Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G080100 Populus trichocarpa HOM05D004317 ORTHO05D005031 2.7e-197 691.8 345 100.0
Potri.005G085100 Populus trichocarpa HOM05D004317 ORTHO05D005031 9.9e-160 567.0 307 91.9
Sabra05G0069900 Salix brachista HOM05D004317 ORTHO05D005031 2.9e-159 565.5 317 89.9
Sabra07G0067200 Salix brachista HOM05D004317 ORTHO05D005031 2.5e-155 552.4 378 77.2
COL.COLO4_10999 Corchorus olitorius HOM05D004317 ORTHO05D005031 4.9e-151 538.1 307 85.3
Duzib147G1288 Durio zibethinus HOM05D004317 ORTHO05D005031 1.6e-149 533.1 307 84.4
Thecc.01G114600 Theobroma cacao HOM05D004317 ORTHO05D005031 1.6e-149 533.1 307 84.7
Haze_25055 Corylus avellana HOM05D004317 ORTHO05D005031 4.6e-149 531.6 310 84.8
Cfa002764 Carpinus fangiana HOM05D004317 ORTHO05D005031 7.9e-149 530.8 308 85.4
CiPaw.04G091000 Carya illinoinensis HOM05D004317 ORTHO05D005031 6.7e-148 527.7 307 84.7
Atru.chr4.2810 Acer truncatum HOM05D004317 ORTHO05D005031 8.7e-148 527.3 308 84.7
Cpa.g.sc191.9 Carica papaya HOM05D004317 ORTHO05D005031 1.1e-147 526.9 307 83.7
QL06p031876 Quercus lobata HOM05D004317 ORTHO05D005031 2.5e-147 525.8 306 85.0
MD15G1445400 Malus domestica HOM05D004317 ORTHO05D005031 9.6e-147 523.9 307 84.0
Dinv19475 Davidia involucrata HOM05D004317 ORTHO05D005031 6.2e-146 521.2 307 84.0
TWI79G1778 Tripterygium wilfordii HOM05D004317 ORTHO05D005031 1.8e-145 519.6 308 83.4
Duzib264G0693 Durio zibethinus HOM05D004317 ORTHO05D005031 2.4e-145 519.2 309 82.2
CANSAT01G1092 Cannabis sativa HOM05D004317 ORTHO05D005031 4.0e-145 518.5 307 82.1
GSVIVG01022244001 Vitis vinifera HOM05D004317 ORTHO05D005031 1.2e-144 516.9 307 82.7
TAR625G1069 Trochodendron aralioides HOM05D004317 ORTHO05D005031 4.5e-144 515.0 307 83.7
Duzib187G1335 Durio zibethinus HOM05D004317 ORTHO05D005031 7.6e-144 514.2 308 81.8
Gohir.D11G057400 Gossypium hirsutum HOM05D004317 ORTHO05D005031 7.6e-144 514.2 307 82.1
Glyma.05G184400 Glycine max HOM05D004317 ORTHO05D005031 1.7e-143 513.1 308 83.8
Gorai.007G062600 Gossypium raimondii HOM05D004317 ORTHO05D005031 1.7e-143 513.1 307 81.8
MD08G1250200 Malus domestica HOM05D004317 ORTHO05D005031 1.7e-143 513.1 307 82.1
Gohir.D11G232000 Gossypium hirsutum HOM05D004317 ORTHO05D005031 2.2e-143 512.7 307 81.4
Gorai.007G245100 Gossypium raimondii HOM05D004317 ORTHO05D005031 2.9e-143 512.3 307 81.8
Ciclev10026038m.g Citrus clementina HOM05D004317 ORTHO05D005031 3.8e-143 511.9 307 82.4
Rhsim10G0148900 Rhododendron simsii HOM05D004317 ORTHO05D005031 4.9e-143 511.5 307 84.0
Dinv42682 Davidia involucrata HOM05D004317 ORTHO05D005031 6.4e-143 511.1 307 82.7
FAN26G1550 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.1e-142 510.4 309 81.2
VMungo0251G1621 Vigna mungo HOM05D004317 ORTHO05D005031 1.1e-142 510.4 307 82.1
FvH4_1g22810 Fragaria vesca HOM05D004317 ORTHO05D005031 1.9e-142 509.6 309 80.9
FAN19G1483 Fragaria x ananassa HOM05D004317 ORTHO05D005031 2.4e-142 509.2 309 80.9
Gohir.A11G053900 Gossypium hirsutum HOM05D004317 ORTHO05D005031 5.5e-142 508.1 307 81.4
RcHm_v2.0_Chr2g0117121 Rosa chinensis HOM05D004317 ORTHO05D005031 9.3e-142 507.3 308 81.2
FAN28G2916 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.6e-141 506.5 309 80.6
Ca_17692_v3 Cicer arietinum L. HOM05D004317 ORTHO05D005031 2.1e-141 506.1 307 82.7
Glyma.08G142300 Glycine max HOM05D004317 ORTHO05D005031 6.0e-141 504.6 308 82.5
Psat7g050920 Pisum sativum HOM05D004317 ORTHO05D005031 6.0e-141 504.6 307 82.4
FAN23G2660 Fragaria x ananassa HOM05D004317 ORTHO05D005031 1.8e-140 503.1 309 80.6
Sp2g27880 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.8e-140 503.1 311 82.3
AT5G64813 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 2.3e-140 502.7 312 82.1
Phvul.002G265300 Phaseolus vulgaris HOM05D004317 ORTHO05D005031 2.3e-140 502.7 307 81.1
CARHR278810 Cardamine hirsuta HOM05D004317 ORTHO05D005031 3.0e-140 502.3 311 81.7
TPR.G2235 Trifolium pratense HOM05D004317 ORTHO05D005031 5.1e-140 501.5 307 82.1
Carub.0008s2563 Capsella rubella HOM05D004317 ORTHO05D005031 6.7e-140 501.1 312 82.4
AL8G42280 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 8.7e-140 500.7 312 81.7
PGR102G1870 Punica granatum HOM05D004317 ORTHO05D005031 8.7e-140 500.7 308 80.5
Lalb_Chr12g0203501 Lupinus albus HOM05D004317 ORTHO05D005031 1.1e-139 500.4 307 81.1
THA.LOC104819313 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 2.5e-139 499.2 311 82.0
Hma1.2p1_0375F.1_g138790 Hydrangea macrophylla HOM05D004317 ORTHO05D005031 3.3e-139 498.8 308 81.2
CsaV3_2G017700 Cucumis sativus L. HOM05D004317 ORTHO05D005031 5.6e-139 498.0 307 80.5
ClCG02G000980 Citrullus lanatus HOM05D004317 ORTHO05D005031 1.3e-138 496.9 307 79.8
MELO3C020962.2 Cucumis melo HOM05D004317 ORTHO05D005031 1.6e-138 496.5 307 80.1
Medtr8g091980 Medicago truncatula HOM05D004317 ORTHO05D005031 2.8e-138 495.7 315 80.3
Thhalv10004519m.g Eutrema salsugineum HOM05D004317 ORTHO05D005031 1.4e-137 493.4 312 81.1
THA.LOC104799321 Tarenaya hassleriana HOM05D004317 ORTHO05D005031 1.4e-137 493.4 310 79.7
vmacro12895 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 2.4e-137 492.7 359 72.4
BraA06t26097Z Brassica rapa HOM05D004317 ORTHO05D005031 3.1e-137 492.3 321 78.5
Aa31LG1G17120 Aethionema arabicum HOM05D004317 ORTHO05D005031 5.3e-137 491.5 308 80.8
Eucgr.H04871 Eucalyptus grandis HOM05D004317 ORTHO05D005031 6.9e-137 491.1 307 77.9
Nn5g28875 Nelumbo nucifera HOM05D004317 ORTHO05D005031 6.9e-137 491.1 313 78.0
MSTRG.2526 Avicennia marina HOM05D004317 ORTHO05D005031 2.0e-136 489.6 307 78.8
Migut.H02443 Erythranthe guttata HOM05D004317 ORTHO05D005031 4.5e-136 488.4 329 73.9
Lj4g0017689 Lotus japonicus HOM05D004317 ORTHO05D005031 4.5e-136 488.4 310 80.6
BcaB02g09831 Brassica carinata HOM05D004317 ORTHO05D005031 5.8e-136 488.0 312 80.4
BcaC01g02714 Brassica carinata HOM05D004317 ORTHO05D005031 7.6e-136 487.6 311 80.1
C03p61360 Brassica napus HOM05D004317 ORTHO05D005031 7.6e-136 487.6 311 80.1
Nn1g05158 Nelumbo nucifera HOM05D004317 ORTHO05D005031 7.6e-136 487.6 309 79.3
Cc11_g00180 Coffea canephora HOM05D004317 ORTHO05D005031 1.3e-135 486.9 307 79.2
A06p31600 Brassica napus HOM05D004317 ORTHO05D005031 2.2e-135 486.1 311 79.7
BolC3t18396H Brassica oleracea HOM05D004317 ORTHO05D005031 2.2e-135 486.1 318 78.6
arahy.Tifrunner.gnm1.ann1.N9CCL6 Arachis hypogaea HOM05D004317 ORTHO05D005031 3.8e-135 485.3 325 75.1
Sed0006410 Sechium edule HOM05D004317 ORTHO05D005031 3.8e-135 485.3 307 78.2
ATR1120G075 Amborella trichopoda HOM05D004317 ORTHO05D005031 4.9e-135 485.0 307 76.2
Lalb_Chr13g0296231 Lupinus albus HOM05D004317 ORTHO05D005031 8.4e-135 484.2 307 78.8
PSO170G2871 Papaver somniferum HOM05D004317 ORTHO05D005031 7.1e-134 481.1 308 77.6
Oeu028366.1 Olea europaea HOM05D004317 ORTHO05D005031 1.2e-133 480.3 307 77.9
arahy.Tifrunner.gnm1.ann1.IW8T8H Arachis hypogaea HOM05D004317 ORTHO05D005031 1.6e-133 479.9 323 74.6
Lsat_1_v5_gn_6_7740 Lactuca sativa HOM05D004317 ORTHO05D005031 3.5e-133 478.8 306 76.5
BcaB04g19996 Brassica carinata HOM05D004317 ORTHO05D005031 6.0e-133 478.0 312 79.2
CiPaw.03G133600 Carya illinoinensis HOM05D004317 ORTHO05D005031 6.0e-133 478.0 286 82.9
Peaxi162Scf00106g01615 Petunia axillaris HOM05D004317 ORTHO05D005031 6.0e-133 478.0 309 78.0
vmacro18639 Vaccinium macrocarpon HOM05D004317 ORTHO05D005031 2.3e-132 476.1 307 79.8
CAN.G241.17 Capsicum annuum HOM05D004317 ORTHO05D005031 3.0e-132 475.7 309 79.0
Lj4A864T19 Lonicera japonica HOM05D004317 ORTHO05D005031 3.9e-132 475.3 315 78.7
Nitab4.5_0000184g0250 Nicotiana tabacum HOM05D004317 ORTHO05D005031 8.7e-132 474.2 309 78.6
Gohir.A11G197500 Gossypium hirsutum HOM05D004317 ORTHO05D005031 1.1e-131 473.8 307 77.2
Lj2C567G4 Lonicera japonica HOM05D004317 ORTHO05D005031 3.3e-131 472.2 313 76.4
HanXRQChr02g0047931 Helianthus annuus HOM05D004317 ORTHO05D005031 4.3e-131 471.9 309 76.4
Peaxi162Scf00270g00910 Petunia axillaris HOM05D004317 ORTHO05D005031 4.3e-131 471.9 309 77.3
Nitab4.5_0004977g0020 Nicotiana tabacum HOM05D004317 ORTHO05D005031 5.7e-131 471.5 309 78.0
arahy.Tifrunner.gnm1.ann1.8U6WSJ Arachis hypogaea HOM05D004317 ORTHO05D005031 7.4e-131 471.1 308 78.6
A09p08860 Brassica napus HOM05D004317 ORTHO05D005031 3.7e-130 468.8 314 79.0
Solyc04g051700.3 Solanum lycopersicum HOM05D004317 ORTHO05D005031 8.2e-130 467.6 309 77.7
PSO210G1492 Papaver somniferum HOM05D004317 ORTHO05D005031 1.1e-129 467.2 308 76.0
PGSC0003DMG402031196 Solanum tuberosum HOM05D004317 ORTHO05D005031 1.1e-129 467.2 309 77.3
Aqoxy6G00452 Aquilegia oxysepala HOM05D004317 ORTHO05D005031 1.4e-129 466.8 307 75.2
Lalb_Chr11g0068101 Lupinus albus HOM05D004317 ORTHO05D005031 1.8e-129 466.5 302 76.2
BraA09t36537Z Brassica rapa HOM05D004317 ORTHO05D005031 2.4e-129 466.1 314 79.0
arahy.Tifrunner.gnm1.ann1.QW6G0A Arachis hypogaea HOM05D004317 ORTHO05D005031 3.1e-129 465.7 310 78.7
C09p10280 Brassica napus HOM05D004317 ORTHO05D005031 3.1e-129 465.7 314 78.3
BolC9t53928H Brassica oleracea HOM05D004317 ORTHO05D005031 3.1e-129 465.7 314 78.3
Oeu015853.1 Olea europaea HOM05D004317 ORTHO05D005031 3.1e-129 465.7 307 76.2
BcaC04g23277 Brassica carinata HOM05D004317 ORTHO05D005031 4.1e-129 465.3 314 78.7
GSVIVG01013682001 Vitis vinifera HOM05D004317 ORTHO05D005031 9.0e-129 464.2 307 75.2
EL10Ac6g14771 Beta vulgaris HOM05D004317 ORTHO05D005031 2.0e-128 463.0 307 74.3
Sopen04g023080 Solanum pennellii HOM05D004317 ORTHO05D005031 2.0e-128 463.0 309 77.7
Rhsim08G0005500 Rhododendron simsii HOM05D004317 ORTHO05D005031 5.9e-128 461.5 307 77.2
AUR62027164 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.3e-127 460.3 306 73.5
Sc07g0001570 Simmondsia chinensis HOM05D004317 ORTHO05D005031 1.7e-127 459.9 307 74.9
TAR381G0083 Trochodendron aralioides HOM05D004317 ORTHO05D005031 5.0e-127 458.4 312 77.9
MBI01_g44371_MAGBIO Magnolia biondii HOM05D004317 ORTHO05D005031 8.5e-127 457.6 328 72.0
HanXRQChr03g0078021 Helianthus annuus HOM05D004317 ORTHO05D005031 4.2e-126 455.3 309 76.1
Hund03530 Selenicereus undatus HOM05D004317 ORTHO05D005031 5.5e-126 454.9 307 73.3
AL6G20330 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 7.2e-126 454.5 310 76.5
Sp6g33500 Schrenkiella parvula HOM05D004317 ORTHO05D005031 1.6e-125 453.4 312 76.3
Ah.02g125940 Amaranthus hybridus HOM05D004317 ORTHO05D005031 2.7e-125 452.6 307 72.0
DCAR_000764 Daucus carota HOM05D004317 ORTHO05D005031 3.6e-125 452.2 309 75.1
Sc03g0004440 Simmondsia chinensis HOM05D004317 ORTHO05D005031 3.9e-124 448.7 308 74.0
Sed0024973 Sechium edule HOM05D004317 ORTHO05D005031 1.1e-121 440.7 305 73.8
ECA240G0243 Erigeron canadensis HOM05D004317 ORTHO05D005031 2.4e-121 439.5 307 71.7
AT5G09910 Arabidopsis thaliana HOM05D004317 ORTHO05D005031 1.5e-120 436.8 310 74.5
CDE05G1892 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 2.2e-119 433.0 307 70.0
Carub.0006s0835 Capsella rubella HOM05D004317 ORTHO05D005031 8.5e-119 431.0 299 74.9
Rhsim07G0116100 Rhododendron simsii HOM05D004317 ORTHO05D005031 1.9e-118 429.9 305 72.1
Manes.12G143400 Manihot esculenta HOM05D004317 ORTHO05D005031 1.6e-117 426.8 242 86.8
MSTRG.23310 Avicennia marina HOM05D004317 ORTHO05D005031 1.8e-116 423.3 307 69.7
Os10g0135200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 2.0e-115 419.9 311 68.5
HPP92_009117 Vanilla planifolia HOM05D004317 ORTHO05D005031 6.3e-114 414.8 288 71.5
SalBow6G4125 Salvia bowleyana HOM05D004317 ORTHO05D005031 1.2e-112 410.6 307 68.7
Ah.05g168370 Amaranthus hybridus HOM05D004317 ORTHO05D005031 2.6e-112 409.5 308 67.5
PSO541G5773 Papaver somniferum HOM05D004317 ORTHO05D005031 2.6e-112 409.5 303 70.0
Zm00001eb224280 Zea mays HOM05D004317 ORTHO05D005031 4.5e-112 408.7 308 65.6
AUR62034924 Chenopodium quinoa HOM05D004317 ORTHO05D005031 1.9e-110 403.3 316 65.5
unitig_0.g479 Utricularia gibba HOM05D004317 ORTHO05D005031 7.9e-109 397.9 317 67.2
Zm00001eb398890 Zea mays HOM05D004317 ORTHO05D005031 3.0e-108 396.0 304 64.5
EL10Ac1g01634 Beta vulgaris HOM05D004317 ORTHO05D005031 5.2e-108 395.2 360 58.3
AUR62003298 Chenopodium quinoa HOM05D004317 ORTHO05D005031 5.3e-105 385.2 272 70.6
Os03g0242200 Oryza sativa ssp. japonica HOM05D004317 ORTHO05D005031 2.0e-104 383.3 307 62.2
SGA_v2.0_scaffold2G01290 Striga asiatica HOM05D004317 ORTHO05D005031 3.8e-103 379.0 319 63.6
Prupe.1G587300 Prunus persica HOM05D004317 ORTHO05D005031 1.5e-102 377.1 230 80.4
PSO675G4086 Papaver somniferum HOM05D004317 ORTHO05D005031 2.7e-101 372.9 247 73.7
DCAR_001376 Daucus carota HOM05D004317 ORTHO05D005031 2.4e-97 359.8 316 65.8
HPP92_021785 Vanilla planifolia HOM05D004317 ORTHO05D005031 2.7e-88 329.7 215 75.3
AUR62026610 Chenopodium quinoa HOM05D004317 ORTHO05D005031 8.0e-77 291.6 236 63.6
Mapoly0088s0081 Marchantia polymorpha HOM05D004317 ORTHO05D005031 1.8e-73 280.4 322 50.3
CDE11G1235 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 7.0e-73 278.5 170 77.1
CARHR203430 Cardamine hirsuta HOM05D004317 ORTHO05D005031 1.7e-71 273.9 154 83.8
SMO364G0333 Selaginella moellendorffii HOM05D004317 ORTHO05D005031 2.9e-66 256.5 207 63.3
ECA233G0885 Erigeron canadensis HOM05D004317 ORTHO05D005031 3.2e-57 226.5 158 71.5
Oeu031971.2 Olea europaea HOM05D004317 ORTHO05D005031 8.9e-52 208.4 118 85.6
Nn3g19889 Nelumbo nucifera HOM05D004317 ORTHO05D005031 1.3e-37 161.4 101 77.2
AUR62039713 Chenopodium quinoa HOM05D004317 ORTHO05D005031 4.2e-33 146.4 113 62.8
SalBow5G1590 Salvia bowleyana HOM05D004317 ORTHO05D005031 9.6e-30 135.2 79 75.9
CBR_g23133 Chara braunii HOM05D000019 ORTHO05D000002 3.4e-27 126.7 130 46.9
SEGI_23806 Sequoiadendron giganteum HOM05D004317 ORTHO05D005031 3.9e-23 113.2 86 64.0
CDE11G1206 Ceratophyllum demersum HOM05D004317 ORTHO05D005031 6.7e-23 112.5 109 56.9
CARHR203420 Cardamine hirsuta HOM05D004317 ORTHO05D005031 8.2e-21 105.5 118 59.3
Actinidia33578 Actinidia chinensis HOM05D004317 ORTHO05D005031 5.3e-20 102.8 90 66.7
TAR628G1042 Trochodendron aralioides HOM05D004317 ORTHO05D005031 5.3e-20 102.8 67 71.6
MCO10G219 Micromonas commoda HOM05D004317 ORTHO05D005031 6.5e-18 95.9 196 31.6
Actinidia35263 Actinidia chinensis HOM05D004317 ORTHO05D005031 2.5e-14 84.0 105 47.6
Glyma.17G174700 Glycine max HOM05D004317 ORTHO05D005031 9.7e-14 82.0 78 56.4
AL2G19240 Arabidopsis lyrata HOM05D004317 ORTHO05D005031 2.7e-08 63.9 57 64.9
ClCG02G000960 Citrullus lanatus HOM05D000726 ORTHO05D000799 2.3e-07 60.8 200 23.5
COL.COLO4_36527 Corchorus olitorius HOM05D002016 ORTHO05D015438 6.7e-07 59.3 30 90.0
CsaV3_2G017730 Cucumis sativus L. HOM05D000726 ORTHO05D000799 6.7e-07 59.3 199 23.1
Manes.08G013100 Manihot esculenta HOM05D000255 ORTHO05D001116 6.7e-07 59.3 145 26.2
Eucgr.K02437 Eucalyptus grandis HOM05D000255 ORTHO05D001116 1.1e-06 58.5 108 29.6
TWI74G1653 Tripterygium wilfordii HOM05D000255 ORTHO05D001116 4.3e-06 56.6 103 30.1
RcHm_v2.0_Chr7g0178561 Rosa chinensis HOM05D000064 ORTHO05D008044 7.4e-06 55.8 150 24.0
arahy.Tifrunner.gnm1.ann1.ZHN2U2 Arachis hypogaea HOM05D000918 ORTHO05D000791 9.7e-06 55.5 166 25.3
COL.COLO4_07411 Corchorus olitorius HOM05D002016 ORTHO05D015438 9.7e-06 55.5 30 83.3


User provided reference genes

Program Settings