Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.5e-157 558.5 341 100.0
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 5.4e-49 199.1 319 41.1
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.5e-46 191.0 351 39.0
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.4e-44 184.5 154 66.2
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 1.8e-44 184.1 176 58.0
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 3.0e-44 183.3 165 60.0
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.0e-44 183.0 159 62.9
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 4.0e-44 183.0 159 62.9
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 4.0e-44 183.0 160 61.9
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 4.0e-44 183.0 162 61.7
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 6.8e-44 182.2 161 60.2
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-43 181.4 159 62.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 1.2e-43 181.4 159 62.3
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.0e-43 180.6 159 62.3
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 4.4e-43 179.5 185 55.7
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 1.3e-42 177.9 156 61.5
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.3e-42 177.9 161 59.6
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 1.7e-42 177.6 163 59.5
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 3.7e-42 176.4 153 60.8
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 3.7e-42 176.4 160 60.6
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 4.9e-42 176.0 159 61.6
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 4.9e-42 176.0 165 57.0
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 6.3e-42 175.6 159 61.6
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 8.3e-42 175.3 160 58.8
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 8.3e-42 175.3 154 60.4
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 1.1e-41 174.9 156 59.6
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 3.1e-41 173.3 344 49.4
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 4.1e-41 172.9 173 56.6
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 4.1e-41 172.9 156 59.0
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 7.0e-41 172.2 158 60.8
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-40 171.4 162 57.4
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.2e-40 171.4 162 57.4
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 1.2e-40 171.4 159 59.7
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 1.6e-40 171.0 153 58.8
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.6e-40 171.0 147 62.6
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 4.5e-40 169.5 161 59.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 4.5e-40 169.5 161 59.6
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 5.9e-40 169.1 154 60.4
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 1.0e-39 168.3 159 57.2
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 1.0e-39 168.3 161 59.0
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 1.0e-39 168.3 162 58.6
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.3e-39 167.9 159 59.1
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.3e-39 167.2 157 60.5
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 2.9e-39 166.8 160 57.5
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 2.9e-39 166.8 158 58.2
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 3.8e-39 166.4 158 58.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 3.8e-39 166.4 161 59.0
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 3.8e-39 166.4 161 59.0
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 3.8e-39 166.4 161 59.0
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 6.6e-39 165.6 160 58.8
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.6e-39 165.2 160 59.4
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 8.6e-39 165.2 161 58.4
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 1.5e-38 164.5 154 58.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 1.5e-38 164.5 159 58.5
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 2.5e-38 163.7 124 69.4
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 4.3e-38 162.9 158 56.3
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 4.3e-38 162.9 157 58.0
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 5.6e-38 162.5 167 55.7
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 5.6e-38 162.5 163 55.8
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 9.5e-38 161.8 158 55.7
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 1.2e-37 161.4 158 55.7
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 1.2e-37 161.4 162 55.6
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 1.6e-37 161.0 161 55.3
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.8e-37 160.2 162 55.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 3.6e-37 159.8 160 55.6
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.6e-37 159.8 168 56.0
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 4.7e-37 159.5 167 55.1
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 2.3e-36 157.1 161 54.7
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 1.2e-35 154.8 169 52.7
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 2.0e-35 154.1 167 51.5
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 52.7
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 51.5
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 52.7
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 52.7
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 50.9
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 3.4e-35 153.3 167 50.9
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 7.5e-35 152.1 167 52.1
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 9.8e-35 151.8 163 52.1
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 9.8e-35 151.8 133 59.4
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 1.3e-34 151.4 163 54.6
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.3e-34 151.4 133 59.4
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.2e-34 150.6 163 54.6
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 2.9e-34 150.2 130 59.2
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 3.7e-34 149.8 163 50.9
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 6.4e-34 149.1 163 50.9
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 6.4e-34 149.1 163 54.0
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.4e-33 147.1 161 49.7
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 9.2e-33 145.2 161 51.6
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-32 144.8 160 51.9
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.2e-32 144.8 160 51.9
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 1.6e-32 144.4 122 63.9
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.7e-32 143.7 161 52.2
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 2.3e-31 140.6 159 50.3
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 4.3e-30 136.3 295 34.9
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.6e-29 134.4 120 60.8
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 2.1e-29 134.0 174 46.6
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 3.6e-29 133.3 154 49.4
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 1.4e-28 131.3 157 51.0
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.8e-28 131.0 147 53.1
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 4.0e-28 129.8 171 43.9
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 5.2e-28 129.4 152 48.7
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 2.0e-27 127.5 138 54.3
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.3e-26 124.8 268 36.9
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 6.4e-26 122.5 124 54.8
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.2e-24 118.2 150 45.3
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 1.3e-23 114.8 136 46.3
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.3e-23 114.0 94 63.8
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 3.9e-23 113.2 110 56.4
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 6.6e-23 112.5 104 54.8
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 1.6e-21 107.8 104 54.8
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.6e-21 107.8 95 57.9
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 1.8e-20 104.4 150 44.0
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 4.0e-20 103.2 93 57.0
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 6.8e-20 102.4 104 57.7
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 2.2e-18 97.4 257 31.5
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 3.2e-17 93.6 80 55.0
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 5.1e-15 86.3 78 57.7
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 4.4e-11 73.2 92 50.0
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 1.7e-10 71.2 69 52.2
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 6.4e-10 69.3 113 39.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 1.9e-09 67.8 64 57.8
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 1.2e-08 65.1 117 39.3
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 5.6e-06 56.2 51 62.7


User provided reference genes

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