Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G052200 Populus trichocarpa HOM05D004966 ORTHO05D006199 0.0e+00 1664.8 1111 100.0
Sabra07G0045800 Salix brachista HOM05D004966 ORTHO05D006199 0.0e+00 1532.3 1103 94.9
Manes.12G112800 Manihot esculenta HOM05D004966 ORTHO05D006199 0.0e+00 1144.0 1107 78.1
Duzib147G1627 Durio zibethinus HOM05D004966 ORTHO05D006199 0.0e+00 1137.1 1114 78.1
Atru.chr3.210 Acer truncatum HOM05D004966 ORTHO05D006199 0.0e+00 1135.6 1108 78.7
Thecc.01G067600 Theobroma cacao HOM05D004966 ORTHO05D006199 0.0e+00 1133.6 1110 77.9
Gorai.007G220700 Gossypium raimondii HOM05D004966 ORTHO05D006199 0.0e+00 1107.0 1112 77.2
Ciclev10024760m.g Citrus clementina HOM05D004966 ORTHO05D006199 0.0e+00 1104.7 1108 77.3
TWI09G0336 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 0.0e+00 1104.4 1108 76.9
Gohir.D11G205500 Gossypium hirsutum HOM05D004966 ORTHO05D006199 0.0e+00 1100.5 1112 77.0
Gohir.A11G217900 Gossypium hirsutum HOM05D004966 ORTHO05D006199 0.0e+00 1095.9 1112 76.7
COL.COLO4_11522 Corchorus olitorius HOM05D004966 ORTHO05D006199 0.0e+00 1083.2 1131 75.1
Prupe.6G225100 Prunus persica HOM05D004966 ORTHO05D006199 0.0e+00 1077.8 1117 74.2
Duzib187G0681 Durio zibethinus HOM05D004966 ORTHO05D006199 5.4e-308 1061.2 1111 75.9
Actinidia32817 Actinidia chinensis HOM05D004966 ORTHO05D006199 5.0e-306 1054.7 1116 73.5
Cfa004090 Carpinus fangiana HOM05D004966 ORTHO05D006199 5.0e-306 1054.7 1105 75.1
MD02G1181200 Malus domestica HOM05D004966 ORTHO05D006199 3.3e-297 1025.4 1106 72.9
Haze_15324 Corylus avellana HOM05D004966 ORTHO05D006199 2.8e-296 1022.3 1104 74.1
TWI73G0630 Tripterygium wilfordii HOM05D004966 ORTHO05D006199 4.7e-296 1021.5 1107 72.3
Ca_24712_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.1e-295 1020.4 1110 72.0
Ca_24727_v3 Cicer arietinum L. HOM05D004966 ORTHO05D006199 1.1e-295 1020.4 1110 72.0
CSS0024631 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.1e-295 1018.8 1109 74.5
Lj2g0010110 Lotus japonicus HOM05D004966 ORTHO05D006199 2.6e-294 1015.8 1109 70.6
Glyma.17G164600 Glycine max HOM05D004966 ORTHO05D006199 1.3e-293 1013.4 1107 70.9
TPR.G20946 Trifolium pratense HOM05D004966 ORTHO05D006199 1.9e-292 1009.6 1107 73.0
RcHm_v2.0_Chr2g0107271 Rosa chinensis HOM05D004966 ORTHO05D006199 9.2e-292 1007.3 1104 72.6
Nitab4.5_0000868g0040 Nicotiana tabacum HOM05D004966 ORTHO05D006199 4.6e-291 1005.0 1108 71.3
Glyma.01G191100 Glycine max HOM05D004966 ORTHO05D006199 1.0e-290 1003.8 1114 70.6
Medtr5g016190 Medicago truncatula HOM05D004966 ORTHO05D006199 2.5e-289 999.2 1110 72.4
Hma1.2p1_0017F.1_g012040 Hydrangea macrophylla HOM05D004966 ORTHO05D006199 5.6e-289 998.0 1106 73.6
Cc07_g06700 Coffea canephora HOM05D004966 ORTHO05D006199 7.3e-289 997.7 1108 71.4
CANSAT01G2710 Cannabis sativa HOM05D004966 ORTHO05D006199 9.5e-289 997.3 1108 71.9
Eucgr.I00728 Eucalyptus grandis HOM05D004966 ORTHO05D006199 9.5e-289 997.3 1105 71.5
Solyc02g092780.3 Solanum lycopersicum HOM05D004966 ORTHO05D006199 3.6e-288 995.3 1108 71.1
CsaV3_6G043790 Cucumis sativus L. HOM05D004966 ORTHO05D006199 6.2e-288 994.6 1109 70.4
PGR004G2163 Punica granatum HOM05D004966 ORTHO05D006199 8.1e-288 994.2 1111 71.2
Phvul.003G238000 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 2.4e-287 992.6 1100 70.6
Glyma.05G102400 Glycine max HOM05D004966 ORTHO05D006199 5.2e-287 991.5 1101 70.3
VMungo0251G2147 Vigna mungo HOM05D004966 ORTHO05D006199 2.6e-286 989.2 1101 69.8
Sopen02g037320 Solanum pennellii HOM05D004966 ORTHO05D006199 3.4e-286 988.8 1108 70.3
Sed0025120 Sechium edule HOM05D004966 ORTHO05D006199 1.7e-285 986.5 1117 69.7
Rhsim08G0096300 Rhododendron simsii HOM05D004966 ORTHO05D006199 2.9e-285 985.7 1105 71.8
arahy.Tifrunner.gnm1.ann1.138YHT Arachis hypogaea HOM05D004966 ORTHO05D006199 2.5e-281 972.6 1108 68.3
THA.LOC104807611 Tarenaya hassleriana HOM05D004966 ORTHO05D006199 2.8e-280 969.1 1114 70.0
ECA238G2979 Erigeron canadensis HOM05D004966 ORTHO05D006199 7.6e-278 961.1 1117 69.8
Lj4g0015306 Lotus japonicus HOM05D004966 ORTHO05D006199 9.9e-278 960.7 1103 69.3
FvH4_1g17100 Fragaria vesca HOM05D004966 ORTHO05D006199 8.4e-277 957.6 1106 71.2
FAN19G1580 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.4e-276 956.8 1106 71.2
Oeu013276.1 Olea europaea HOM05D004966 ORTHO05D006199 3.2e-276 955.7 1104 60.1
Lalb_Chr05g0226061 Lupinus albus HOM05D004966 ORTHO05D006199 9.3e-276 954.1 1104 71.3
Sc16g0004960 Simmondsia chinensis HOM05D004966 ORTHO05D006199 1.7e-274 949.9 1105 69.0
Hund16378 Selenicereus undatus HOM05D004966 ORTHO05D006199 2.5e-273 946.0 1107 68.2
FAN26G1585 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.5e-270 935.3 1092 70.9
Migut.H00376 Erythranthe guttata HOM05D004966 ORTHO05D006199 3.8e-269 932.2 1101 68.7
MSTRG.23699 Avicennia marina HOM05D004966 ORTHO05D006199 4.9e-269 931.8 1111 68.0
FAN28G1348 Fragaria x ananassa HOM05D004966 ORTHO05D006199 1.9e-268 929.9 1107 70.5
arahy.Tifrunner.gnm1.ann1.EHFU3U Arachis hypogaea HOM05D004966 ORTHO05D006199 3.5e-267 925.6 1108 67.9
Carub.0007s0282 Capsella rubella HOM05D004966 ORTHO05D006199 1.0e-266 924.1 1111 66.6
Nn5g30492 Nelumbo nucifera HOM05D004966 ORTHO05D006199 1.0e-266 924.1 1105 69.2
GSVIVG01000163001 Vitis vinifera HOM05D004966 ORTHO05D006199 2.3e-266 922.9 1106 70.3
TAR625G0217 Trochodendron aralioides HOM05D004966 ORTHO05D006199 5.1e-266 921.8 1105 69.5
DCAR_010836 Daucus carota HOM05D004966 ORTHO05D006199 6.7e-266 921.4 1101 69.2
arahy.Tifrunner.gnm1.ann1.E3XCDG Arachis hypogaea HOM05D004966 ORTHO05D006199 8.7e-266 921.0 1111 67.6
HanXRQChr14g0441841 Helianthus annuus HOM05D004966 ORTHO05D006199 5.6e-265 918.3 1104 69.3
C01p01650 Brassica napus HOM05D004966 ORTHO05D006199 1.2e-262 910.6 1105 66.9
BolC1t00159H Brassica oleracea HOM05D004966 ORTHO05D006199 1.2e-262 910.6 1105 66.9
AL7G13330 Arabidopsis lyrata HOM05D004966 ORTHO05D006199 2.6e-262 909.4 1110 66.8
EL10Ac6g15665 Beta vulgaris HOM05D004966 ORTHO05D006199 9.9e-262 907.5 1101 67.8
Aa31LG6G14330 Aethionema arabicum HOM05D004966 ORTHO05D006199 1.3e-261 907.1 1118 66.4
Aqoxy6G02774 Aquilegia oxysepala HOM05D004966 ORTHO05D006199 7.9e-259 897.9 1103 66.8
Lj4C159G2 Lonicera japonica HOM05D004966 ORTHO05D006199 1.3e-258 897.1 1105 67.3
BcaNung05081 Brassica carinata HOM05D004966 ORTHO05D006199 1.8e-258 896.7 1101 66.4
Lsat_1_v5_gn_2_83581 Lactuca sativa HOM05D004966 ORTHO05D006199 8.7e-258 894.4 1103 68.4
A01p01480 Brassica napus HOM05D004966 ORTHO05D006199 5.6e-257 891.7 1106 66.2
MELO3C007603.2 Cucumis melo HOM05D004966 ORTHO05D006199 6.2e-256 888.3 1119 61.2
BraA01t00142Z Brassica rapa HOM05D004966 ORTHO05D006199 9.0e-255 884.4 1116 62.8
arahy.Tifrunner.gnm1.ann1.E99DR7 Arachis hypogaea HOM05D004966 ORTHO05D006199 2.6e-254 882.9 1105 65.5
AT4G37460 Arabidopsis thaliana HOM05D004966 ORTHO05D006199 4.5e-254 882.1 1108 65.6
vmacro17983 Vaccinium macrocarpon HOM05D004966 ORTHO05D006199 2.2e-253 879.8 1259 48.0
Nitab4.5_0001439g0170 Nicotiana tabacum HOM05D004966 ORTHO05D006199 4.6e-251 872.1 1108 66.9
CARHR245860 Cardamine hirsuta HOM05D004966 ORTHO05D006199 3.3e-249 865.9 1105 65.1
SGA_v2.0_scaffold15G07400 Striga asiatica HOM05D004966 ORTHO05D006199 1.6e-248 863.6 1191 46.5
BcaNung03662 Brassica carinata HOM05D004966 ORTHO05D006199 2.2e-245 853.2 1067 66.5
PSO541G4192 Papaver somniferum HOM05D004966 ORTHO05D006199 2.9e-245 852.8 1104 65.1
AUR62038275 Chenopodium quinoa HOM05D004966 ORTHO05D006199 4.6e-243 845.5 1114 65.0
PSO675G4881 Papaver somniferum HOM05D004966 ORTHO05D006199 7.9e-243 844.7 1114 65.1
CiPaw.01G008200 Carya illinoinensis HOM05D004966 ORTHO05D006199 5.1e-242 842.0 484 83.1
Psat2g169880 Pisum sativum HOM05D004966 ORTHO05D006199 6.9e-239 831.6 901 75.5
ClCG01G017250 Citrullus lanatus HOM05D004966 ORTHO05D006199 9.1e-239 831.2 1109 65.8
AUR62003963 Chenopodium quinoa HOM05D004966 ORTHO05D006199 5.9e-238 828.6 1105 65.6
Dinv30059 Davidia involucrata HOM05D004966 ORTHO05D006199 8.5e-237 824.7 971 74.5
MD15G1292200 Malus domestica HOM05D004966 ORTHO05D006199 5.2e-226 788.9 485 77.3
Phvul.002G013932 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 1.1e-225 787.7 486 78.0
CAN.G1075.3 Capsicum annuum HOM05D004966 ORTHO05D006199 7.4e-225 785.0 484 76.9
Peaxi162Scf00264g00044 Petunia axillaris HOM05D004966 ORTHO05D006199 5.7e-217 758.8 1028 59.8
CSS0020625 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 9.1e-215 751.5 825 65.9
Zm00001eb118220 Zea mays HOM05D004966 ORTHO05D006199 3.6e-211 739.6 1102 54.7
Os07g0113700 Oryza sativa ssp. japonica HOM05D004966 ORTHO05D006199 1.5e-209 734.2 1110 57.4
MBI16_g06665_MAGBIO Magnolia biondii HOM05D004966 ORTHO05D006199 3.8e-205 719.5 485 70.9
SEGI_23316 Sequoiadendron giganteum HOM05D004966 ORTHO05D006199 8.9e-194 681.8 1105 58.6
Thhalv10024286m.g Eutrema salsugineum HOM05D004966 ORTHO05D006199 6.6e-189 665.6 948 66.4
ATR0661G243 Amborella trichopoda HOM05D004966 ORTHO05D006199 8.9e-178 628.6 483 64.4
unitig_62.g23418 Utricularia gibba HOM05D004966 ORTHO05D006199 6.8e-170 602.4 1032 53.9
TAR381G1622 Trochodendron aralioides HOM05D004966 ORTHO05D006199 3.2e-159 567.0 898 66.4
Lalb_Chr16g0389071 Lupinus albus HOM05D004966 ORTHO05D006199 2.9e-144 517.3 833 69.0
Ah.03g146320 Amaranthus hybridus HOM05D004966 ORTHO05D006199 1.6e-139 501.5 447 57.3
Pp3c2_36070 Physcomitrium patens HOM05D004966 ORTHO05D006199 1.3e-131 475.3 480 50.2
Mapoly0153s0004 Marchantia polymorpha HOM05D004966 ORTHO05D006199 1.0e-128 465.7 478 50.4
Lalb_Chr16g0389061 Lupinus albus HOM05D004966 ORTHO05D006199 4.1e-114 417.2 252 76.2
Sp7g35120 Schrenkiella parvula HOM05D004966 ORTHO05D006199 2.0e-105 388.3 729 59.8
CBR_g36368 Chara braunii HOM05D004966 ORTHO05D006199 1.1e-98 365.9 537 38.0
BolC7t46655H Brassica oleracea HOM05D004966 ORTHO05D006199 3.2e-95 354.4 494 44.3
Cpa.g.sc1082.1 Carica papaya HOM05D004966 ORTHO05D006199 2.6e-92 344.7 201 80.6
MD15G1292300 Malus domestica HOM05D004966 ORTHO05D006199 4.8e-91 340.5 388 52.6
Dinv26891 Davidia involucrata HOM05D004966 ORTHO05D006199 1.8e-90 338.6 205 76.1
CAN.G1075.4 Capsicum annuum HOM05D004966 ORTHO05D006199 3.2e-82 311.2 393 49.4
Cre01.g021450 Chlamydomonas reinhardtii HOM05D004966 ORTHO05D006199 4.1e-74 284.3 453 38.0
CiPaw.01G008100 Carya illinoinensis HOM05D004966 ORTHO05D006199 2.3e-72 278.5 358 49.7
Duzib264G0118 Durio zibethinus HOM05D004966 ORTHO05D006199 4.4e-68 264.2 264 56.1
FAN23G2362 Fragaria x ananassa HOM05D004966 ORTHO05D006199 4.4e-68 264.2 390 46.4
C07p62400 Brassica napus HOM05D004966 ORTHO05D006199 6.4e-67 260.4 493 37.1
BcaNung02943 Brassica carinata HOM05D004966 ORTHO05D006199 2.1e-62 245.4 165 73.3
Cpa.g.sc6.59 Carica papaya HOM05D004966 ORTHO05D006199 7.8e-57 226.9 206 60.7
Cpa.g.sc6.60 Carica papaya HOM05D004966 ORTHO05D006199 1.2e-44 186.4 99 85.9
BcaNung02944 Brassica carinata HOM05D004966 ORTHO05D006199 1.6e-41 176.0 133 61.7
A03p65150 Brassica napus HOM05D004966 ORTHO05D006199 6.6e-40 170.6 129 65.1
BraA03t15573Z Brassica rapa HOM05D004966 ORTHO05D006199 1.1e-39 169.9 129 65.1
CSS0022043 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.6e-39 167.5 112 76.8
CSS0040429 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 4.0e-37 161.4 92 83.7
Glyma.11G051067 Glycine max HOM05D004966 ORTHO05D006199 1.2e-36 159.8 123 70.7
Ah.03g146310 Amaranthus hybridus HOM05D004966 ORTHO05D006199 2.0e-36 159.1 92 79.3
Glyma.11G051133 Glycine max HOM05D004966 ORTHO05D006199 4.9e-35 154.5 183 47.5
BcaNung02945 Brassica carinata HOM05D004966 ORTHO05D006199 2.8e-30 138.7 92 70.7
Phvul.002G013866 Phaseolus vulgaris HOM05D004966 ORTHO05D006199 8.1e-30 137.1 185 47.0
RcHm_v2.0_Chr1g0315291 Rosa chinensis HOM05D004966 ORTHO05D006199 1.2e-28 133.3 83 81.9
CSS0006661 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 3.8e-27 128.3 79 73.4
BcaNung02055 Brassica carinata HOM05D004966 ORTHO05D006199 2.3e-24 119.0 105 61.0
Oeu011609.3 Olea europaea HOM05D004966 ORTHO05D006199 1.5e-20 106.3 134 44.8
ATR0030G036 Amborella trichopoda HOM05D004966 ORTHO05D006199 1.6e-14 86.3 120 40.8
CBR_g36362 Chara braunii HOM05D004966 ORTHO05D006199 2.2e-11 75.9 199 29.6
Lsat_1_v5_gn_8_118440 Lactuca sativa HOM05D004966 ORTHO05D231273 7.9e-09 67.4 49 53.1
CSS0024681 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 5.1e-08 64.7 43 74.4
ATR0030G038 Amborella trichopoda HOM05D047453 ORTHO05D006199 7.4e-07 60.8 146 33.6
HanXRQChr06g0176501 Helianthus annuus HOM05D004966 ORTHO05D006199 2.8e-06 58.9 39 71.8
CSS0029353 Camellia sinensis var. sinensis HOM05D004966 ORTHO05D006199 8.2e-06 57.4 193 30.1


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