Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G263400 Populus trichocarpa HOM05D004632 ORTHO05D005556 2.3e-269 932.2 676 100.0
Sabra06G0205900 Salix brachista HOM05D004632 ORTHO05D005556 3.6e-254 881.7 676 96.6
Potri.018G020200 Populus trichocarpa HOM05D004632 ORTHO05D005556 3.0e-245 852.0 676 93.9
Manes.16G128700 Manihot esculenta HOM05D004632 ORTHO05D005556 5.7e-220 768.1 673 87.2
Dinv34967 Davidia involucrata HOM05D004632 ORTHO05D005556 1.9e-202 709.9 674 82.3
TWI32G0830 Tripterygium wilfordii HOM05D004632 ORTHO05D005556 1.1e-199 700.7 675 81.9
CSS0008139 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 4.7e-198 695.3 674 81.8
GSVIVG01035887001 Vitis vinifera HOM05D004632 ORTHO05D005556 1.1e-197 694.1 675 82.2
Ciclev10007613m.g Citrus clementina HOM05D004632 ORTHO05D005556 1.4e-197 693.7 676 82.5
MELO3C016968.2 Cucumis melo HOM05D004632 ORTHO05D005556 3.4e-196 689.1 674 80.6
CsaV3_4G036640 Cucumis sativus L. HOM05D004632 ORTHO05D005556 3.4e-196 689.1 674 80.4
Prupe.1G392800 Prunus persica HOM05D004632 ORTHO05D005556 5.8e-196 688.3 676 81.8
Duzib168G2284 Durio zibethinus HOM05D004632 ORTHO05D005556 1.1e-194 684.1 673 81.4
Atru.chr7.2537 Acer truncatum HOM05D004632 ORTHO05D005556 1.2e-193 680.6 679 80.6
Sed0004025 Sechium edule HOM05D004632 ORTHO05D005556 1.3e-192 677.2 674 80.3
RcHm_v2.0_Chr6g0299541 Rosa chinensis HOM05D004632 ORTHO05D005556 5.6e-191 671.8 674 80.9
VMungo1309G0882 Vigna mungo HOM05D004632 ORTHO05D005556 1.2e-190 670.6 674 79.2
Rhsim02G0214000 Rhododendron simsii HOM05D004632 ORTHO05D005556 1.6e-190 670.2 674 79.5
Phvul.009G087600 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 2.1e-190 669.8 675 79.1
CiPaw.07G229300 Carya illinoinensis HOM05D004632 ORTHO05D005556 1.8e-189 666.8 678 80.1
Lalb_Chr23g0268241 Lupinus albus HOM05D004632 ORTHO05D005556 1.8e-189 666.8 674 79.2
TPR.G1835 Trifolium pratense HOM05D004632 ORTHO05D005556 5.2e-189 665.2 674 79.1
Cc09_g08590 Coffea canephora HOM05D004632 ORTHO05D005556 1.2e-188 664.1 675 79.0
Glyma.06G062300 Glycine max HOM05D004632 ORTHO05D005556 1.2e-188 664.1 674 78.9
Medtr3g106080 Medicago truncatula HOM05D004632 ORTHO05D005556 1.2e-188 664.1 674 78.9
Nn8g39852 Nelumbo nucifera HOM05D004632 ORTHO05D005556 1.2e-188 664.1 673 78.9
Psat5g032640 Pisum sativum HOM05D004632 ORTHO05D005556 4.4e-188 662.1 674 78.6
FvH4_2g41020 Fragaria vesca HOM05D004632 ORTHO05D005556 5.8e-188 661.8 674 79.8
Lj1g0022186 Lotus japonicus HOM05D004632 ORTHO05D005556 9.9e-188 661.0 674 79.4
ClCG05G016370 Citrullus lanatus HOM05D004632 ORTHO05D005556 2.2e-187 659.8 681 79.0
FAN20G0152 Fragaria x ananassa HOM05D004632 ORTHO05D005556 3.7e-187 659.1 688 77.8
Cpa.g.sc127.22 Carica papaya HOM05D004632 ORTHO05D005556 1.1e-186 657.5 462 72.3
FAN20G1191 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.9e-186 656.8 689 77.8
Ca_15774_v3 Cicer arietinum L. HOM05D004632 ORTHO05D005556 2.4e-186 656.4 674 78.2
Glyma.04G061600 Glycine max HOM05D004632 ORTHO05D005556 7.1e-186 654.8 675 78.4
MD00G1143300 Malus domestica HOM05D004632 ORTHO05D005556 7.1e-186 654.8 465 74.6
Actinidia22297 Actinidia chinensis HOM05D004632 ORTHO05D005556 4.6e-185 652.1 673 79.3
FAN27G1200 Fragaria x ananassa HOM05D004632 ORTHO05D005556 1.3e-184 650.6 462 73.2
CAN.G199.61 Capsicum annuum HOM05D004632 ORTHO05D005556 5.6e-183 645.2 674 77.7
Peaxi162Scf00430g00519 Petunia axillaris HOM05D004632 ORTHO05D005556 9.6e-183 644.4 676 78.4
PSO782G2171 Papaver somniferum HOM05D004632 ORTHO05D005556 2.1e-182 643.3 673 78.0
EL10Ac1g00704 Beta vulgaris HOM05D004632 ORTHO05D005556 1.4e-181 640.6 467 72.4
Gohir.A05G058900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 3.1e-181 639.4 459 72.8
PSO063G4867 Papaver somniferum HOM05D004632 ORTHO05D005556 3.1e-181 639.4 674 77.7
PGR042G1415 Punica granatum HOM05D004632 ORTHO05D005556 5.2e-181 638.6 676 78.4
HanXRQChr03g0084861 Helianthus annuus HOM05D004632 ORTHO05D005556 8.9e-181 637.9 671 77.5
arahy.Tifrunner.gnm1.ann1.21LKMJ Arachis hypogaea HOM05D004632 ORTHO05D005556 1.2e-180 637.5 462 70.8
arahy.Tifrunner.gnm1.ann1.8PBG0P Arachis hypogaea HOM05D004632 ORTHO05D005556 3.4e-180 636.0 674 77.6
DCAR_015265 Daucus carota HOM05D004632 ORTHO05D005556 5.8e-180 635.2 468 72.2
Aqoxy7G03810 Aquilegia oxysepala HOM05D004632 ORTHO05D005556 2.9e-179 632.9 676 78.0
MSTRG.9370 Avicennia marina HOM05D004632 ORTHO05D005556 3.2e-178 629.4 676 77.2
Sopen06g024220 Solanum pennellii HOM05D004632 ORTHO05D005556 3.2e-178 629.4 677 76.7
MBI15_g05236_MAGBIO Magnolia biondii HOM05D004632 ORTHO05D005556 5.4e-178 628.6 462 71.4
Solyc06g065700.3 Solanum lycopersicum HOM05D004632 ORTHO05D005556 5.4e-178 628.6 677 76.4
Migut.N00603 Erythranthe guttata HOM05D004632 ORTHO05D005556 3.0e-176 622.9 673 77.0
Gorai.001G037500 Gossypium raimondii HOM05D004632 ORTHO05D005556 3.0e-176 622.9 670 78.4
Lj7A732T26 Lonicera japonica HOM05D004632 ORTHO05D005556 3.0e-176 622.9 661 74.1
THA.LOC104814991 Tarenaya hassleriana HOM05D004632 ORTHO05D005556 3.0e-176 622.9 679 77.0
BcaB04g19812 Brassica carinata HOM05D004632 ORTHO05D005556 1.9e-175 620.2 673 76.1
Gohir.A07G031900 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.5e-175 619.8 671 77.8
ECA240G3507 Erigeron canadensis HOM05D004632 ORTHO05D005556 3.3e-175 619.4 669 77.1
Lsat_1_v5_gn_6_77900 Lactuca sativa HOM05D004632 ORTHO05D005556 1.3e-174 617.5 676 76.9
Gohir.D07G035600 Gossypium hirsutum HOM05D004632 ORTHO05D005556 4.8e-174 615.5 671 77.5
Ah.05g177560 Amaranthus hybridus HOM05D004632 ORTHO05D005556 1.1e-173 614.4 474 69.4
Eucgr.C02661 Eucalyptus grandis HOM05D004632 ORTHO05D005556 1.8e-173 613.6 689 75.3
A09p06280 Brassica napus HOM05D004632 ORTHO05D005556 5.3e-173 612.1 673 76.1
BraA09t36273Z Brassica rapa HOM05D004632 ORTHO05D005556 1.5e-172 610.5 673 75.9
BolC9t53613H Brassica oleracea HOM05D004632 ORTHO05D005556 2.0e-172 610.1 673 75.8
Lsat_1_v5_gn_7_4261 Lactuca sativa HOM05D004632 ORTHO05D005556 2.2e-171 606.7 462 69.0
SGA_v2.0_scaffold40G15680 Striga asiatica HOM05D004632 ORTHO05D005556 6.4e-171 605.1 713 73.8
ATR0739G094 Amborella trichopoda HOM05D004632 ORTHO05D005556 1.4e-170 604.0 673 75.0
C09p06950 Brassica napus HOM05D004632 ORTHO05D005556 2.1e-169 600.1 673 75.3
Thecc.09G016800 Theobroma cacao HOM05D004632 ORTHO05D005556 2.1e-169 600.1 573 87.1
BcaC04g23574 Brassica carinata HOM05D004632 ORTHO05D005556 2.7e-169 599.7 673 75.3
AT5G25150 Arabidopsis thaliana HOM05D004632 ORTHO05D005556 4.3e-167 592.4 673 75.5
Carub.0006s2297 Capsella rubella HOM05D004632 ORTHO05D005556 1.4e-165 587.4 673 75.0
Sp2g22380 Schrenkiella parvula HOM05D004632 ORTHO05D005556 5.3e-165 585.5 673 74.7
BolC2t12041H Brassica oleracea HOM05D004632 ORTHO05D005556 9.9e-164 581.3 674 74.0
CSS0046974 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 1.3e-163 580.9 622 77.7
Thhalv10003767m.g Eutrema salsugineum HOM05D004632 ORTHO05D005556 1.1e-162 577.8 674 74.6
Aa31LG11G4400 Aethionema arabicum HOM05D004632 ORTHO05D005556 3.2e-162 576.2 463 65.2
HPP92_014401 Vanilla planifolia HOM05D004632 ORTHO05D005556 2.7e-161 573.2 674 72.8
Glyma.17G222200 Glycine max HOM05D004632 ORTHO05D005556 1.1e-159 567.8 462 65.4
Phvul.001G042300 Phaseolus vulgaris HOM05D004632 ORTHO05D005556 1.1e-159 567.8 462 64.1
CARHR188340 Cardamine hirsuta HOM05D004632 ORTHO05D005556 2.5e-159 566.6 457 65.2
C02p59830 Brassica napus HOM05D004632 ORTHO05D005556 4.3e-159 565.8 674 73.1
VMungo0647G2075 Vigna mungo HOM05D004632 ORTHO05D005556 1.1e-157 561.2 461 64.9
MSTRG.4644 Avicennia marina HOM05D004632 ORTHO05D005556 1.4e-157 560.8 463 65.4
Os06g0649500 Oryza sativa ssp. japonica HOM05D004632 ORTHO05D005556 4.0e-157 559.3 463 62.9
vmacro11252 Vaccinium macrocarpon HOM05D004632 ORTHO05D005556 4.0e-157 559.3 359 78.3
BraA02t08956Z Brassica rapa HOM05D004632 ORTHO05D005556 4.5e-156 555.8 674 72.4
AUR62013801 Chenopodium quinoa HOM05D004632 ORTHO05D005556 1.3e-155 554.3 400 71.5
A02p39940 Brassica napus HOM05D004632 ORTHO05D005556 2.9e-155 553.1 674 72.4
CDE05G3472 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.9e-154 550.4 673 61.5
Nitab4.5_0007182g0050 Nicotiana tabacum HOM05D004632 ORTHO05D005556 2.5e-154 550.1 463 64.6
AUR62023356 Chenopodium quinoa HOM05D004632 ORTHO05D005556 2.1e-153 547.0 463 64.4
Haze_21427 Corylus avellana HOM05D004632 ORTHO05D005556 5.1e-152 542.3 463 65.4
AL6G36810 Arabidopsis lyrata HOM05D004632 ORTHO05D005556 8.7e-152 541.6 444 65.8
TAR626G1191 Trochodendron aralioides HOM05D004632 ORTHO05D005556 8.7e-152 541.6 577 82.0
Hund27424 Selenicereus undatus HOM05D004632 ORTHO05D005556 1.5e-151 540.8 583 54.7
BcaB07g29936 Brassica carinata HOM05D004632 ORTHO05D005556 1.2e-148 531.2 461 61.2
Nitab4.5_0003976g0020 Nicotiana tabacum HOM05D004632 ORTHO05D005556 1.3e-147 527.7 730 64.9
SalBow1G2567 Salvia bowleyana HOM05D004632 ORTHO05D005556 5.7e-143 512.3 389 70.4
Zm00001eb388650 Zea mays HOM05D004632 ORTHO05D005556 3.2e-138 496.5 571 76.9
BcaC03g17924 Brassica carinata HOM05D004632 ORTHO05D005556 1.4e-130 471.1 674 68.1
Gohir.D05G060932 Gossypium hirsutum HOM05D004632 ORTHO05D005556 2.6e-127 460.3 419 59.7
Oeu061252.3 Olea europaea HOM05D004632 ORTHO05D005556 1.5e-122 444.5 710 63.9
TAR625G0176 Trochodendron aralioides HOM05D004632 ORTHO05D005556 7.5e-119 432.2 356 66.0
Mapoly0009s0169 Marchantia polymorpha HOM05D004632 ORTHO05D005556 1.6e-116 424.5 470 49.1
MD15G1039100 Malus domestica HOM05D004632 ORTHO05D005556 6.8e-112 409.1 321 69.5
Pp3c12_23330 Physcomitrium patens HOM05D004632 ORTHO05D005556 8.8e-112 408.7 466 49.8
Oeu013659.1 Olea europaea HOM05D004632 ORTHO05D005556 2.2e-110 404.1 279 73.5
CSS0042581 Camellia sinensis var. sinensis HOM05D004632 ORTHO05D005556 5.4e-109 399.4 293 73.7
SMO118G0104 Selaginella moellendorffii HOM05D004632 ORTHO05D005556 4.4e-103 379.8 401 51.6
Actinidia13189 Actinidia chinensis HOM05D004632 ORTHO05D005556 2.6e-79 300.8 673 57.8
COL.COLO4_18941 Corchorus olitorius HOM05D004632 ORTHO05D005556 6.2e-73 279.6 393 48.3
Zm00001eb259920 Zea mays HOM05D004632 ORTHO05D005556 2.3e-67 261.2 194 69.6
PRCOL_00000651 Prasinoderma coloniale HOM05D004632 ORTHO05D005556 2.1e-60 238.0 468 35.7
Manes.03G009801 Manihot esculenta HOM05D004632 ORTHO05D005556 2.7e-60 237.7 403 45.7
Sed0017212 Sechium edule HOM05D004632 ORTHO05D005556 2.5e-58 231.1 577 48.0
MD15G1039000 Malus domestica HOM05D004632 ORTHO05D005556 1.8e-56 224.9 142 81.0
Dinv40981 Davidia involucrata HOM05D004632 ORTHO05D005556 3.4e-55 220.7 279 51.3
VMungo1309G1582 Vigna mungo HOM05D004632 ORTHO05D005556 2.2e-54 218.0 146 74.7
MCO11G306 Micromonas commoda HOM05D004632 ORTHO05D005556 9.0e-48 196.1 489 30.5
SEGI_13945 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.5e-47 195.3 170 57.6
CDE05G1210 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 2.6e-47 194.5 143 67.8
CBR_g41144 Chara braunii HOM05D004632 ORTHO05D005556 9.9e-47 192.6 195 48.2
MCO11G293 Micromonas commoda HOM05D004632 ORTHO05D005556 2.7e-44 184.5 542 28.2
CDE05G3588 Ceratophyllum demersum HOM05D004632 ORTHO05D005556 1.8e-43 181.8 124 70.2
SEGI_28232 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 3.3e-42 177.6 160 61.2
Actinidia10511 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.2e-36 159.1 143 60.8
CBR_g39739 Chara braunii HOM05D004632 ORTHO05D005556 2.1e-36 158.3 290 37.6
AagrBONN_evm.TU.Sc2ySwM_228.3176 Anthoceros agrestis HOM05D003428 ORTHO05D004131 3.0e-35 154.5 147 53.1
Hma1.2p1_0059F.1_g032640 Hydrangea macrophylla HOM05D004632 ORTHO05D005556 5.1e-35 153.7 294 90.1
PSO541G0014 Papaver somniferum HOM05D004632 ORTHO05D005556 8.7e-35 152.9 116 68.1
Sabra18G0022500 Salix brachista HOM05D004632 ORTHO05D005556 9.6e-34 149.4 281 43.1
Actinidia09762 Actinidia chinensis HOM05D004632 ORTHO05D005556 5.1e-19 100.5 66 71.2
Cre12.g526950 Chlamydomonas reinhardtii HOM05D004632 ORTHO05D005556 7.4e-18 96.7 514 24.1
SEGI_29407 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 8.2e-17 93.2 69 62.3
SEGI_30848 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 5.9e-15 87.0 75 53.3
Glyma.14G103500 Glycine max HOM05D004632 ORTHO05D005556 2.9e-14 84.7 114 46.5
Actinidia10512 Actinidia chinensis HOM05D004632 ORTHO05D005556 9.4e-13 79.7 88 52.3
MD15G1038900 Malus domestica HOM05D004632 ORTHO05D005556 8.8e-11 73.2 54 70.4
Haze_26425 Corylus avellana HOM05D004632 ORTHO05D005556 2.6e-10 71.6 181 30.4
FAN15G3250 Fragaria x ananassa HOM05D004632 ORTHO05D005556 2.8e-09 68.2 46 76.1
Cfa022837 Carpinus fangiana HOM05D004632 ORTHO05D005556 2.4e-08 65.1 509 23.4
Dinv40325 Davidia involucrata HOM05D004632 ORTHO05D005556 3.5e-07 61.2 37 78.4
Actinidia36729 Actinidia chinensis HOM05D004632 ORTHO05D005556 1.3e-06 59.3 137 32.1
Glyma.14G103600 Glycine max HOM05D004632 ORTHO05D005556 1.3e-06 59.3 52 63.5
SEGI_21073 Sequoiadendron giganteum HOM05D004632 ORTHO05D005556 1.3e-06 59.3 54 61.1


User provided reference genes

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