Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G106200 Populus trichocarpa HOM05D006465 ORTHO05D008207 3.5e-48 194.5 90 100.0
Potri.005G063100 Populus trichocarpa HOM05D006465 ORTHO05D008207 4.0e-28 127.9 88 69.3
Sabra05G0052300 Salix brachista HOM05D006465 ORTHO05D008207 1.5e-27 125.9 88 67.0
Thecc.01G132600 Theobroma cacao HOM05D006465 ORTHO05D008207 8.3e-26 120.2 88 64.8
Gohir.A05G384500 Gossypium hirsutum HOM05D005188 ORTHO05D006153 1.9e-25 119.0 88 64.8
Gohir.D04G031000 Gossypium hirsutum HOM05D006465 ORTHO05D008207 3.2e-25 118.2 88 63.6
Gorai.012G035200 Gossypium raimondii HOM05D005188 ORTHO05D006153 3.2e-25 118.2 88 63.6
Manes.03G123050 Manihot esculenta HOM05D006465 ORTHO05D008207 3.2e-25 118.2 88 65.9
Duzib187G1992 Durio zibethinus HOM05D006465 ORTHO05D008207 1.2e-24 116.3 88 62.5
A03p04100 Brassica napus HOM05D006465 ORTHO05D008207 1.6e-24 115.9 88 64.8
BolC3t12987H Brassica oleracea HOM05D006465 ORTHO05D008207 1.6e-24 115.9 88 64.8
BraA03t09753Z Brassica rapa HOM05D006465 ORTHO05D008207 1.6e-24 115.9 88 64.8
Sed0005537 Sechium edule HOM05D006465 ORTHO05D008207 2.1e-24 115.5 88 64.8
TPR.G28231 Trifolium pratense HOM05D006465 ORTHO05D008207 2.1e-24 115.5 88 63.6
A10p27930 Brassica napus HOM05D006465 ORTHO05D008207 2.7e-24 115.2 88 64.8
C03p04560 Brassica napus HOM05D006465 ORTHO05D008207 2.7e-24 115.2 88 63.6
THA.LOC104800074 Tarenaya hassleriana HOM05D006465 ORTHO05D008207 4.6e-24 114.4 88 62.5
BcaB08g37219 Brassica carinata HOM05D006465 ORTHO05D008207 6.0e-24 114.0 88 63.6
BraA10t44842Z Brassica rapa HOM05D006465 ORTHO05D008207 6.0e-24 114.0 88 63.6
Medtr3g096320 Medicago truncatula HOM05D006465 ORTHO05D008207 6.0e-24 114.0 88 62.5
arahy.Tifrunner.gnm1.ann1.X6LXMM Arachis hypogaea HOM05D006465 ORTHO05D008207 7.8e-24 113.6 99 57.6
Glyma.06G153700 Glycine max HOM05D006465 ORTHO05D008207 7.8e-24 113.6 88 62.5
Psat5g062320 Pisum sativum HOM05D006465 ORTHO05D008207 7.8e-24 113.6 88 62.5
AL6G19700 Arabidopsis lyrata HOM05D006465 ORTHO05D008207 1.3e-23 112.8 88 63.6
AT5G09310 Arabidopsis thaliana HOM05D006465 ORTHO05D008207 1.3e-23 112.8 88 63.6
Ca_16948_v3 Cicer arietinum L. HOM05D002517 ORTHO05D003040 1.3e-23 112.8 89 65.2
Ca_16968_v3 Cicer arietinum L. HOM05D006465 ORTHO05D008207 1.3e-23 112.8 89 65.2
CARHR204090 Cardamine hirsuta HOM05D006465 ORTHO05D008207 1.7e-23 112.5 88 61.4
CsaV3_2G018330 Cucumis sativus L. HOM05D006465 ORTHO05D008207 1.7e-23 112.5 88 64.8
Hund23271 Selenicereus undatus HOM05D006465 ORTHO05D008207 1.7e-23 112.5 89 66.3
Actinidia06618 Actinidia chinensis HOM05D006465 ORTHO05D008207 2.3e-23 112.1 88 61.4
Sc07g0001830 Simmondsia chinensis HOM05D006465 ORTHO05D008207 2.3e-23 112.1 88 61.4
VMungo1309G0274 Vigna mungo HOM05D006465 ORTHO05D008207 2.3e-23 112.1 88 61.4
arahy.Tifrunner.gnm1.ann1.Q2CXKS Arachis hypogaea HOM05D006465 ORTHO05D008207 3.0e-23 111.7 115 52.2
Carub.0006s0786 Capsella rubella HOM05D006465 ORTHO05D008207 3.0e-23 111.7 88 62.5
MD07G1057500 Malus domestica HOM05D006465 ORTHO05D008207 3.9e-23 111.3 88 60.2
RcHm_v2.0_Chr6g0264391 Rosa chinensis HOM05D006465 ORTHO05D008207 3.9e-23 111.3 88 61.4
Aa31LG3G17710 Aethionema arabicum HOM05D003132 ORTHO05D003736 5.1e-23 110.9 88 60.2
Ah.02g121490 Amaranthus hybridus HOM05D006465 ORTHO05D008207 5.1e-23 110.9 88 64.8
Thhalv10014951m.g Eutrema salsugineum HOM05D006465 ORTHO05D008207 5.1e-23 110.9 88 61.4
Glyma.04G212600 Glycine max HOM05D006465 ORTHO05D008207 5.1e-23 110.9 88 62.5
Ciclev10002814m.g Citrus clementina HOM05D006465 ORTHO05D008207 8.6e-23 110.2 88 60.2
Haze_25235 Corylus avellana HOM05D006465 ORTHO05D008207 8.6e-23 110.2 88 62.5
ClCG02G000500 Citrullus lanatus HOM05D006465 ORTHO05D008207 1.1e-22 109.8 88 63.6
GSVIVG01026483001 Vitis vinifera HOM05D006465 ORTHO05D008207 1.1e-22 109.8 88 58.0
Atru.chr4.901 Acer truncatum HOM05D006465 ORTHO05D008207 1.5e-22 109.4 88 60.2
FvH4_2g08820 Fragaria vesca HOM05D006465 ORTHO05D008207 1.5e-22 109.4 88 60.2
FAN10G0435 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.5e-22 109.4 88 60.2
FAN15G0521 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.5e-22 109.4 88 60.2
FAN24G0187 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.5e-22 109.4 88 60.2
Lalb_Chr08g0238351 Lupinus albus HOM05D006465 ORTHO05D008207 1.9e-22 109.0 88 60.2
Phvul.009G150900 Phaseolus vulgaris HOM05D006465 ORTHO05D008207 1.9e-22 109.0 88 60.2
AUR62003565 Chenopodium quinoa HOM05D006465 ORTHO05D008207 3.3e-22 108.2 88 62.5
CANSAT01G2296 Cannabis sativa HOM05D006465 ORTHO05D008207 4.3e-22 107.8 88 60.2
Dinv07122 Davidia involucrata HOM05D006465 ORTHO05D008207 4.3e-22 107.8 88 58.0
Sp6g34010 Schrenkiella parvula HOM05D006465 ORTHO05D008207 4.3e-22 107.8 88 60.2
AUR62017880 Chenopodium quinoa HOM05D006465 ORTHO05D008207 5.6e-22 107.5 88 62.5
Lsat_1_v5_gn_9_25981 Lactuca sativa HOM05D006465 ORTHO05D008207 5.6e-22 107.5 88 58.0
PGR119G2011 Punica granatum HOM05D006465 ORTHO05D008207 7.3e-22 107.1 89 59.6
TWI79G1280 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 7.3e-22 107.1 88 56.8
Dinv24364 Davidia involucrata HOM05D006465 ORTHO05D008207 1.2e-21 106.3 88 58.0
vmacro12798 Vaccinium macrocarpon HOM05D006465 ORTHO05D008207 1.2e-21 106.3 88 59.1
TWI75G0808 Tripterygium wilfordii HOM05D006465 ORTHO05D008207 1.6e-21 105.9 88 58.0
TAR625G1289 Trochodendron aralioides HOM05D006465 ORTHO05D008207 2.8e-21 105.1 89 61.8
HanXRQChr15g0491331 Helianthus annuus HOM05D006465 ORTHO05D008207 3.6e-21 104.8 88 55.7
Prupe.4G271100 Prunus persica HOM05D006465 ORTHO05D008207 3.6e-21 104.8 89 59.6
CiPaw.04G082200 Carya illinoinensis HOM05D006465 ORTHO05D008207 6.2e-21 104.0 88 56.8
PSO017G4081 Papaver somniferum HOM05D006465 ORTHO05D008207 8.1e-21 103.6 88 61.4
Aqoxy5G02229 Aquilegia oxysepala HOM05D006465 ORTHO05D000054 1.1e-20 103.2 89 60.7
ECA247G0944 Erigeron canadensis HOM05D006465 ORTHO05D008207 1.1e-20 103.2 88 56.8
EL10Ac6g15303 Beta vulgaris HOM05D006465 ORTHO05D008207 1.4e-20 102.8 88 60.2
Lj1g0025116 Lotus japonicus HOM05D006465 ORTHO05D008207 1.4e-20 102.8 88 56.8
TAR381G0246 Trochodendron aralioides HOM05D006465 ORTHO05D008207 1.8e-20 102.4 89 59.6
MELO3C023238.2 Cucumis melo HOM05D006465 ORTHO05D008207 2.4e-20 102.1 116 51.7
Hund04414 Selenicereus undatus HOM05D006465 ORTHO05D008207 2.4e-20 102.1 71 66.2
PSO170G5905 Papaver somniferum HOM05D006465 ORTHO05D008207 3.1e-20 101.7 88 59.1
Nn5g28548 Nelumbo nucifera HOM05D006465 ORTHO05D008207 4.0e-20 101.3 89 59.6
QL10p043584 Quercus lobata HOM05D006465 ORTHO05D008207 6.8e-20 100.5 84 56.0
CSS0043698 Camellia sinensis var. sinensis HOM05D006465 ORTHO05D008207 8.9e-20 100.1 88 54.5
CDE04G1235 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 8.9e-20 100.1 88 54.5
Hma1.2p1_0476F.1_g160840 Hydrangea macrophylla HOM05D006465 ORTHO05D008207 8.9e-20 100.1 88 55.7
Lj4A839G53 Lonicera japonica HOM05D006465 ORTHO05D008207 2.0e-19 99.0 88 52.3
SalBow7G2903 Salvia bowleyana HOM05D006465 ORTHO05D008207 2.0e-19 99.0 105 51.4
MD02G1262600 Malus domestica HOM05D006465 ORTHO05D008207 2.6e-19 98.6 54 77.8
HPP92_019397 Vanilla planifolia HOM05D006465 ORTHO05D008207 2.6e-19 98.6 91 56.0
Nitab4.5_0000181g0060 Nicotiana tabacum HOM05D006465 ORTHO05D008207 2.2e-18 95.5 91 56.0
DCAR_014336 Daucus carota HOM05D006465 ORTHO05D008207 2.9e-18 95.1 88 51.1
Migut.L00965 Erythranthe guttata HOM05D006465 ORTHO05D008207 2.9e-18 95.1 91 51.6
Peaxi162Scf00270g01115 Petunia axillaris HOM05D006465 ORTHO05D008207 2.9e-18 95.1 90 53.3
Migut.L00880 Erythranthe guttata HOM05D006465 ORTHO05D008207 1.1e-17 93.2 91 50.5
Sopen06g005870 Solanum pennellii HOM05D006465 ORTHO05D008207 2.4e-17 92.0 91 53.8
PGSC0003DMG400030138 Solanum tuberosum HOM05D006465 ORTHO05D008207 2.4e-17 92.0 91 53.8
CAN.G934.1 Capsicum annuum HOM05D006465 ORTHO05D008207 3.2e-17 91.7 91 53.8
Cc07_g18520 Coffea canephora HOM05D006465 ORTHO05D008207 4.2e-17 91.3 91 53.8
MSTRG.3605 Avicennia marina HOM05D006465 ORTHO05D008207 9.2e-17 90.1 90 51.1
unitig_88.g27767 Utricularia gibba HOM05D006465 ORTHO05D008207 2.1e-16 89.0 91 48.4
ATR0138G005 Amborella trichopoda HOM05D006465 ORTHO05D008207 2.7e-16 88.6 88 47.7
Os01g0960000 Oryza sativa ssp. japonica HOM05D006465 ORTHO05D008207 4.6e-16 87.8 96 49.0
FvH4_3g04510 Fragaria vesca HOM05D006465 ORTHO05D008207 6.0e-16 87.4 80 57.5
FAN11G3155 Fragaria x ananassa HOM05D006465 ORTHO05D008207 1.0e-15 86.7 79 54.4
Oeu004242.1 Olea europaea HOM05D006465 ORTHO05D008207 1.0e-15 86.7 92 53.3
SGA_v2.0_scaffold19G08773 Striga asiatica HOM05D006465 ORTHO05D008207 1.0e-15 86.7 91 49.5
Oeu050125.1 Olea europaea HOM05D006465 ORTHO05D008207 2.3e-15 85.5 92 51.1
Mapoly0113s0017 Marchantia polymorpha HOM05D006465 ORTHO05D008207 8.7e-15 83.6 89 47.2
Solyc06g016760.3 Solanum lycopersicum HOM05D006465 ORTHO05D008207 1.1e-14 83.2 61 59.0
CDE12G0205 Ceratophyllum demersum HOM05D006465 ORTHO05D008207 2.5e-14 82.0 55 61.8
AagrBONN_evm.TU.Sc2ySwM_117.2181 Anthoceros agrestis HOM05D006465 ORTHO05D008207 3.3e-14 81.6 88 46.6
Zm00001eb362550 Zea mays HOM05D006465 ORTHO05D008207 9.6e-14 80.1 93 45.2
Pp3c15_3010 Physcomitrium patens HOM05D006465 ORTHO05D008207 1.4e-12 76.3 88 45.5
Lalb_Chr11g0068471 Lupinus albus HOM05D006465 ORTHO05D008207 9.9e-11 70.1 43 69.8
SMO367G0154 Selaginella moellendorffii HOM05D006465 ORTHO05D008207 6.4e-10 67.4 88 42.0
CBR_g29852 Chara braunii HOM05D006465 ORTHO05D008207 1.7e-07 59.3 86 39.5
SEGI_17702 Sequoiadendron giganteum HOM05D006465 ORTHO05D008207 1.9e-06 55.8 77 42.9


User provided reference genes

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