Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G264900 Populus trichocarpa HOM05D008192 ORTHO05D010301 5.0e-56 221.1 130 100.0
Sabra06G0207000 Salix brachista HOM05D008192 ORTHO05D010301 1.9e-47 192.6 127 81.1
Manes.16G130300 Manihot esculenta HOM05D008192 ORTHO05D010301 1.5e-15 86.7 77 62.3
Duzib168G0610 Durio zibethinus HOM05D008192 ORTHO05D010301 5.6e-15 84.7 93 52.7
QL02p018787 Quercus lobata HOM05D008192 ORTHO05D010301 5.6e-15 84.7 73 61.6
COL.COLO4_18958 Corchorus olitorius HOM05D003327 ORTHO05D010301 9.6e-15 84.0 92 53.3
Cpa.g.sc148.20 Carica papaya HOM05D008192 ORTHO05D010301 2.1e-14 82.8 73 56.2
Duzib187G1399 Durio zibethinus HOM05D008192 ORTHO05D010301 2.8e-14 82.4 92 53.3
Hma1.2p1_0389F.1_g142520 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 3.6e-14 82.0 73 60.3
Ciclev10009717m.g Citrus clementina HOM05D008192 ORTHO05D010301 1.1e-13 80.5 76 61.8
Dinv13414 Davidia involucrata HOM05D008192 ORTHO05D010301 1.1e-13 80.5 73 54.8
Gohir.A06G102100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.1e-13 80.5 91 51.6
Gorai.010G119200 Gossypium raimondii HOM05D008192 ORTHO05D010301 1.1e-13 80.5 91 51.6
Prupe.1G394700 Prunus persica HOM05D008192 ORTHO05D010301 1.4e-13 80.1 84 50.0
Haze_21404 Corylus avellana HOM05D008192 ORTHO05D010301 2.4e-13 79.3 77 55.8
Hma1.2p1_1685F.1_g297470 Hydrangea macrophylla HOM05D008192 ORTHO05D010301 2.4e-13 79.3 73 58.9
Dinv08187 Davidia involucrata HOM05D008192 ORTHO05D010301 3.1e-13 79.0 76 53.9
CANSAT25G1276 Cannabis sativa HOM05D008192 ORTHO05D010301 4.0e-13 78.6 80 52.5
Gohir.D06G104100 Gossypium hirsutum HOM05D008192 ORTHO05D010301 5.3e-13 78.2 91 50.5
Thecc.09G015000 Theobroma cacao HOM05D008192 ORTHO05D010301 5.3e-13 78.2 93 51.6
Cfa013043 Carpinus fangiana HOM05D008192 ORTHO05D010301 1.2e-12 77.0 77 54.5
MSTRG.11783 Avicennia marina HOM05D008192 ORTHO05D010301 3.4e-12 75.5 81 48.1
CSS0005628 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.4e-12 75.5 76 52.6
CSS0017566 Camellia sinensis var. sinensis HOM05D008192 ORTHO05D010301 3.4e-12 75.5 76 52.6
Manes.03G008000 Manihot esculenta HOM05D008192 ORTHO05D010301 4.4e-12 75.1 68 57.4
Actinidia22286 Actinidia chinensis HOM05D008192 ORTHO05D010301 5.8e-12 74.7 90 46.7
MD15G1041800 Malus domestica HOM05D008192 ORTHO05D010301 5.8e-12 74.7 73 53.4
SalBow4G3126 Salvia bowleyana HOM05D008192 ORTHO05D010301 5.8e-12 74.7 75 50.7
Atru.chr7.2557 Acer truncatum HOM05D008192 ORTHO05D010301 9.9e-12 73.9 68 61.8
Actinidia10524 Actinidia chinensis HOM05D008192 ORTHO05D010301 3.8e-11 72.0 73 52.1
Sed0007247 Sechium edule HOM05D008192 ORTHO05D010301 3.8e-11 72.0 77 49.4
arahy.Tifrunner.gnm1.ann1.D8U9UB Arachis hypogaea HOM05D008192 ORTHO05D010301 6.4e-11 71.2 92 46.7
TAR383G0583 Trochodendron aralioides HOM05D003759 ORTHO05D004149 8.4e-11 70.9 73 50.7
CiPaw.07G230700 Carya illinoinensis HOM05D008192 ORTHO05D010301 1.1e-10 70.5 83 45.8
AUR62032421 Chenopodium quinoa HOM05D008192 ORTHO05D010301 1.9e-10 69.7 62 58.1
GSVIVG01035976001 Vitis vinifera HOM05D008192 ORTHO05D010301 3.2e-10 68.9 73 53.4
Oeu021912.1 Olea europaea HOM05D008192 ORTHO05D010301 4.2e-10 68.6 74 48.6
Oeu032512.1 Olea europaea HOM05D008192 ORTHO05D010301 4.2e-10 68.6 81 44.4
AUR62024800 Chenopodium quinoa HOM05D008192 ORTHO05D010301 5.4e-10 68.2 62 56.5
Hund25618 Selenicereus undatus HOM05D008192 ORTHO05D010301 5.4e-10 68.2 85 44.7
Gohir.A05G060200 Gossypium hirsutum HOM05D008192 ORTHO05D010301 1.6e-09 66.6 74 52.7
Gorai.009G063500 Gossypium raimondii HOM05D008192 ORTHO05D010301 1.6e-09 66.6 74 52.7
Gohir.D05G062401 Gossypium hirsutum HOM05D008192 ORTHO05D010301 2.7e-09 65.9 74 52.7
FvH4_2g41181 Fragaria vesca HOM05D008192 ORTHO05D010301 6.0e-09 64.7 85 44.7
Glyma.17G223700 Glycine max HOM05D008192 ORTHO05D010301 6.0e-09 64.7 65 52.3
Lalb_Chr24g0401951 Lupinus albus HOM05D008192 ORTHO05D010301 6.0e-09 64.7 64 51.6
Ah.10g025590 Amaranthus hybridus HOM05D008192 ORTHO05D010301 1.0e-08 63.9 81 46.9
Migut.A00360 Erythranthe guttata HOM05D008192 ORTHO05D010301 1.0e-08 63.9 80 45.0
FAN20G1545 Fragaria x ananassa HOM05D008192 ORTHO05D010301 1.0e-08 63.9 78 46.2
Sc09g0010700 Simmondsia chinensis HOM05D008192 ORTHO05D010301 1.0e-08 63.9 70 50.0
TAR625G0365 Trochodendron aralioides HOM05D003759 ORTHO05D004149 1.0e-08 63.9 75 48.0
EL10Ac2g02493 Beta vulgaris HOM05D008192 ORTHO05D010301 1.7e-08 63.2 74 45.9
SGA_v2.0_scaffold147G36345 Striga asiatica HOM05D008192 ORTHO05D010301 1.7e-08 63.2 86 46.5
arahy.Tifrunner.gnm1.ann1.XVGB1U Arachis hypogaea HOM05D008192 ORTHO05D010301 2.3e-08 62.8 110 40.9
RcHm_v2.0_Chr6g0299341 Rosa chinensis HOM05D008192 ORTHO05D010301 3.0e-08 62.4 85 43.5
MD08G1055700 Malus domestica HOM05D008192 ORTHO05D010301 5.1e-08 61.6 75 44.0
Nitab4.5_0000264g0200 Nicotiana tabacum HOM05D008192 ORTHO05D010301 6.6e-08 61.2 76 43.4
DCAR_022864 Daucus carota HOM05D008192 ORTHO05D010301 8.7e-08 60.8 73 49.3
FAN15G3555 Fragaria x ananassa HOM05D002088 ORTHO05D002204 8.7e-08 60.8 91 40.7
FAN27G3331 Fragaria x ananassa HOM05D002088 ORTHO05D002204 8.7e-08 60.8 85 41.2
MBI15_g18234_MAGBIO Magnolia biondii HOM05D003759 ORTHO05D004149 1.1e-07 60.5 71 49.3
Cc04_g10610 Coffea canephora HOM05D008192 ORTHO05D010301 1.5e-07 60.1 73 47.9
Duzib150G1248 Durio zibethinus HOM05D008192 ORTHO05D010301 2.5e-07 59.3 92 42.4
Peaxi162Scf01286g00122 Petunia axillaris HOM05D008192 ORTHO05D010301 4.3e-07 58.5 79 39.2
PSO384G1085 Papaver somniferum HOM05D003759 ORTHO05D004149 7.3e-07 57.8 83 45.8
Solyc08g006760.4 Solanum lycopersicum HOM05D008192 ORTHO05D010301 1.6e-06 56.6 75 45.3
Sopen08g002700 Solanum pennellii HOM05D008192 ORTHO05D010301 1.6e-06 56.6 75 45.3
PGSC0003DMG400026278 Solanum tuberosum HOM05D008192 ORTHO05D010301 1.6e-06 56.6 77 41.6
Peaxi162Scf00045g02027 Petunia axillaris HOM05D008192 ORTHO05D010301 2.1e-06 56.2 75 42.7
Cc06_g14820 Coffea canephora HOM05D003759 ORTHO05D004149 2.8e-06 55.8 68 44.1
Dinv41366 Davidia involucrata HOM05D003759 ORTHO05D004149 2.8e-06 55.8 79 44.3
HanXRQChr12g0357671 Helianthus annuus HOM05D003759 ORTHO05D004149 2.8e-06 55.8 84 38.1
Manes.06G035500 Manihot esculenta HOM05D003759 ORTHO05D004149 2.8e-06 55.8 64 50.0
PSO339G1361 Papaver somniferum HOM05D003759 ORTHO05D004149 2.8e-06 55.8 83 45.8
GSVIVG01023625001 Vitis vinifera HOM05D003759 ORTHO05D004149 2.8e-06 55.8 91 41.8
CAN.G1198.1 Capsicum annuum HOM05D008192 ORTHO05D010301 4.8e-06 55.1 66 47.0
CDE02G3703 Ceratophyllum demersum HOM05D003759 ORTHO05D004149 4.8e-06 55.1 70 42.9
Haze_19170 Corylus avellana HOM05D003759 ORTHO05D004149 4.8e-06 55.1 57 49.1
Dinv42845 Davidia involucrata HOM05D003759 ORTHO05D004149 6.2e-06 54.7 79 44.3
Dinv43255 Davidia involucrata HOM05D003759 ORTHO05D004149 6.2e-06 54.7 79 44.3
ECA234G4063 Erigeron canadensis HOM05D003759 ORTHO05D004149 8.1e-06 54.3 79 43.0
Lsat_1_v5_gn_7_50020 Lactuca sativa HOM05D003759 ORTHO05D004149 8.1e-06 54.3 81 39.5


User provided reference genes

Program Settings