Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G040000 Populus trichocarpa HOM05D005402 ORTHO05D007036 0.0e+00 1267.7 644 100.0
Sabra07G0036200 Salix brachista HOM05D005402 ORTHO05D007036 0.0e+00 1148.3 649 90.4
Manes.16G005300 Manihot esculenta HOM05D005402 ORTHO05D007036 2.0e-262 909.1 657 68.9
Atru.chr10.2252 Acer truncatum HOM05D005402 ORTHO05D007036 5.2e-255 884.4 658 67.8
Haze_06819 Corylus avellana HOM05D005402 ORTHO05D007036 2.0e-254 882.5 659 68.7
Cfa000204 Carpinus fangiana HOM05D005402 ORTHO05D007036 9.9e-254 880.2 658 68.8
Thecc.06G223300 Theobroma cacao HOM05D005402 ORTHO05D007036 1.2e-248 863.2 657 66.2
Dinv13911 Davidia involucrata HOM05D005402 ORTHO05D007036 2.1e-248 862.4 660 66.5
Ciclev10014465m.g Citrus clementina HOM05D005402 ORTHO05D007036 4.7e-248 861.3 658 67.2
GSVIVG01012705001 Vitis vinifera HOM05D005402 ORTHO05D007036 6.8e-247 857.4 659 66.2
CSS0005702 Camellia sinensis var. sinensis HOM05D005402 ORTHO05D007036 2.9e-245 852.0 657 67.0
Duzib235G0987 Durio zibethinus HOM05D005402 ORTHO05D007036 1.9e-244 849.4 657 65.4
Prupe.4G224400 Prunus persica HOM05D005402 ORTHO05D007036 7.8e-243 844.0 652 65.8
Hma1.2p1_0412F.1_g147300 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.3e-242 842.4 652 64.9
Gohir.D05G174500 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.4e-239 833.2 657 64.2
Gohir.A05G171400 Gossypium hirsutum HOM05D005402 ORTHO05D007036 1.8e-239 832.8 657 64.2
QL05p072729 Quercus lobata HOM05D005402 ORTHO05D007036 9.0e-239 830.5 658 65.3
THA.LOC104806309 Tarenaya hassleriana HOM05D005402 ORTHO05D007036 1.2e-238 830.1 654 65.1
Gorai.009G179800 Gossypium raimondii HOM05D005402 ORTHO05D007036 6.4e-237 824.3 657 64.1
ClCG01G021860 Citrullus lanatus HOM05D005402 ORTHO05D007036 4.2e-236 821.6 657 63.8
Glyma.17G012200 Glycine max HOM05D005402 ORTHO05D007036 4.6e-235 818.1 658 63.8
PGR004G0080 Punica granatum HOM05D005402 ORTHO05D007036 4.6e-235 818.1 653 62.9
RcHm_v2.0_Chr7g0223851 Rosa chinensis HOM05D005402 ORTHO05D007036 1.3e-234 816.6 657 64.4
COL.COLO4_31795 Corchorus olitorius HOM05D005402 ORTHO05D007036 3.0e-234 815.5 657 63.0
FAN18G2172 Fragaria x ananassa HOM05D005402 ORTHO05D007036 2.1e-232 809.3 657 63.6
FAN08G3587 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.4e-231 806.6 657 63.6
CsaV3_6G048920 Cucumis sativus L. HOM05D005402 ORTHO05D007036 4.0e-231 805.1 657 62.1
MELO3C007401.2 Cucumis melo HOM05D005402 ORTHO05D007036 2.0e-230 802.7 657 62.1
Sed0000438 Sechium edule HOM05D005402 ORTHO05D007036 4.5e-230 801.6 656 62.8
vmacro15795 Vaccinium macrocarpon HOM05D005402 ORTHO05D007036 2.9e-229 798.9 661 60.7
TAR629G0778 Trochodendron aralioides HOM05D005402 ORTHO05D007036 8.4e-229 797.3 661 62.6
FAN04G1555 Fragaria x ananassa HOM05D005402 ORTHO05D007036 1.9e-228 796.2 657 62.6
AL7G24400 Arabidopsis lyrata HOM05D005402 ORTHO05D007036 2.4e-228 795.8 660 63.6
Aa31LG6G3970 Aethionema arabicum HOM05D005402 ORTHO05D007036 4.2e-228 795.0 652 63.3
Ca_21074_v3 Cicer arietinum L. HOM05D005402 ORTHO05D007036 7.1e-228 794.3 660 62.1
Nn1g07183 Nelumbo nucifera HOM05D005402 ORTHO05D007036 9.3e-228 793.9 661 62.2
FAN13G2175 Fragaria x ananassa HOM05D005402 ORTHO05D007036 3.5e-227 792.0 657 61.8
Medtr4g132340 Medicago truncatula HOM05D005402 ORTHO05D007036 3.5e-227 792.0 657 61.6
Glyma.07G261900 Glycine max HOM05D005402 ORTHO05D007036 6.7e-226 787.7 660 61.5
TPR.G36999 Trifolium pratense HOM05D005402 ORTHO05D007036 6.7e-226 787.7 657 62.1
Dinv20063 Davidia involucrata HOM05D005402 ORTHO05D007036 1.9e-225 786.2 660 62.1
Phvul.003G080200 Phaseolus vulgaris HOM05D005402 ORTHO05D007036 2.1e-224 782.7 659 60.4
CANSAT56G4097 Cannabis sativa HOM05D005402 ORTHO05D007036 3.7e-224 781.9 652 62.0
Eucgr.D01347 Eucalyptus grandis HOM05D005402 ORTHO05D007036 4.8e-224 781.6 657 60.7
CARHR235910 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.1e-223 778.9 656 62.0
VMungo1215G1509 Vigna mungo HOM05D005402 ORTHO05D007036 3.1e-223 778.9 655 60.9
PGSC0003DMG400022060 Solanum tuberosum HOM05D005402 ORTHO05D007036 4.0e-223 778.5 660 61.5
Sopen02g011290 Solanum pennellii HOM05D005402 ORTHO05D007036 1.2e-222 776.9 655 61.7
Sp7g26160 Schrenkiella parvula HOM05D005402 ORTHO05D007036 3.4e-222 775.4 660 61.2
FvH4_5g29980 Fragaria vesca HOM05D005402 ORTHO05D007036 9.9e-222 773.9 657 61.9
Oeu040335.1 Olea europaea HOM05D005402 ORTHO05D007036 9.9e-222 773.9 655 61.2
MSTRG.7199 Avicennia marina HOM05D005402 ORTHO05D007036 4.9e-221 771.5 660 59.8
Solyc02g032920.3 Solanum lycopersicum HOM05D005402 ORTHO05D007036 6.4e-221 771.2 655 61.2
Migut.M01334 Erythranthe guttata HOM05D005402 ORTHO05D007036 8.4e-221 770.8 649 61.0
arahy.Tifrunner.gnm1.ann1.I0ZCH2 Arachis hypogaea HOM05D005402 ORTHO05D007036 1.4e-220 770.0 657 60.3
Carub.0007s1256 Capsella rubella HOM05D005402 ORTHO05D007036 1.9e-220 769.6 663 60.6
Psat4g006080 Pisum sativum HOM05D005402 ORTHO05D007036 2.4e-220 769.2 667 60.1
arahy.Tifrunner.gnm1.ann1.T40CTJ Arachis hypogaea HOM05D005402 ORTHO05D007036 4.2e-220 768.5 657 60.4
HanXRQChr15g0470411 Helianthus annuus HOM05D005402 ORTHO05D007036 2.3e-218 762.7 652 60.4
CAN.G128.67 Capsicum annuum HOM05D005402 ORTHO05D007036 3.0e-218 762.3 655 60.6
BcaC07g38316 Brassica carinata HOM05D005402 ORTHO05D007036 8.7e-218 760.8 655 60.9
DCAR_028193 Daucus carota HOM05D000001 ORTHO05D007036 8.7e-218 760.8 680 58.7
C08p10670 Brassica napus HOM05D005402 ORTHO05D007036 1.5e-217 760.0 655 60.8
BolC8t48740H Brassica oleracea HOM05D005402 ORTHO05D007036 5.6e-217 758.1 655 60.8
A08p20200 Brassica napus HOM05D005402 ORTHO05D007036 7.4e-217 757.7 659 60.5
BraA08t33979Z Brassica rapa HOM05D005402 ORTHO05D007036 7.4e-217 757.7 659 60.5
Cc09_g01510 Coffea canephora HOM05D005402 ORTHO05D007036 1.6e-216 756.5 648 59.3
Hund23456 Selenicereus undatus HOM05D005402 ORTHO05D007036 3.1e-215 752.3 652 57.4
PSO675G3880 Papaver somniferum HOM05D005402 ORTHO05D007036 1.2e-214 750.4 660 58.5
BcaB03g12558 Brassica carinata HOM05D005402 ORTHO05D007036 3.4e-214 748.8 641 61.5
PSO541G1465 Papaver somniferum HOM05D005402 ORTHO05D007036 3.8e-213 745.3 660 58.0
Nitab4.5_0000005g0240 Nicotiana tabacum HOM05D005402 ORTHO05D007036 8.4e-213 744.2 631 61.6
MBI02_g15380_MAGBIO Magnolia biondii HOM05D005402 ORTHO05D007036 1.1e-212 743.8 665 58.8
TWI63G0339 Tripterygium wilfordii HOM05D005402 ORTHO05D007036 1.4e-212 743.4 652 60.0
SalBow8G4792 Salvia bowleyana HOM05D005402 ORTHO05D007036 3.2e-212 742.3 650 57.8
Lsat_1_v5_gn_7_16460 Lactuca sativa HOM05D005402 ORTHO05D007036 2.1e-211 739.6 657 59.7
Nitab4.5_0004712g0050 Nicotiana tabacum HOM05D005402 ORTHO05D007036 4.6e-211 738.4 631 60.7
AT4G28200 Arabidopsis thaliana HOM05D005402 ORTHO05D007036 1.9e-209 733.0 658 60.0
Peaxi162Scf00307g01422 Petunia axillaris HOM05D005402 ORTHO05D007036 3.3e-209 732.3 664 59.0
MD15G1066800 Malus domestica HOM05D005402 ORTHO05D007036 5.7e-209 731.5 663 57.9
Lj4g0015196 Lotus japonicus HOM05D005402 ORTHO05D007036 3.7e-208 728.8 657 58.4
Thhalv10024642m.g Eutrema salsugineum HOM05D005402 ORTHO05D007036 8.2e-208 727.6 655 59.4
ECA236G3723 Erigeron canadensis HOM05D005402 ORTHO05D000490 4.5e-206 721.8 655 58.6
AUR62015290 Chenopodium quinoa HOM05D005402 ORTHO05D007036 4.2e-204 715.3 655 56.2
Lalb_Chr07g0177141 Lupinus albus HOM05D005402 ORTHO05D007036 6.1e-203 711.4 657 56.6
Peaxi162Scf00394g00020 Petunia axillaris HOM05D005402 ORTHO05D007036 3.0e-202 709.1 655 58.9
Ah.10g032740 Amaranthus hybridus HOM05D005402 ORTHO05D007036 1.2e-198 697.2 647 53.8
Aqoxy1G03121 Aquilegia oxysepala HOM05D005402 ORTHO05D007036 8.5e-197 691.0 659 54.5
MD08G1079900 Malus domestica HOM05D005402 ORTHO05D007036 2.5e-196 689.5 658 56.5
Lj2C266G9 Lonicera japonica HOM05D005402 ORTHO05D007036 1.2e-195 687.2 650 57.1
AUR62032734 Chenopodium quinoa HOM05D005402 ORTHO05D007036 1.0e-194 684.1 663 53.7
Actinidia11859 Actinidia chinensis HOM05D005402 ORTHO05D007036 3.2e-188 662.5 654 55.4
Os02g0103900 Oryza sativa ssp. japonica HOM05D005402 ORTHO05D007036 2.1e-187 659.8 688 51.9
unitig_748.g7549 Utricularia gibba HOM05D005402 ORTHO05D007036 1.7e-184 650.2 646 54.8
CiPaw.09G093500 Carya illinoinensis HOM05D005402 ORTHO05D007036 5.9e-182 641.7 515 64.9
CDE05G1008 Ceratophyllum demersum HOM05D005402 ORTHO05D007036 5.0e-181 638.6 645 52.7
HPP92_012414 Vanilla planifolia HOM05D005402 ORTHO05D007036 2.5e-180 636.3 653 50.2
ATR0743G102 Amborella trichopoda HOM05D005402 ORTHO05D007036 2.0e-177 626.7 655 51.6
Hma1.2p1_0412F.1_g147310 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 2.9e-173 612.8 487 62.8
BcaB03g12559 Brassica carinata HOM05D005402 ORTHO05D007036 4.3e-140 502.7 421 62.5
Zm00001eb118290 Zea mays HOM05D005402 ORTHO05D007036 5.4e-135 485.7 519 49.9
SGA_v2.0_scaffold7G03813 Striga asiatica HOM05D005402 ORTHO05D007036 6.0e-126 455.7 484 50.0
SGA_v2.0_scaffold4G01907 Striga asiatica HOM05D005402 ORTHO05D007036 1.7e-125 454.1 611 43.7
Mapoly0165s0012 Marchantia polymorpha HOM05D005402 ORTHO05D007036 3.6e-123 446.4 663 40.0
Sc05g0009280 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.3e-120 438.0 359 61.3
EL10Ac3g06734 Beta vulgaris HOM05D005402 ORTHO05D007036 9.3e-119 431.8 358 61.5
SMO203G0067 Selaginella moellendorffii HOM05D005402 ORTHO05D007036 1.3e-115 421.4 638 38.2
Pp3c5_4450 Physcomitrium patens HOM05D005402 ORTHO05D007036 1.9e-103 380.9 646 36.2
AagrBONN_evm.TU.Sc2ySwM_228.882 Anthoceros agrestis HOM05D005402 ORTHO05D007036 3.7e-91 340.1 496 39.5
Cpa.g.sc1199.5 Carica papaya HOM05D005402 ORTHO05D007036 1.7e-88 331.3 269 59.1
Sc05g0009290 Simmondsia chinensis HOM05D005402 ORTHO05D007036 1.5e-84 318.2 284 56.7
SEGI_35740 Sequoiadendron giganteum HOM05D005402 ORTHO05D007036 1.4e-82 311.6 365 46.6
CBR_g31384 Chara braunii HOM05D005402 ORTHO05D007036 1.2e-73 282.0 762 28.1
Cre10.g442000 Chlamydomonas reinhardtii HOM05D005402 ORTHO05D007036 3.2e-71 273.9 698 30.2
EL10Ac3g06733 Beta vulgaris HOM05D005402 ORTHO05D007036 5.5e-71 273.1 365 42.2
RcHm_v2.0_Chr7g0223961 Rosa chinensis HOM05D005402 ORTHO05D007036 5.5e-63 246.5 277 48.0
CAN.G23.24 Capsicum annuum HOM05D005402 ORTHO05D007036 1.7e-59 235.0 271 48.7
RcHm_v2.0_Chr6g0291751 Rosa chinensis HOM05D005402 ORTHO05D007036 1.6e-46 191.8 233 50.2
SHI32968 Sapria himalayana HOM05D005402 ORTHO05D007036 7.5e-36 156.4 232 40.5
RcHm_v2.0_Chr7g0223941 Rosa chinensis HOM05D005402 ORTHO05D007036 1.9e-31 141.7 81 75.3
MCO01G148 Micromonas commoda HOM05D005402 ORTHO05D007036 1.7e-24 118.6 214 34.1
AagrBONN_evm.TU.Sc2ySwM_228.888 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.6e-24 116.3 134 43.3
SalBow7G0548 Salvia bowleyana HOM05D005402 ORTHO05D037500 1.1e-21 109.4 101 56.4
CARHR228840 Cardamine hirsuta HOM05D005402 ORTHO05D007036 3.1e-21 107.8 65 84.6
Zm00001eb129750 Zea mays HOM05D005402 ORTHO05D007036 4.0e-21 107.5 212 34.0
AagrBONN_evm.TU.Sc2ySwM_228.894 Anthoceros agrestis HOM05D005402 ORTHO05D007036 8.9e-21 106.3 86 51.2
RcHm_v2.0_Chr7g0223951 Rosa chinensis HOM05D005402 ORTHO05D007036 1.2e-20 105.9 127 51.2
SalBow5G5666 Salvia bowleyana HOM05D005402 ORTHO05D037500 7.6e-20 103.2 80 63.8
AagrBONN_evm.TU.Sc2ySwM_228.885 Anthoceros agrestis HOM05D005402 ORTHO05D007036 4.9e-19 100.5 116 43.1
SalBow1G2367 Salvia bowleyana HOM05D005402 ORTHO05D037500 4.9e-19 100.5 75 65.3
Cfa022130 Carpinus fangiana HOM05D005402 ORTHO05D007036 1.4e-18 99.0 183 34.4
A01p19620 Brassica napus HOM05D005402 ORTHO05D007036 8.6e-16 89.7 97 54.6
Hma1.2p1_0660F.1_g197590 Hydrangea macrophylla HOM05D005402 ORTHO05D007036 8.1e-14 83.2 68 60.3
Zm00001eb238100 Zea mays HOM05D005402 ORTHO05D007036 1.7e-11 75.5 88 47.7
VMungo1215G1513 Vigna mungo HOM05D005402 ORTHO05D433923 1.3e-06 59.3 41 78.0


User provided reference genes

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