Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.1e-179 633.3 342 100.0
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.4e-158 563.1 343 90.1
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 1.2e-157 560.1 372 83.6
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 8.6e-148 527.3 343 84.5
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.2e-146 523.5 342 83.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.3e-143 513.5 344 82.0
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.9e-142 509.6 343 80.2
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 2.4e-142 509.2 343 80.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 2.4e-142 509.2 341 80.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 3.2e-142 508.8 343 81.6
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 3.5e-141 505.4 341 81.2
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 6.0e-141 504.6 341 81.5
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.8e-141 504.2 344 79.9
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.7e-140 503.1 341 80.6
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 1.5e-139 500.0 341 79.2
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.6e-138 496.5 341 79.8
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 1.1e-137 493.8 333 80.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 3.1e-137 492.3 331 81.3
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 4.0e-137 491.9 343 78.1
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 4.0e-137 491.9 343 78.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 5.2e-137 491.5 343 77.3
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.5e-136 490.0 341 78.0
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 2.0e-136 489.6 333 79.6
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.0e-136 489.6 343 76.7
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.4e-136 488.8 343 77.6
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.4e-136 488.8 343 77.6
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 4.4e-136 488.4 335 77.3
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.4e-136 488.4 343 77.6
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 7.6e-136 487.6 345 78.6
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.2e-135 486.1 343 75.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 4.9e-135 485.0 343 77.0
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.4e-135 484.6 345 76.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 1.1e-134 483.8 341 75.1
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.4e-134 482.6 343 77.0
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 7.1e-134 481.1 340 77.6
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.2e-133 480.3 341 76.2
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.3e-132 476.9 345 75.4
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 1.7e-132 476.5 341 75.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 3.9e-132 475.3 343 76.1
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 3.9e-132 475.3 333 78.1
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 6.6e-132 474.6 341 76.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 4.3e-131 471.9 345 74.5
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 1.6e-130 469.9 344 73.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.4e-129 466.8 341 74.5
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.2e-129 464.9 315 79.4
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.9e-129 464.5 344 72.7
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 2.0e-128 463.0 341 73.9
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 4.4e-128 461.8 341 73.6
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 6.4e-127 458.0 319 79.3
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 6.4e-127 458.0 341 73.0
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 1.4e-126 456.8 341 73.0
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 1.2e-125 453.8 343 73.8
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 3.5e-125 452.2 345 71.6
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 3.0e-124 449.1 345 73.6
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 3.9e-124 448.7 343 72.0
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 3.9e-124 448.7 343 71.1
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 5.1e-124 448.4 341 72.4
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 6.6e-124 448.0 340 72.4
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.6e-124 448.0 345 73.6
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 3.6e-122 442.2 341 72.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 4.0e-121 438.7 342 71.9
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.2e-120 437.2 341 70.1
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 1.4e-118 430.3 341 69.2
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.7e-117 426.0 342 70.2
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.8e-116 423.3 345 70.4
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 5.1e-116 421.8 345 68.1
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 8.7e-116 421.0 341 67.7
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.9e-115 419.9 343 69.7
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 5.6e-115 418.3 331 70.7
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.6e-115 418.3 339 68.7
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 9.6e-115 417.5 319 73.4
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.7e-114 415.6 341 68.9
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.1e-113 414.1 343 67.9
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 3.1e-113 412.5 328 71.0
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 6.9e-113 411.4 342 68.7
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 6.9e-113 411.4 285 77.5
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.6e-112 407.9 342 68.4
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 2.9e-111 406.0 342 66.4
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 8.4e-111 404.4 341 67.7
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 9.3e-110 401.0 345 67.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 1.2e-109 400.6 390 61.5
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.6e-109 400.2 343 67.1
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 2.3e-108 396.4 339 65.5
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 6.2e-106 388.3 334 66.2
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 8.2e-106 387.9 343 63.0
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.8e-105 386.7 341 65.1
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 1.7e-103 380.2 287 71.8
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.5e-102 376.3 345 61.7
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 5.5e-102 375.2 287 72.1
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 9.3e-102 374.4 342 62.6
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.6e-101 372.1 343 63.3
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.6e-101 372.1 343 63.3
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 7.9e-101 371.3 342 64.3
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.9e-100 369.0 343 62.1
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 1.5e-99 367.1 343 61.2
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 4.3e-99 365.5 343 61.2
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 9.7e-99 364.4 371 59.0
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 1.3e-98 364.0 317 65.3
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-98 364.0 261 74.7
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.2e-98 363.2 343 59.5
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.6e-96 356.3 336 61.6
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 5.9e-96 355.1 327 59.6
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.0e-95 352.1 350 59.1
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 5.0e-95 352.1 343 58.9
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 8.5e-95 351.3 346 59.0
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.9e-94 350.1 344 61.3
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.9e-94 350.1 325 60.0
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.2e-93 347.4 341 60.1
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 2.7e-93 346.3 369 57.7
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.8e-92 343.6 344 58.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 1.9e-91 340.1 347 58.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 1.1e-89 334.3 338 59.5
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.4e-88 329.3 326 58.9
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.9e-87 326.2 322 58.7
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 2.9e-87 326.2 338 58.3
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.8e-87 325.9 322 59.6
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.1e-86 324.3 345 55.7
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.7e-85 319.7 342 56.4
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.7e-85 319.7 342 56.4
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 6.1e-85 318.5 342 56.1
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.1e-84 315.5 342 55.6
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 5.1e-84 315.5 292 61.0
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 1.5e-83 313.9 328 58.5
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 2.4e-81 306.6 343 53.4
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.5e-80 303.9 342 55.6
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.6e-80 303.1 340 52.1
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.4e-80 302.8 345 54.5
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.4e-80 302.8 284 63.0
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-79 301.2 328 55.8
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 1.3e-79 300.8 343 54.2
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 7.2e-78 295.0 343 51.9
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 9.4e-78 294.7 311 57.6
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 2.7e-77 293.1 323 55.4
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 4.7e-77 292.4 322 55.3
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 3.3e-75 286.2 339 53.7
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 4.8e-74 282.3 284 60.2
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 6.3e-74 282.0 321 53.3
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 8.2e-74 281.6 339 53.4
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.6e-72 276.6 328 50.9
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 1.0e-71 274.6 302 56.6
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.9e-71 273.1 207 72.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 3.2e-70 269.6 280 58.2
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.2e-70 269.6 345 49.6
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.2e-70 269.2 292 56.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 1.6e-69 267.3 343 49.3
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 4.0e-68 262.7 255 59.6
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 5.7e-67 258.8 290 52.8
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 8.0e-61 238.4 337 43.6
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.4e-60 237.7 346 39.6
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 1.4e-60 237.7 322 46.9
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 6.8e-60 235.3 287 50.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 6.3e-58 228.8 138 91.3
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 2.0e-56 223.8 351 44.2
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.7e-56 223.4 293 45.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.3e-55 220.3 343 38.5
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 1.1e-54 218.0 349 43.3
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 2.6e-51 206.8 230 53.9
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 7.5e-51 205.3 252 50.8
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.6e-43 180.3 158 67.7
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 2.6e-43 180.3 229 48.9
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 7.5e-43 178.7 155 65.2
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 8.3e-42 175.3 185 53.0
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 5.0e-39 166.0 303 42.6
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 5.2e-36 156.0 280 40.0
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 8.6e-31 138.7 292 38.4
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.5e-30 137.9 320 36.9
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 1.7e-26 124.4 145 53.1
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 7.1e-25 119.0 228 38.2
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 7.1e-25 119.0 228 38.2
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.4e-19 100.1 127 53.5
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 4.6e-16 89.7 292 31.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 3.0e-15 87.0 55 83.6
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 3.9e-15 86.7 111 52.3
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 6.6e-15 85.9 50 92.0
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 1.6e-08 64.7 131 42.0
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 2.1e-08 64.3 125 40.8
C09p13680 Brassica napus HOM05D001533 ORTHO05D019802 9.6e-06 55.5 125 36.8


User provided reference genes

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