Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 0.0e+00 1147.9 636 100.0
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 1.2e-267 926.4 687 78.3
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.5e-233 813.1 643 73.7
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 5.6e-217 758.1 648 68.5
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 4.5e-118 429.5 649 46.1
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 9.5e-116 421.8 635 49.4
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 4.6e-110 402.9 645 44.7
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 2.7e-102 377.1 644 44.4
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.5e-97 361.3 653 45.0
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.4e-95 354.8 522 43.3
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.6e-94 351.3 638 42.9
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 1.6e-94 351.3 638 42.5
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 2.7e-94 350.5 662 42.3
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 1.5e-92 344.7 659 43.6
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.8e-91 340.5 640 42.0
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 8.9e-90 335.5 651 42.4
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 6.4e-88 329.3 695 40.3
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 4.6e-86 323.2 634 41.5
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.1e-84 318.5 697 38.6
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 4.4e-81 306.6 628 40.3
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 9.9e-81 305.4 648 39.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 2.4e-79 300.8 493 45.8
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 3.5e-78 297.0 656 39.6
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 3.3e-76 290.4 644 36.8
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 1.6e-75 288.1 447 43.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.6e-75 288.1 672 38.5
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 2.1e-75 287.7 636 39.5
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 3.6e-75 287.0 637 38.3
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 6.9e-74 282.7 716 36.0
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.5e-73 281.6 667 38.7
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.0e-73 281.2 604 38.4
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 2.6e-73 280.8 646 39.8
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 4.5e-73 280.0 637 36.3
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 7.6e-73 279.3 585 39.0
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 9.9e-73 278.9 601 37.3
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 2.2e-72 277.7 639 37.4
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 3.8e-72 276.9 636 39.8
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 3.2e-71 273.9 601 38.1
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.6e-70 271.6 522 40.6
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 5.6e-68 263.1 676 38.2
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 8.1e-67 259.2 634 37.5
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.2e-65 255.4 635 36.2
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 4.5e-65 253.4 612 41.5
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 5.8e-65 253.1 600 38.5
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 9.9e-65 252.3 565 41.2
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.5e-63 246.5 668 35.8
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 9.3e-63 245.7 642 33.2
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 6.0e-62 243.0 668 37.4
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 3.9e-61 240.4 512 37.7
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 4.3e-60 236.9 648 35.3
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 5.6e-60 236.5 625 34.6
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 5.6e-60 236.5 671 36.5
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 3.7e-59 233.8 628 33.9
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.9e-58 229.6 347 49.0
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 3.4e-57 227.3 615 34.3
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 4.9e-56 223.4 522 35.2
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 1.4e-55 221.9 677 34.3
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 1.2e-54 218.8 635 35.1
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 2.1e-54 218.0 323 43.0
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 7.9e-54 216.1 805 29.4
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 1.3e-53 215.3 529 37.4
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 5.1e-53 213.4 631 35.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 6.7e-53 213.0 576 35.1
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 8.7e-53 212.6 576 35.2
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 8.7e-53 212.6 576 35.2
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 1.1e-52 212.2 628 34.9
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.5e-52 211.1 627 33.8
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 5.7e-52 209.9 631 33.3
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 1.6e-51 208.4 587 33.6
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 2.8e-51 207.6 648 34.3
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 4.8e-51 206.8 524 33.8
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 4.8e-51 206.8 321 43.6
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 8.2e-51 206.1 318 45.0
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 1.4e-50 205.3 318 47.8
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 1.4e-50 205.3 318 47.8
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 2.4e-50 204.5 321 43.3
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 3.1e-50 204.1 518 36.9
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 3.4e-49 200.7 621 31.4
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 7.6e-49 199.5 410 37.6
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 1.3e-48 198.7 626 30.4
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-47 195.3 332 41.0
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.4e-47 195.3 499 35.5
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 1.9e-47 194.9 304 44.7
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 2.5e-47 194.5 325 46.2
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 3.2e-47 194.1 646 31.4
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 4.2e-47 193.7 573 35.3
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 2.7e-46 191.0 606 29.5
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 3.9e-45 187.2 377 40.8
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 5.1e-45 186.8 511 36.2
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 9.7e-44 182.6 633 30.5
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 9.7e-44 182.6 621 30.9
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.1e-42 179.1 311 39.2
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.4e-42 177.9 558 34.6
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 5.3e-42 176.8 627 32.9
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 9.1e-42 176.0 691 28.4
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.5e-41 175.3 224 47.8
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 3.4e-41 174.1 646 31.9
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 3.8e-40 170.6 647 33.1
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 9.4e-39 166.0 331 41.7
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 3.6e-38 164.1 606 30.0
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 1.5e-36 158.7 342 38.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.7e-35 154.1 491 32.0
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.4e-34 151.4 565 30.6
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 5.3e-34 150.2 341 38.4
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 2.6e-33 147.9 642 31.5
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 8.5e-32 142.9 487 32.9
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 5.5e-31 140.2 615 28.6
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 1.6e-30 138.7 205 41.5
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 5.2e-29 133.7 450 30.2
Rhsim09G0061700 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.2e-29 133.7 485 29.9
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 2.0e-28 131.7 335 34.3
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 9.1e-26 122.9 435 29.7
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 1.0e-24 119.4 687 26.9
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 6.5e-24 116.7 171 53.8
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 3.2e-23 114.4 220 32.3
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 3.6e-22 110.9 370 28.4
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 1.4e-21 109.0 210 43.8
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 1.8e-21 108.6 349 32.4
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 3.0e-21 107.8 252 31.0
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.6e-20 104.8 307 30.0
Zm00001eb067810 Zea mays HOM05D005642 ORTHO05D006672 1.8e-18 98.6 173 34.7
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 2.7e-17 94.7 450 25.1
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 4.5e-17 94.0 327 30.9
unitig_747.g21903 Utricularia gibba HOM05D005642 ORTHO05D006672 4.5e-17 94.0 161 38.5
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 8.5e-16 89.7 122 45.9
Cpa.g.sc23.6 Carica papaya HOM05D005642 ORTHO05D006672 2.0e-12 78.6 172 39.5
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 2.6e-12 78.2 324 26.9
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 2.6e-12 78.2 345 26.7
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 5.7e-12 77.0 80 51.2
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 3.7e-11 74.3 217 30.4
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 1.4e-10 72.4 210 34.8
DCAR_000668 Daucus carota HOM05D005642 ORTHO05D006672 3.1e-10 71.2 482 25.3
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 4.1e-10 70.9 98 43.9
Rhsim09G0062600 Rhododendron simsii HOM05D005642 ORTHO05D006672 5.4e-10 70.5 143 37.1
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.0e-08 66.2 263 43.3
Potri.010G244700 Populus trichocarpa HOM05D003044 ORTHO05D001869 2.9e-08 64.7 382 25.4
MD02G1257800 Malus domestica HOM05D003044 ORTHO05D001869 3.8e-08 64.3 435 23.9
CDE07G1072 Ceratophyllum demersum HOM05D003044 ORTHO05D001869 5.0e-08 63.9 269 27.5
MBI11_g01313_MAGBIO Magnolia biondii HOM05D003044 ORTHO05D001869 5.0e-08 63.9 269 26.4
Gohir.D04G018900 Gossypium hirsutum HOM05D003044 ORTHO05D001869 6.5e-08 63.5 265 27.9
MD07G1063100 Malus domestica HOM05D003044 ORTHO05D001869 6.5e-08 63.5 432 24.5
BcaC04g20718 Brassica carinata HOM05D004008 ORTHO05D027220 8.6e-08 63.2 91 37.4
Gorai.012G022400 Gossypium raimondii HOM05D003044 ORTHO05D001869 8.6e-08 63.2 265 27.9
Ciclev10014057m.g Citrus clementina HOM05D003044 ORTHO05D001869 1.5e-07 62.4 494 23.5
RcHm_v2.0_Chr1g0332241 Rosa chinensis HOM05D003044 ORTHO05D001869 1.9e-07 62.0 263 31.9
arahy.Tifrunner.gnm1.ann1.T032QQ Arachis hypogaea HOM05D005642 ORTHO05D010845 2.5e-07 61.6 74 45.9
Thecc.10G119700 Theobroma cacao HOM05D003044 ORTHO05D001869 3.3e-07 61.2 457 24.3
TAR636G1345 Trochodendron aralioides HOM05D003044 ORTHO05D001869 3.3e-07 61.2 253 26.9
Prupe.2G074800 Prunus persica HOM05D003044 ORTHO05D001869 4.2e-07 60.8 258 27.5
CiPaw.13G045500 Carya illinoinensis HOM05D003044 ORTHO05D001869 5.5e-07 60.5 270 29.6
Lj6g0024518 Lotus japonicus HOM05D003044 ORTHO05D001869 9.5e-07 59.7 260 29.6
TAR633G1492 Trochodendron aralioides HOM05D003044 ORTHO05D001869 9.5e-07 59.7 470 24.5
Sabra08G0009300 Salix brachista HOM05D003044 ORTHO05D001869 1.6e-06 58.9 290 24.5
Sed0023754 Sechium edule HOM05D003044 ORTHO05D001869 2.8e-06 58.2 250 24.4
CANSAT56G3871 Cannabis sativa HOM05D003044 ORTHO05D001869 4.7e-06 57.4 284 28.5
Potri.008G014800 Populus trichocarpa HOM05D003044 ORTHO05D001869 4.7e-06 57.4 380 23.2
Gohir.A05G396100 Gossypium hirsutum HOM05D003044 ORTHO05D001869 8.0e-06 56.6 263 28.5
Sopen11g002290 Solanum pennellii HOM05D003044 ORTHO05D001869 8.0e-06 56.6 253 28.9


User provided reference genes

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