Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 1.9e-308 1061.6 520 100.0
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 4.0e-290 1000.7 520 93.1
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 9.3e-287 989.6 525 92.0
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.1e-284 982.6 521 92.3
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 1.1e-284 982.6 521 91.9
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 4.3e-284 980.7 521 92.1
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 3.7e-283 977.6 521 91.9
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 3.7e-283 977.6 521 91.4
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.7e-283 977.6 529 90.2
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 6.2e-283 976.9 521 91.2
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.1e-282 976.1 532 88.7
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 6.9e-282 973.4 523 90.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.5e-281 972.2 521 91.0
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.0e-281 971.8 526 89.9
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 5.8e-281 970.3 522 90.4
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 1.7e-280 968.8 521 90.2
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 1.7e-280 968.8 521 90.8
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 4.9e-280 967.2 525 89.5
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 6.5e-280 966.8 520 90.6
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 8.4e-280 966.5 520 90.4
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 8.4e-280 966.5 520 90.2
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 1.4e-279 965.7 531 88.7
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 2.5e-279 964.9 518 90.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.1e-279 963.4 520 90.0
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 9.3e-279 963.0 518 90.3
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 9.3e-279 963.0 520 89.8
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 1.2e-278 962.6 522 89.3
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-277 959.1 524 89.7
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 1.3e-277 959.1 524 89.7
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.8e-277 958.7 518 90.0
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 2.3e-277 958.4 531 88.1
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 3.9e-277 957.6 526 88.8
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 5.1e-277 957.2 521 89.1
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 6.7e-277 956.8 509 91.2
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 1.1e-276 956.1 525 88.6
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 1.5e-276 955.7 528 88.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 5.7e-276 953.7 528 88.1
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 7.4e-276 953.4 565 83.9
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 1.3e-275 952.6 527 87.9
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 2.2e-275 951.8 528 88.3
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 2.8e-275 951.4 524 88.2
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 2.8e-275 951.4 531 87.8
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 3.7e-275 951.0 525 87.8
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 4.8e-275 950.7 518 89.4
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 6.3e-275 950.3 518 89.2
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 8.2e-275 949.9 528 87.9
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 8.2e-275 949.9 524 88.0
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 1.1e-274 949.5 526 87.8
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 1.4e-274 949.1 528 87.9
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 6.9e-274 946.8 519 87.9
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 3.4e-273 944.5 524 87.4
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 3.4e-273 944.5 524 87.4
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.4e-273 944.5 554 84.5
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 1.0e-272 943.0 523 87.6
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 1.3e-272 942.6 524 87.4
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 520 87.9
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.3e-272 942.6 526 87.6
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 1.3e-272 942.6 520 87.3
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 1.7e-272 942.2 528 87.5
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.2e-272 941.8 527 86.9
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 2.2e-272 941.8 520 87.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 2.2e-272 941.8 520 87.3
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.9e-272 941.4 524 87.0
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 6.5e-272 940.3 519 87.7
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 6.5e-272 940.3 520 88.7
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 8.5e-272 939.9 499 91.6
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 8.5e-272 939.9 511 88.6
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 1.1e-271 939.5 520 88.7
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-271 939.5 524 87.0
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 1.1e-271 939.5 524 87.0
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.4e-271 939.1 520 88.8
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 1.4e-271 939.1 528 86.2
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 5.5e-271 937.2 520 86.9
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 7.2e-271 936.8 518 86.7
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 1.6e-270 935.6 521 86.8
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 1.6e-270 935.6 522 86.2
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 4.6e-270 934.1 523 87.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 1.8e-269 932.2 499 90.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.3e-269 931.8 520 86.2
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.0e-269 931.4 520 86.9
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 3.9e-269 931.0 523 86.6
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 2.0e-268 928.7 522 85.2
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 5.7e-268 927.2 527 84.6
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 7.4e-268 926.8 525 85.7
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.3e-267 926.0 546 83.2
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 8.2e-267 923.3 516 87.0
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.8e-266 922.2 523 86.0
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 3.1e-266 921.4 510 87.8
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 5.3e-266 920.6 523 85.9
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 6.9e-266 920.2 532 84.4
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 6.9e-266 920.2 525 86.3
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 9.1e-266 919.8 499 88.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.2e-265 919.5 526 84.2
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 1.2e-265 919.5 524 85.9
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 2.9e-264 914.8 524 85.1
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 5.0e-264 914.1 522 84.3
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.1e-263 912.9 521 86.4
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.1e-262 908.7 505 85.9
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 5.1e-261 904.0 531 83.4
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.7e-259 899.0 521 83.9
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 1.7e-259 899.0 521 83.9
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.8e-258 895.6 510 84.1
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.5e-257 892.5 513 81.7
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 2.0e-252 875.5 517 79.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.9e-248 861.7 520 80.6
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 3.8e-248 861.3 528 76.9
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 5.5e-247 857.4 521 81.2
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 1.5e-244 849.4 564 74.8
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 7.7e-241 837.0 528 75.4
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 6.1e-238 827.4 521 75.8
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.1e-234 816.6 521 75.2
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 9.1e-234 813.5 520 81.5
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 3.5e-233 811.6 473 86.0
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.5e-231 806.2 499 75.8
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 4.2e-231 804.7 506 73.7
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.7e-227 792.7 520 71.5
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.7e-227 791.6 519 72.1
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 1.6e-225 786.2 519 71.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.1e-223 780.0 524 76.7
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 7.3e-223 777.3 525 76.0
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 1.8e-221 772.7 520 69.6
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.2e-217 760.0 411 89.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 6.6e-216 754.2 518 70.1
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 5.4e-210 734.6 525 72.8
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 2.6e-204 715.7 508 65.9
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 3.9e-200 701.8 379 90.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 6.6e-192 674.5 539 60.1
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 1.3e-190 670.2 419 81.9
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 6.2e-190 667.9 499 65.5
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 9.9e-188 660.6 346 94.5
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 1.9e-183 646.4 343 91.8
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.7e-163 580.1 518 58.9
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.7e-161 572.8 354 81.1
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 2.1e-153 546.6 491 53.4
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 1.1e-149 534.3 292 87.0
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 6.9e-149 531.6 290 86.9
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 2.3e-144 516.5 275 93.1
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 1.3e-142 510.8 356 74.4
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.2e-137 494.2 510 50.2
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 1.3e-131 474.2 502 49.6
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 1.3e-126 457.6 284 81.7
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 9.5e-98 361.7 193 87.6
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 4.6e-84 316.2 409 41.3
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 5.3e-64 249.6 325 45.5
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.5e-63 248.1 413 40.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.4e-48 198.4 120 77.5
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 4.8e-41 173.3 93 88.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 9.1e-32 142.5 79 84.8
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 8.5e-30 136.0 93 68.8
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 7.0e-24 116.3 68 76.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 1.6e-20 105.1 76 65.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 9.1e-16 89.4 72 63.9
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 1.5e-13 82.0 125 42.4
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 2.3e-11 74.7 47 68.1
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.1e-08 64.3 34 82.4


User provided reference genes

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