 3.2e-47 192.6 205 53.7
Atru.chr4.3042 Acer truncatum HOM05D004725 ORTHO05D005683 5.5e-47 191.8 145 67.6
Ah.13g071340 Amaranthus hybridus HOM05D004725 ORTHO05D005683 7.2e-47 191.4 219 49.3
HPP92_027744 Vanilla planifolia HOM05D004725 ORTHO05D005683 8.0e-46 188.0 174 57.5
vmacro08028 Vaccinium macrocarpon HOM05D004725 ORTHO05D005683 8.8e-45 184.5 229 48.5
SMO351G0117 Selaginella moellendorffii HOM05D004725 ORTHO05D005683 4.4e-44 182.2 200 49.0
Dinv44275 Davidia involucrata HOM05D004725 ORTHO05D005683 1.7e-43 180.3 153 63.4
AagrBONN_evm.TU.Sc2ySwM_228.2917 Anthoceros agrestis HOM05D004725 ORTHO05D005683 7.0e-42 174.9 216 44.9
Rhsim05G0134600 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.2e-41 174.1 308 39.6
Mapoly0029s0136 Marchantia polymorpha HOM05D004725 ORTHO05D005683 1.1e-39 167.5 213 42.7
Pp3c12_20580 Physcomitrium patens HOM05D004725 ORTHO05D005683 3.3e-39 166.0 201 43.8
Cpa.g.sc9.42 Carica papaya HOM05D004725 ORTHO05D005683 5.6e-39 165.2 151 59.6
Rhsim04G0240300 Rhododendron simsii HOM05D004725 ORTHO05D005683 1.6e-38 163.7 259 43.2
CBR_g34308 Chara braunii HOM05D004725 ORTHO05D005683 1.8e-37 160.2 222 40.5
Ca_02282_v3 Cicer arietinum L. HOM05D004725 ORTHO05D005683 1.8e-37 160.2 121 68.6
Lalb_Chr20g0110441 Lupinus albus HOM05D004725 ORTHO05D005683 6.8e-37 158.3 121 66.9
AUR62039263 Chenopodium quinoa HOM05D004725 ORTHO05D005683 4.4e-36 155.6 220 42.3
EL10Ac3g05524 Beta vulgaris HOM05D004725 ORTHO05D005683 1.3e-35 154.1 172 51.7
MD16G1152100 Malus domestica HOM05D004725 ORTHO05D005683 1.7e-35 153.7 167 53.9
FAN07G0549 Fragaria x ananassa HOM05D004725 ORTHO05D005683 1.0e-32 144.4 139 56.8
FvH4_4g20000 Fragaria vesca HOM05D004725 ORTHO05D005683 1.9e-31 140.2 162 53.1
Hma1.2p1_0013F.1_g008380 Hydrangea macrophylla HOM05D004725 ORTHO05D005683 3.1e-29 132.9 131 48.9
CSS0006068 Camellia sinensis var. sinensis HOM05D004725 ORTHO05D005683 1.0e-24 117.9 173 45.1
FAN22G2356 Fragaria x ananassa HOM05D004725 ORTHO05D005683 2.3e-24 116.7 92 66.3
MCO14G052 Micromonas commoda HOM05D004725 ORTHO05D005683 3.0e-24 116.3 220 35.9
CAN.G327.11 Capsicum annuum HOM05D004725 ORTHO05D005683 1.5e-23 114.0 160 43.1
Atru.chr3.3242 Acer truncatum HOM05D004725 ORTHO05D005683 1.4e-21 107.5 217 35.9
RcHm_v2.0_Chr7g0210081 Rosa chinensis HOM05D004725 ORTHO05D005683 2.0e-20 103.6 99 54.5
HPP92_026068 Vanilla planifolia HOM05D004725 ORTHO05D005683 2.6e-20 103.2 109 48.6
HPP92_026067 Vanilla planifolia HOM05D004725 ORTHO05D005683 8.3e-19 98.2 104 55.8
CARHR287810 Cardamine hirsuta HOM05D004725 ORTHO05D005683 1.4e-18 97.4 176 40.3
Lalb_Chr20g0115601 Lupinus albus HOM05D004725 ORTHO05D005683 3.2e-18 96.3 99 52.5
RcHm_v2.0_Chr6g0255221 Rosa chinensis HOM05D004725 ORTHO05D005683 1.6e-17 94.0 84 60.7
Sabra10G0113400 Salix brachista HOM05D004725 ORTHO05D005683 2.7e-17 93.2 161 40.4
Cre09.g393600 Chlamydomonas reinhardtii HOM05D004725 ORTHO05D005683 2.3e-16 90.1 197 29.4
Actinidia18458 Actinidia chinensis HOM05D004725 ORTHO05D005683 2.6e-12 76.6 53 73.6
TWI73G0983 Tripterygium wilfordii HOM05D004725 ORTHO05D005683 4.4e-12 75.9 66 62.1
AUR62016226 Chenopodium quinoa HOM05D004725 ORTHO05D005683 2.4e-10 70.1 49 67.3
Zm00001eb143530 Zea mays HOM05D004725 ORTHO05D005683 2.1e-09 67.0 86 51.2
Lalb_Chr20g0110431 Lupinus albus HOM05D004725 ORTHO05D005683 2.7e-09 66.6 64 50.0
Zm00001eb401350 Zea mays HOM05D004725 ORTHO05D005683 4.6e-09 65.9 131 41.2
PRCOL_00004769 Prasinoderma coloniale HOM05D004725 ORTHO05D005683 7.8e-09 65.1 211 26.1
Nitab4.5_0007792g0050 Nicotiana tabacum HOM05D004725 ORTHO05D005683 6.6e-08 62.0 66 50.0
GSVIVG01034926001 Vitis vinifera HOM05D004725 ORTHO05D005683 1.5e-07 60.8 52 63.5
Zm00001eb417800 Zea mays HOM05D004725 ORTHO05D005683 1.6e-06 57.4 62 53.2
CARHR286240 Cardamine hirsuta HOM05D004725 ORTHO05D005683 2.8e-06 56.6 63 41.3


User provided reference genes

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