Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G110800 Populus trichocarpa HOM05D005030 ORTHO05D006490 0.0e+00 2624.0 1354 100.0
Sabra07G0090700 Salix brachista HOM05D005030 ORTHO05D006490 0.0e+00 2382.1 1447 87.1
Atru.chr4.774 Acer truncatum HOM05D005030 ORTHO05D006490 0.0e+00 1761.9 1360 67.9
Thecc.01G124600 Theobroma cacao HOM05D005030 ORTHO05D006490 0.0e+00 1743.0 1356 67.6
Cfa002838 Carpinus fangiana HOM05D005030 ORTHO05D006490 0.0e+00 1714.9 1359 67.8
Duzib147G1675 Durio zibethinus HOM05D005030 ORTHO05D006490 0.0e+00 1711.4 1354 66.8
TWI31G0652 Tripterygium wilfordii HOM05D005030 ORTHO05D006490 0.0e+00 1691.0 1352 66.0
Ciclev10024723m.g Citrus clementina HOM05D005030 ORTHO05D006490 0.0e+00 1673.7 1355 66.1
Dinv24313 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1667.9 1384 65.9
Gohir.D11G232200 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1667.5 1356 66.4
Gorai.002G151400 Gossypium raimondii HOM05D005030 ORTHO05D006490 0.0e+00 1660.2 1356 66.2
Gohir.A11G230400 Gossypium hirsutum HOM05D005030 ORTHO05D006490 0.0e+00 1640.9 1356 65.6
Actinidia06653 Actinidia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1633.2 1361 64.7
GSVIVG01026545001 Vitis vinifera HOM05D005030 ORTHO05D006490 0.0e+00 1629.4 1369 64.6
QL06p030436 Quercus lobata HOM05D005030 ORTHO05D006490 0.0e+00 1617.8 1486 59.6
Nn5g28681 Nelumbo nucifera HOM05D005030 ORTHO05D006490 0.0e+00 1573.9 1363 63.5
Prupe.3G147500 Prunus persica HOM05D005030 ORTHO05D006490 0.0e+00 1568.5 1359 62.5
Dinv05712 Davidia involucrata HOM05D005030 ORTHO05D006490 0.0e+00 1542.7 1361 64.9
Eucgr.H04934 Eucalyptus grandis HOM05D005030 ORTHO05D006490 0.0e+00 1497.6 1360 60.8
RcHm_v2.0_Chr2g0120111 Rosa chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1472.2 1358 59.4
CSS0019451 Camellia sinensis var. sinensis HOM05D005030 ORTHO05D006490 0.0e+00 1471.4 1474 58.0
PGR102G2159 Punica granatum HOM05D005030 ORTHO05D006490 0.0e+00 1468.4 1358 58.9
VMungo0251G0340 Vigna mungo HOM05D005030 ORTHO05D006490 0.0e+00 1452.6 1345 57.8
Lj2A602G37 Lonicera japonica HOM05D005030 ORTHO05D006490 0.0e+00 1451.8 1400 58.1
CsaV3_6G041830 Cucumis sativus L. HOM05D005030 ORTHO05D006490 0.0e+00 1448.0 1363 60.2
Phvul.002G270100 Phaseolus vulgaris HOM05D005030 ORTHO05D006490 0.0e+00 1438.3 1349 58.6
ClCG01G015590 Citrullus lanatus HOM05D005030 ORTHO05D006490 0.0e+00 1434.9 1361 60.0
Ca_17653_v3 Cicer arietinum L. HOM05D005030 ORTHO05D006490 0.0e+00 1420.2 1348 57.6
Glyma.08G147000 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1420.2 1350 58.7
Sed0011527 Sechium edule HOM05D005030 ORTHO05D006490 0.0e+00 1418.3 1366 59.2
Glyma.05G189400 Glycine max HOM05D005030 ORTHO05D006490 0.0e+00 1414.1 1352 58.7
COL.COLO4_13999 Corchorus olitorius HOM05D005030 ORTHO05D006490 0.0e+00 1410.6 1379 58.5
Medtr8g093100 Medicago truncatula HOM05D005030 ORTHO05D006490 0.0e+00 1402.5 1349 57.0
CiPaw.03G127500 Carya illinoinensis HOM05D005030 ORTHO05D006490 0.0e+00 1401.0 1389 58.8
Sc03g0005100 Simmondsia chinensis HOM05D005030 ORTHO05D006490 0.0e+00 1398.3 1366 57.5
FvH4_1g23980 Fragaria vesca HOM05D005030 ORTHO05D006490 0.0e+00 1396.7 1372 57.0
Lsat_1_v5_gn_1_117161 Lactuca sativa HOM05D005030 ORTHO05D006490 0.0e+00 1392.1 1376 57.3
MELO3C008038.2 Cucumis melo HOM05D005030 ORTHO05D006490 0.0e+00 1390.2 1418 57.1
Psat7g048200 Pisum sativum HOM05D005030 ORTHO05D006490 0.0e+00 1387.9 1356 55.7
Aqoxy5G02153 Aquilegia oxysepala HOM05D005030 ORTHO05D006490 0.0e+00 1386.7 1365 57.0
FAN19G2772 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1385.2 1408 55.8
Sopen11g001650 Solanum pennellii HOM05D005030 ORTHO05D006490 0.0e+00 1384.4 1367 56.3
FAN26G2615 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1382.5 1370 56.9
MBI18_g25945_MAGBIO Magnolia biondii HOM05D005030 ORTHO05D006490 0.0e+00 1379.0 1364 55.9
Lalb_Chr13g0296501 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1370.5 1352 58.1
Cc08_g02710 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1370.1 1382 56.0
FAN23G1259 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1370.1 1409 55.1
FAN28G1848 Fragaria x ananassa HOM05D005030 ORTHO05D006490 0.0e+00 1369.4 1400 55.4
Oeu037792.2 Olea europaea HOM05D005030 ORTHO05D006490 0.0e+00 1357.0 1403 56.7
arahy.Tifrunner.gnm1.ann1.CRY23I Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1356.3 1352 57.5
PSO210G3052 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1353.2 1369 56.0
CANSAT01G2434 Cannabis sativa HOM05D005030 ORTHO05D006490 0.0e+00 1349.7 1358 56.8
Lalb_Chr12g0203281 Lupinus albus HOM05D005030 ORTHO05D006490 0.0e+00 1346.6 1351 56.6
arahy.Tifrunner.gnm1.ann1.HR53B8 Arachis hypogaea HOM05D005030 ORTHO05D006490 0.0e+00 1345.5 1351 57.4
Nitab4.5_0002909g0070 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1335.5 1357 55.4
TPR.G37387 Trifolium pratense HOM05D005030 ORTHO05D006490 0.0e+00 1332.8 1406 52.6
THA.LOC104821859 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1323.9 1366 54.0
PSO832G2315 Papaver somniferum HOM05D005030 ORTHO05D006490 0.0e+00 1317.0 1383 55.1
DCAR_001349 Daucus carota HOM05D005030 ORTHO05D006490 0.0e+00 1313.1 1431 53.2
Manes.12G152000 Manihot esculenta HOM05D005030 ORTHO05D006490 0.0e+00 1309.3 1076 66.3
THA.LOC104820424 Tarenaya hassleriana HOM05D005030 ORTHO05D006490 0.0e+00 1309.3 1358 54.1
Migut.H01102 Erythranthe guttata HOM05D005030 ORTHO05D006490 0.0e+00 1303.9 1359 53.7
Lj4g0022240 Lotus japonicus HOM05D005030 ORTHO05D006490 0.0e+00 1292.7 1354 55.1
Sp3g16780 Schrenkiella parvula HOM05D005030 ORTHO05D006490 0.0e+00 1288.5 1362 52.9
BraA05t21931Z Brassica rapa HOM05D005030 ORTHO05D006490 0.0e+00 1286.2 1363 52.8
A05p30890 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1282.7 1364 52.7
BcaB06g25924 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1270.4 1358 52.2
Thhalv10019906m.g Eutrema salsugineum HOM05D005030 ORTHO05D006490 0.0e+00 1270.0 1363 52.7
Peaxi162Scf00012g02419 Petunia axillaris HOM05D005030 ORTHO05D006490 0.0e+00 1270.0 1396 52.6
Aa31LG8G5540 Aethionema arabicum HOM05D005030 ORTHO05D006490 0.0e+00 1266.5 1358 52.7
CARHR094120 Cardamine hirsuta HOM05D005030 ORTHO05D006490 0.0e+00 1265.8 1354 52.6
BcaC05g28579 Brassica carinata HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1363 52.2
C05p46820 Brassica napus HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1363 52.2
BolC5t33412H Brassica oleracea HOM05D005030 ORTHO05D006490 0.0e+00 1264.2 1363 52.2
HanXRQChr02g0043651 Helianthus annuus HOM05D005030 ORTHO05D006490 0.0e+00 1263.8 1396 53.5
Hund04465 Selenicereus undatus HOM05D005030 ORTHO05D006490 0.0e+00 1262.3 1364 53.2
AT3G18730 Arabidopsis thaliana HOM05D005030 ORTHO05D006490 0.0e+00 1260.0 1362 52.0
Nitab4.5_0003048g0010 Nicotiana tabacum HOM05D005030 ORTHO05D006490 0.0e+00 1258.4 1385 52.1
AL3G32080 Arabidopsis lyrata HOM05D005030 ORTHO05D006490 0.0e+00 1253.4 1353 51.9
AUR62017924 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1241.9 1352 51.8
Carub.0003s1851 Capsella rubella HOM05D005030 ORTHO05D006490 0.0e+00 1229.2 1365 52.7
AUR62003613 Chenopodium quinoa HOM05D005030 ORTHO05D006490 0.0e+00 1226.1 1366 51.0
SGA_v2.0_scaffold137G35137 Striga asiatica HOM05D005030 ORTHO05D006490 0.0e+00 1222.6 1433 50.1
Ah.03g146670 Amaranthus hybridus HOM05D005030 ORTHO05D006490 0.0e+00 1214.5 1357 51.6
Rhsim10G0138800 Rhododendron simsii HOM05D005030 ORTHO05D006490 0.0e+00 1198.0 1356 53.5
Os02g0782800 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 0.0e+00 1184.5 1366 50.4
ECA240G4559 Erigeron canadensis HOM05D005030 ORTHO05D006490 0.0e+00 1181.4 1327 52.4
Cc07_g17780 Coffea canephora HOM05D005030 ORTHO05D006490 0.0e+00 1176.8 1266 55.5
ATR0772G104 Amborella trichopoda HOM05D005030 ORTHO05D006490 0.0e+00 1174.8 1377 51.5
Haze_25135 Corylus avellana HOM05D005030 ORTHO05D006490 0.0e+00 1092.8 910 65.6
CDE06G1651 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 0.0e+00 1083.9 1367 46.9
unitig_0.g2514 Utricularia gibba HOM05D005030 ORTHO05D006490 4.0e-305 1052.0 1358 46.4
MD00G1172700 Malus domestica HOM05D005030 ORTHO05D006490 1.9e-299 1033.1 1391 45.1
Zm00001eb192940 Zea mays HOM05D005030 ORTHO05D006490 2.3e-292 1009.6 1128 51.7
Hma1.2p1_0006F.1_g004750 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 4.6e-277 958.7 917 59.0
HPP92_005719 Vanilla planifolia HOM05D005030 ORTHO05D006490 1.6e-274 950.3 1314 45.1
CiPaw.03G127200 Carya illinoinensis HOM05D005030 ORTHO05D006490 8.4e-255 884.8 825 60.2
Cpa.g.sc42.108 Carica papaya HOM05D005030 ORTHO05D006490 8.2e-242 841.6 683 64.9
TAR381G0402 Trochodendron aralioides HOM05D005030 ORTHO05D006490 2.6e-240 836.6 708 65.1
Solyc11g005690.3 Solanum lycopersicum HOM05D005030 ORTHO05D006490 4.3e-235 819.3 844 55.9
MD09G1255500 Malus domestica HOM05D005030 ORTHO05D006490 2.2e-234 817.0 922 54.1
Cpa.g.sc42.107 Carica papaya HOM05D005030 ORTHO05D006490 7.4e-227 792.0 639 69.2
SHI11439 Sapria himalayana HOM05D005030 ORTHO05D006490 7.4e-227 792.0 781 58.5
MSTRG.2678 Avicennia marina HOM05D005030 ORTHO05D006490 5.9e-216 755.7 728 58.7
CiPaw.03G127600 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.0e-207 728.4 841 52.1
CiPaw.03G127100 Carya illinoinensis HOM05D005030 ORTHO05D006490 1.1e-190 671.8 480 73.1
MSTRG.2677 Avicennia marina HOM05D005030 ORTHO05D006490 1.2e-171 608.6 597 55.1
Mapoly0047s0105 Marchantia polymorpha HOM05D005030 ORTHO05D006490 3.2e-161 573.9 1275 34.2
MD17G1248700 Malus domestica HOM05D005030 ORTHO05D000105 2.1e-149 534.6 1362 32.7
CAN.G802.6 Capsicum annuum HOM05D005030 ORTHO05D006490 2.5e-142 511.1 506 54.5
SEGI_29284 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.4e-140 505.4 670 44.3
Haze_25140 Corylus avellana HOM05D005030 ORTHO05D006490 6.9e-140 503.1 358 71.2
SMO203G0163 Selaginella moellendorffii HOM05D005030 ORTHO05D006490 1.7e-130 471.9 1229 29.8
Pp3c6_6440 Physcomitrium patens HOM05D005030 ORTHO05D006490 3.3e-126 457.6 1326 29.0
EL10Ac6g15267 Beta vulgaris HOM05D005030 ORTHO05D006490 7.4e-126 456.4 1041 33.3
AagrBONN_evm.TU.Sc2ySwM_228.5700 Anthoceros agrestis HOM05D005030 ORTHO05D006490 8.5e-122 443.0 1162 31.4
CDE08G0761 Ceratophyllum demersum HOM05D005030 ORTHO05D006490 2.5e-121 441.4 358 60.9
SEGI_07118 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 2.4e-108 398.3 417 49.4
SEGI_08752 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 6.5e-98 363.6 673 35.7
ECA234G2315 Erigeron canadensis HOM05D005030 ORTHO05D006490 3.6e-88 331.3 439 41.9
Os02g0784100 Oryza sativa ssp. japonica HOM05D005030 ORTHO05D006490 1.6e-80 305.8 236 64.4
Thecc.01G125300 Theobroma cacao HOM05D005030 ORTHO05D006490 7.0e-76 290.4 377 49.6
SEGI_25247 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 1.6e-75 289.3 326 47.2
vmacro12845 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.3e-73 281.2 319 51.7
FAN23G1614 Fragaria x ananassa HOM05D005030 ORTHO05D006490 3.0e-71 275.0 351 46.7
TAR381G0325 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.5e-70 270.4 234 63.7
vmacro12844 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 4.3e-65 254.6 340 46.2
PGSC0003DMG400025561 Solanum tuberosum HOM05D005030 ORTHO05D006490 1.1e-52 213.4 269 43.9
vmacro12843 Vaccinium macrocarpon HOM05D005030 ORTHO05D006490 2.2e-45 189.1 200 58.0
ECA234G1901 Erigeron canadensis HOM05D005030 ORTHO05D006490 1.2e-40 173.3 290 38.6
MD17G1248600 Malus domestica HOM05D005030 ORTHO05D006490 1.2e-35 156.8 285 39.3
TAR625G0665 Trochodendron aralioides HOM05D005030 ORTHO05D006490 6.6e-34 151.0 120 65.8
CBR_g36663 Chara braunii HOM05D005030 ORTHO05D006490 4.8e-32 144.8 504 29.4
Hma1.2p1_0006F.1_g004730 Hydrangea macrophylla HOM05D005030 ORTHO05D006490 1.4e-31 143.3 174 51.1
BcaNung06136 Brassica carinata HOM05D005030 ORTHO05D006490 1.6e-27 129.8 214 38.8
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 5.6e-25 121.3 90 64.4
CBR_g61481 Chara braunii HOM05D005030 ORTHO05D001575 1.4e-23 116.7 374 26.2
SEGI_13008 Sequoiadendron giganteum HOM05D005030 ORTHO05D050943 1.1e-20 107.1 443 28.2
TAR376G0117 Trochodendron aralioides HOM05D005030 ORTHO05D006490 4.2e-20 105.1 166 40.4
SEGI_13201 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 4.6e-19 101.7 415 27.7
Sc05g0004550 Simmondsia chinensis HOM05D005030 ORTHO05D006490 1.0e-18 100.5 105 54.3
SEGI_37730 Sequoiadendron giganteum HOM05D005030 ORTHO05D006490 9.6e-17 94.0 283 25.8
Actinidia09824 Actinidia chinensis HOM05D005030 ORTHO05D001675 6.9e-15 87.8 81 54.3
CBR_g36665 Chara braunii HOM05D005030 ORTHO05D006490 1.3e-13 83.6 468 21.2
MBI11_g38367_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D010488 1.9e-12 79.7 68 58.8
TAR376G0051 Trochodendron aralioides HOM05D005030 ORTHO05D006490 7.9e-11 74.3 128 42.2


User provided reference genes

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