Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 4.7e-238 827.4 402 100.0
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 1.8e-213 745.7 399 89.7
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 5.1e-208 727.6 399 86.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 2.8e-206 721.8 399 85.7
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 2.8e-206 721.8 399 85.7
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 2.6e-188 662.1 399 77.9
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 9.7e-183 643.7 399 74.9
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 3.7e-182 641.7 401 75.1
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 1.1e-181 640.2 399 73.4
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 6.9e-181 637.5 394 74.6
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 7.7e-180 634.0 398 73.6
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 8.5e-179 630.6 399 73.2
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.4e-178 629.8 399 72.9
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 7.2e-178 627.5 399 72.2
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.2e-177 626.7 401 74.1
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 6.1e-177 624.4 399 72.9
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 7.9e-177 624.0 400 74.2
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 7.9e-177 624.0 400 74.0
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 2.3e-176 622.5 399 72.7
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 6.7e-176 620.9 400 73.5
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.6e-175 619.0 400 73.2
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-175 618.6 400 72.5
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 4.8e-174 614.8 405 71.4
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.1e-173 612.1 400 72.8
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.0e-172 609.4 396 72.2
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.6e-172 609.0 400 72.2
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 3.5e-172 608.6 396 72.2
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 4.5e-172 608.2 396 72.2
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 4.5e-172 608.2 396 71.0
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 5.9e-172 607.8 396 72.0
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 5.9e-172 607.8 396 72.0
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 5.9e-172 607.8 399 70.4
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.0e-171 607.1 400 71.2
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.8e-171 605.1 399 69.9
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 6.5e-171 604.4 401 69.8
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 4.2e-170 601.7 397 71.3
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 7.2e-170 600.9 396 71.2
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 9.4e-170 600.5 404 70.0
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 3.6e-169 598.6 407 71.0
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 8.0e-169 597.4 399 69.4
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 3.0e-168 595.5 395 70.9
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 4.0e-168 595.1 399 69.9
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 6.7e-168 594.3 395 69.9
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.6e-167 592.4 395 69.6
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 4.4e-167 591.7 403 68.7
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.4e-167 591.7 399 69.7
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 1.3e-166 590.1 396 69.2
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 2.8e-166 589.0 393 69.2
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 2.8e-166 589.0 399 68.4
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.4e-165 586.6 383 71.3
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.1e-165 585.1 401 69.1
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.6e-164 583.2 398 70.1
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.7e-164 582.4 394 70.1
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 3.5e-164 582.0 395 68.6
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 2.2e-163 579.3 401 67.1
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.1e-162 577.0 401 67.6
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.5e-162 576.6 399 67.2
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.5e-162 575.9 391 67.8
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 2.1e-161 572.8 399 67.9
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.0e-160 570.5 399 67.9
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 6.8e-160 567.8 389 66.8
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 2.0e-159 566.2 408 65.7
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 2.6e-159 565.8 399 66.9
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 7.5e-159 564.3 399 64.7
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 2.8e-158 562.4 399 65.4
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.8e-158 562.4 400 65.0
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 4.1e-157 558.5 397 64.7
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.6e-156 556.6 394 64.7
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 2.7e-156 555.8 395 67.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 2.7e-156 555.8 400 62.5
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.5e-156 555.1 394 64.5
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.0e-155 553.9 399 64.4
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.3e-155 553.5 394 63.5
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 1.7e-155 553.1 392 66.1
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 1.5e-154 550.1 384 66.4
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 1.9e-154 549.7 400 63.0
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.9e-154 549.7 400 63.8
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 9.5e-154 547.4 382 65.7
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 1.2e-153 547.0 400 63.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 1.6e-153 546.6 382 67.5
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 2.7e-153 545.8 400 64.2
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 3.6e-153 545.4 402 66.7
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 1.0e-152 543.9 399 64.2
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.8e-152 543.1 399 63.7
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 6.8e-152 541.2 399 62.9
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 6.8e-152 541.2 399 63.2
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.2e-150 536.2 397 63.2
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 6.3e-150 534.6 399 62.9
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 1.8e-149 533.1 401 63.1
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 5.4e-149 531.6 394 61.7
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 5.4e-149 531.6 410 60.5
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.0e-149 531.2 387 64.1
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.0e-149 531.2 387 64.1
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 2.7e-148 529.3 395 61.3
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 7.7e-148 527.7 385 63.4
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 1.0e-147 527.3 408 60.0
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 2.9e-147 525.8 394 61.2
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 2.9e-147 525.8 389 60.9
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 1.1e-146 523.9 385 61.8
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 1.9e-146 523.1 391 61.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 1.9e-146 523.1 393 60.6
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 4.3e-146 521.9 392 62.2
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 2.1e-145 519.6 406 59.6
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 2.1e-145 519.6 389 60.7
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 2.3e-144 516.2 393 59.8
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 3.0e-144 515.8 393 61.1
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 4.9e-142 508.4 389 59.4
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 2.0e-140 503.1 385 60.5
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 4.6e-140 501.9 391 59.8
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 4.6e-140 501.9 391 60.1
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.9e-140 501.5 373 61.9
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 5.9e-140 501.5 373 61.9
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 7.8e-140 501.1 391 60.1
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 7.8e-140 501.1 408 58.6
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 8.0e-137 491.1 392 57.4
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 1.1e-133 480.7 392 58.2
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 8.6e-131 471.1 408 57.8
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 1.6e-129 466.8 385 55.8
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 2.7e-124 449.5 404 55.0
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 4.0e-120 435.6 388 52.3
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 6.4e-118 428.3 407 51.6
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.7e-115 420.2 407 51.1
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 2.3e-115 419.9 401 50.6
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.1e-114 417.5 401 51.6
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 1.6e-113 413.7 398 52.8
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 5.8e-111 405.2 399 50.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 4.3e-106 389.0 375 50.9
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 4.8e-105 385.6 404 48.3
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 4.5e-103 379.0 392 49.5
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 6.4e-102 375.2 409 46.2
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 5.1e-99 365.5 399 49.4
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 5.3e-96 355.5 400 45.5
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 9.0e-96 354.8 402 47.5
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.0e-91 341.3 379 46.7
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 8.1e-89 331.6 303 53.5
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 1.3e-83 314.3 399 44.6
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 3.9e-83 312.8 258 57.4
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 5.1e-83 312.4 399 44.1
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 3.4e-79 299.7 392 43.6
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 3.3e-74 283.1 227 60.8
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 3.7e-73 279.6 402 42.8
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 1.8e-72 277.3 389 39.8
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 3.1e-64 250.0 186 60.2
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 3.9e-59 233.0 157 64.3
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 3.5e-55 219.9 440 31.6
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 7.0e-40 169.1 153 54.9
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 3.6e-36 156.8 115 60.0
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 2.0e-31 141.0 371 26.4
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 5.9e-31 139.4 319 29.2
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.1e-28 131.0 115 60.0
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 2.9e-25 120.6 79 67.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.4e-19 101.7 410 26.6
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 4.0e-11 73.6 45 73.3
Psat0s2347g0040 Pisum sativum HOM05D004578 ORTHO05D005529 7.1e-08 62.8 58 50.0
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 9.2e-08 62.4 47 53.2
MCO09G374 Micromonas commoda HOM05D005694 ORTHO05D007402 2.7e-07 60.8 409 21.3
SMO351G0208 Selaginella moellendorffii HOM05D005694 ORTHO05D007402 6.6e-06 56.2 406 23.9
VMungo1041G0001 Vigna mungo HOM05D004578 ORTHO05D005529 8.6e-06 55.8 69 46.4


User provided reference genes

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