Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 6.0e-195 684.1 372 100.0
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 1.4e-156 556.6 433 73.4
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 1.1e-143 513.8 368 76.4
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.6e-139 500.0 369 73.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.6e-131 472.2 367 68.1
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.4e-130 470.3 369 69.6
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 2.0e-129 466.5 367 69.5
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 2.0e-129 466.5 362 69.6
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 3.3e-129 465.7 385 66.2
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 5.7e-129 464.9 369 68.6
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 9.7e-129 464.2 369 69.9
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 3.7e-128 462.2 387 66.4
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 6.3e-128 461.5 369 68.3
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 3.1e-127 459.1 370 67.8
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 7.0e-127 458.0 369 67.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 7.0e-127 458.0 366 66.4
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 7.0e-127 458.0 362 69.9
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 3.5e-126 455.7 369 66.9
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 1.0e-125 454.1 388 66.0
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 1.0e-125 454.1 370 67.6
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 1.7e-125 453.4 373 67.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 2.9e-125 452.6 364 66.8
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 3.8e-125 452.2 360 67.8
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 8.5e-125 451.1 370 67.0
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.1e-124 450.7 360 68.1
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.9e-124 449.9 362 67.4
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.9e-124 449.9 370 66.8
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 2.5e-124 449.5 367 64.6
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.2e-123 447.2 371 65.5
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-123 446.8 371 67.1
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.6e-123 446.8 371 67.1
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 6.1e-123 444.9 372 66.1
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 8.0e-123 444.5 371 66.0
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 8.0e-123 444.5 366 65.6
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 6.8e-122 441.4 387 63.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 1.5e-121 440.3 362 66.9
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 2.6e-121 439.5 369 64.8
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 2.6e-121 439.5 369 66.4
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 4.4e-121 438.7 369 65.9
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 7.5e-121 438.0 387 63.6
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 1.3e-120 437.2 366 66.1
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 1.7e-120 436.8 367 67.3
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 1.7e-120 436.8 367 65.7
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.2e-120 436.4 370 66.2
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.4e-119 433.7 366 63.9
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.1e-119 432.6 371 63.6
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 7.0e-119 431.4 365 65.2
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 9.1e-119 431.0 369 63.1
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 5.9e-118 428.3 369 65.9
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 7.7e-118 427.9 366 63.4
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 1.3e-117 427.2 369 63.1
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 1.7e-117 426.8 370 63.5
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 2.9e-117 426.0 365 63.0
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.5e-116 422.9 362 63.3
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 3.2e-116 422.5 368 62.8
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 3.2e-116 422.5 366 63.1
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 1.2e-115 420.6 367 65.4
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 1.6e-115 420.2 374 63.6
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 2.1e-115 419.9 366 60.9
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.0e-114 417.5 369 64.0
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.3e-114 416.4 370 63.8
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 5.2e-114 415.2 367 62.7
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 2.6e-113 412.9 369 62.3
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 3.4e-113 412.5 369 62.9
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 4.4e-113 412.1 369 62.3
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 3.7e-112 409.1 383 60.1
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 4.9e-112 408.7 388 61.1
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 6.3e-112 408.3 383 60.8
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 6.3e-112 408.3 369 61.8
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 1.8e-111 406.8 342 65.8
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 3.1e-111 406.0 370 61.9
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 2.7e-110 402.9 371 62.0
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 3.5e-110 402.5 399 57.4
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 2.1e-107 393.3 364 59.6
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 3.6e-107 392.5 371 62.3
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 4.4e-105 385.6 381 58.3
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 4.9e-104 382.1 391 57.3
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 4.9e-104 382.1 367 59.1
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 8.3e-104 381.3 370 59.2
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 4.1e-103 379.0 369 58.5
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.0e-101 374.4 343 62.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 8.6e-101 371.3 368 56.8
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 3.3e-100 369.4 368 56.5
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 3.3e-100 369.4 383 55.6
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 9.5e-100 367.9 381 55.6
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 2.8e-99 366.3 345 60.3
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 2.8e-99 366.3 368 57.6
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 6.2e-99 365.2 362 58.8
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.0e-98 364.4 363 56.7
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 4.0e-98 362.5 369 55.8
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 4.4e-97 359.0 363 59.5
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 1.3e-96 357.5 363 59.2
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 2.2e-96 356.7 371 56.1
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 8.3e-96 354.8 371 56.6
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 1.4e-95 354.0 439 48.3
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 5.4e-95 352.1 384 53.6
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 5.4e-95 352.1 384 53.6
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 7.0e-95 351.7 396 53.8
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 1.2e-94 350.9 383 55.9
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 1.2e-94 350.9 365 56.7
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 2.5e-92 343.2 383 54.0
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 3.3e-92 342.8 369 53.1
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.2e-89 334.3 369 53.1
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.2e-89 334.3 372 53.2
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 7.1e-87 325.1 359 53.5
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 1.6e-86 323.9 384 51.6
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 6.0e-86 322.0 384 51.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 5.6e-84 315.5 391 51.7
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 8.1e-83 311.6 391 51.2
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 8.1e-83 311.6 391 51.2
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 5.2e-82 308.9 391 50.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 3.4e-81 306.2 378 50.8
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 7.6e-81 305.1 368 49.2
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 9.6e-76 288.1 312 54.8
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 3.8e-72 276.2 216 67.1
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 6.4e-72 275.4 397 44.3
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 3.9e-69 266.2 212 64.6
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 3.6e-67 259.6 367 44.1
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 1.4e-66 257.7 303 51.5
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 8.7e-61 238.4 440 38.4
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.1e-59 233.8 189 65.6
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 1.7e-56 224.2 264 52.7
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 1.8e-53 214.2 352 38.6
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 7.9e-46 188.7 214 52.3
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 6.7e-45 185.7 375 37.1
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 1.0e-37 161.8 117 70.9
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 1.3e-35 154.8 163 56.4
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 4.1e-34 149.8 122 65.6
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-18 98.2 66 74.2
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 7.0e-18 95.9 410 25.9
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.0e-16 92.0 425 24.9
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 2.9e-16 90.5 56 78.6
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.9e-15 87.8 93 48.4
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 7.2e-15 85.9 118 47.5
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 9.4e-15 85.5 56 73.2
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 8.0e-14 82.4 511 24.3
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 4.1e-10 70.1 48 64.6
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 7.0e-10 69.3 60 65.0
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 1.3e-08 65.1 61 62.3
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 3.8e-08 63.5 61 60.7
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 1.9e-07 61.2 59 61.0


User provided reference genes

Program Settings