Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 3.5e-209 731.5 395 100.0
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 1.9e-162 576.2 433 77.1
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 5.8e-148 528.1 392 76.3
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 7.6e-148 527.7 383 76.5
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 5.5e-90 335.5 381 53.5
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 9.5e-90 334.7 375 53.9
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 6.1e-89 332.0 384 53.9
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 1.7e-86 323.9 349 53.6
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.9e-83 313.2 325 55.1
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 3.8e-83 312.8 391 49.6
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 3.3e-82 309.7 396 50.3
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 9.5e-82 308.1 382 50.0
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 1.6e-81 307.4 387 50.6
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 1.4e-80 304.3 396 49.7
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.4e-80 304.3 324 55.6
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 2.2e-78 297.0 322 54.0
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 6.4e-78 295.4 323 54.2
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 6.4e-78 295.4 323 54.2
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 8.3e-78 295.0 316 53.8
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.6e-76 290.8 378 50.5
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 6.0e-76 288.9 332 53.0
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 1.9e-74 283.9 327 54.1
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.3e-74 283.1 391 47.8
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 5.6e-74 282.3 324 53.4
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 4.7e-73 279.3 389 48.3
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 6.8e-72 275.4 377 46.9
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.7e-70 270.8 362 48.6
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 2.2e-70 270.4 321 50.8
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 1.1e-69 268.1 325 50.2
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.1e-69 268.1 385 46.0
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 9.2e-69 265.0 385 47.3
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 3.5e-68 263.1 334 49.1
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 6.0e-68 262.3 312 48.7
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 1.0e-67 261.5 319 50.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 1.3e-67 261.2 334 49.1
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.3e-67 260.4 322 49.4
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.0e-67 260.0 331 49.2
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 5.1e-67 259.2 330 48.2
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 3.3e-66 256.5 395 42.3
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 5.6e-66 255.8 439 41.2
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 7.3e-66 255.4 394 42.4
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 7.3e-66 255.4 324 48.8
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 1.2e-65 254.6 329 46.2
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 2.8e-65 253.4 344 47.4
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 4.7e-65 252.7 326 49.1
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 8.1e-65 251.9 346 45.4
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 8.1e-65 251.9 297 49.2
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 1.1e-64 251.5 404 42.6
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 1.1e-64 251.5 337 49.3
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.8e-64 250.8 262 54.2
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 4.0e-64 249.6 340 45.9
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 5.2e-64 249.2 342 48.2
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 8.9e-64 248.4 436 41.3
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.5e-63 247.7 296 50.7
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 4.4e-63 246.1 326 46.9
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 7.5e-63 245.4 286 51.0
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 9.9e-63 245.0 307 47.2
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.7e-62 244.2 239 58.6
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 3.7e-62 243.0 406 40.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 2.4e-61 240.4 299 51.5
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 4.1e-61 239.6 308 46.4
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 2.1e-60 237.3 323 46.7
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.7e-60 236.9 287 51.6
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 1.0e-59 235.0 392 41.1
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 1.7e-59 234.2 384 43.2
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.3e-59 233.8 395 40.5
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.3e-59 233.8 438 40.4
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 3.0e-59 233.4 415 39.5
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 3.9e-59 233.0 399 41.1
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.1e-59 232.6 400 41.2
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 9.5e-58 228.4 311 46.6
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 1.6e-57 227.6 400 40.5
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 2.8e-57 226.9 341 43.1
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 1.4e-56 224.6 347 42.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 6.8e-56 222.2 332 42.8
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-55 220.7 391 43.2
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 4.4e-55 219.5 315 44.1
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-54 218.0 389 40.6
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.3e-54 218.0 320 44.1
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 2.9e-54 216.9 314 44.9
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 9.2e-53 211.8 319 44.5
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 9.2e-53 211.8 243 51.0
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 4.6e-52 209.5 355 40.8
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 6.0e-52 209.1 242 52.1
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.7e-51 207.6 359 39.3
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 1.1e-50 204.9 338 40.2
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 1.1e-50 204.9 307 44.0
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 1.9e-50 204.1 321 41.4
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 2.5e-50 203.8 356 38.5
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 9.6e-50 201.8 284 44.7
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 1.2e-49 201.4 319 40.4
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.1e-49 200.7 260 49.2
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.1e-49 200.7 257 47.5
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 3.6e-49 199.9 390 41.3
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 3.6e-49 199.9 321 41.1
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 6.2e-49 199.1 318 42.1
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 2.4e-48 197.2 317 41.0
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 2.4e-48 197.2 302 41.4
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 9.0e-48 195.3 396 40.7
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 9.0e-48 195.3 396 40.7
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 9.0e-48 195.3 264 45.5
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 9.0e-48 195.3 287 44.9
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.2e-47 194.9 392 40.3
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 1.5e-47 194.5 294 41.8
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 3.4e-47 193.4 315 39.0
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 4.9e-46 189.5 391 36.6
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.3e-43 180.6 280 41.1
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 3.9e-43 179.9 319 39.8
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.9e-42 177.6 382 35.9
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.3e-42 176.4 390 34.9
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.3e-42 175.6 327 39.8
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 5.3e-40 169.5 394 33.2
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.0e-39 167.5 167 52.7
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 3.8e-38 163.3 239 45.2
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 4.2e-37 159.8 320 39.1
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 7.1e-37 159.1 319 37.0
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 6.9e-32 142.5 326 37.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-23 114.8 134 49.3
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 5.5e-21 106.3 140 51.4
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 4.1e-16 90.1 199 31.2
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 2.2e-14 84.3 64 62.5
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 1.1e-08 65.5 103 44.7
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 1.1e-08 65.5 103 44.7
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 1.1e-08 65.5 103 44.7
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.4e-08 65.1 103 44.7
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.4e-08 65.1 103 44.7
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 1.8e-08 64.7 128 38.3
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.1e-08 63.5 144 42.4
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 5.3e-08 63.2 151 31.1
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.5e-07 61.6 140 42.9
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.4e-07 60.5 222 28.8
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 8.5e-06 55.8 71 42.3


User provided reference genes

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