Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G142300 Populus trichocarpa HOM05D004715 ORTHO05D005644 3.8e-111 404.8 202 100.0
Manes.11G053500 Manihot esculenta HOM05D004715 ORTHO05D005644 6.1e-101 370.9 202 89.1
Sabra06G0111400 Salix brachista HOM05D004715 ORTHO05D005644 1.1e-97 360.1 267 71.9
AL2G41320 Arabidopsis lyrata HOM05D004715 ORTHO05D005644 5.7e-83 311.2 202 71.8
AT1G80190 Arabidopsis thaliana HOM05D004715 ORTHO05D005644 7.5e-83 310.8 202 71.8
Thhalv10019155m.g Eutrema salsugineum HOM05D004715 ORTHO05D005644 1.7e-82 309.7 202 71.8
Cpa.g.sc10.228 Carica papaya HOM05D004715 ORTHO05D005644 6.3e-82 307.8 202 72.8
CARHR074290 Cardamine hirsuta HOM05D004715 ORTHO05D005644 1.4e-81 306.6 202 69.3
Ciclev10026407m.g Citrus clementina HOM05D004715 ORTHO05D005644 3.1e-81 305.4 202 72.3
Aa31LG1G19480 Aethionema arabicum HOM05D004715 ORTHO05D005644 7.0e-81 304.3 202 68.8
Carub.0002s2733 Capsella rubella HOM05D004715 ORTHO05D005644 9.1e-81 303.9 200 70.0
Carub.0005s0104 Capsella rubella HOM05D004715 ORTHO05D005644 9.1e-81 303.9 200 70.0
THA.LOC104812498 Tarenaya hassleriana HOM05D004715 ORTHO05D005644 2.0e-80 302.8 202 69.8
BcaB05g25289 Brassica carinata HOM05D004715 ORTHO05D005644 1.0e-79 300.4 202 68.3
Gohir.D10G075500 Gossypium hirsutum HOM05D004715 ORTHO05D005644 6.6e-79 297.7 202 69.8
Gorai.011G081500 Gossypium raimondii HOM05D004715 ORTHO05D005644 6.6e-79 297.7 202 69.8
TWI18G0840 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 8.6e-79 297.4 202 71.8
Aa31LG4G470 Aethionema arabicum HOM05D004715 ORTHO05D005644 4.2e-78 295.0 193 69.9
C02p37490 Brassica napus HOM05D004715 ORTHO05D005644 9.5e-78 293.9 202 67.8
BcaB02g07291 Brassica carinata HOM05D004715 ORTHO05D005644 2.8e-77 292.4 200 65.5
BcaC03g15994 Brassica carinata HOM05D004715 ORTHO05D005644 2.8e-77 292.4 202 67.3
CiPaw.01G245000 Carya illinoinensis HOM05D004715 ORTHO05D005644 2.8e-77 292.4 202 69.8
Thecc.06G070800 Theobroma cacao HOM05D004715 ORTHO05D005644 2.8e-77 292.4 202 69.3
QL05p027948 Quercus lobata HOM05D004715 ORTHO05D005644 3.6e-77 292.0 200 70.5
Sp5g35610 Schrenkiella parvula HOM05D004715 ORTHO05D005644 4.7e-77 291.6 193 69.4
arahy.Tifrunner.gnm1.ann1.GHMT6A Arachis hypogaea HOM05D004715 ORTHO05D005644 1.4e-76 290.0 202 69.3
Ciclev10027256m.g Citrus clementina HOM05D004715 ORTHO05D005644 1.8e-76 289.7 193 71.0
arahy.Tifrunner.gnm1.ann1.EP2671 Arachis hypogaea HOM05D004715 ORTHO05D005644 2.3e-76 289.3 202 69.3
CsaV3_7G032580 Cucumis sativus L. HOM05D004715 ORTHO05D005644 2.3e-76 289.3 203 69.5
BolC2t09760H Brassica oleracea HOM05D004715 ORTHO05D005644 5.2e-76 288.1 193 67.9
A02p23740 Brassica napus HOM05D004715 ORTHO05D005644 8.9e-76 287.3 202 66.3
BraA02t07366Z Brassica rapa HOM05D004715 ORTHO05D005644 8.9e-76 287.3 202 66.3
Atru.chr1.3057 Acer truncatum HOM05D004715 ORTHO05D005644 2.0e-75 286.2 186 74.2
Lalb_Chr22g0350991 Lupinus albus HOM05D004715 ORTHO05D005644 4.4e-75 285.0 203 68.0
ClCG09G002750 Citrullus lanatus HOM05D004715 ORTHO05D005644 7.5e-75 284.3 203 68.5
Gorai.009G130400 Gossypium raimondii HOM05D004715 ORTHO05D005644 7.5e-75 284.3 199 67.8
Gohir.A05G125400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 1.7e-74 283.1 199 67.3
TWI12G0849 Tripterygium wilfordii HOM05D004715 ORTHO05D005644 2.2e-74 282.7 193 70.5
Phvul.005G004200 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 2.8e-74 282.3 203 67.0
Cfa001997 Carpinus fangiana HOM05D004715 ORTHO05D005644 3.7e-74 282.0 202 68.8
MELO3C023404.2 Cucumis melo HOM05D004715 ORTHO05D005644 6.3e-74 281.2 203 67.5
CANSAT56G4056 Cannabis sativa HOM05D004715 ORTHO05D005644 8.3e-74 280.8 203 66.0
Gohir.D05G126400 Gossypium hirsutum HOM05D004715 ORTHO05D005644 8.3e-74 280.8 199 66.8
Duzib160G0636 Durio zibethinus HOM05D004715 ORTHO05D005644 1.4e-73 280.0 193 68.4
Prupe.3G081400 Prunus persica HOM05D004715 ORTHO05D005644 1.4e-73 280.0 202 66.3
Medtr1g052500 Medicago truncatula HOM05D004715 ORTHO05D005644 1.8e-73 279.6 203 66.5
Ca_12943_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 2.4e-73 279.3 203 67.0
Duzib235G0750 Durio zibethinus HOM05D004715 ORTHO05D005644 2.4e-73 279.3 202 66.8
Phvul.005G019100 Phaseolus vulgaris HOM05D004715 ORTHO05D005644 5.4e-73 278.1 203 66.5
Medtr3g005080 Medicago truncatula HOM05D004715 ORTHO05D005644 9.2e-73 277.3 203 66.0
Lj3g0005798 Lotus japonicus HOM05D004715 ORTHO05D005644 1.2e-72 276.9 201 67.2
Sed0013432 Sechium edule HOM05D004715 ORTHO05D005644 4.5e-72 275.0 203 64.5
GSVIVG01017274001 Vitis vinifera HOM05D004715 ORTHO05D005644 1.0e-71 273.9 200 65.5
C06p28980 Brassica napus HOM05D004715 ORTHO05D005644 2.3e-71 272.7 194 63.9
RcHm_v2.0_Chr2g0136471 Rosa chinensis HOM05D004715 ORTHO05D005644 2.3e-71 272.7 200 65.5
TPR.G25532 Trifolium pratense HOM05D004715 ORTHO05D005644 5.0e-71 271.6 203 66.0
TAR369G0040 Trochodendron aralioides HOM05D004715 ORTHO05D005644 8.6e-71 270.8 202 63.4
FAN23G0015 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.5e-70 270.0 200 64.0
BcaC08g45296 Brassica carinata HOM05D004715 ORTHO05D005644 1.9e-70 269.6 193 63.2
Aqoxy1G00791 Aquilegia oxysepala HOM05D004715 ORTHO05D005644 2.5e-70 269.2 199 64.8
RcHm_v2.0_Chr2g0123461 Rosa chinensis HOM05D004715 ORTHO05D005644 3.3e-70 268.9 200 64.5
FvH4_1g25440 Fragaria vesca HOM05D004715 ORTHO05D005644 1.6e-69 266.5 200 63.5
Glyma.04G133700 Glycine max HOM05D004715 ORTHO05D005644 3.6e-69 265.4 203 62.6
BolC6t38064H Brassica oleracea HOM05D004715 ORTHO05D005644 4.7e-69 265.0 194 62.9
Lsat_1_v5_gn_5_132400 Lactuca sativa HOM05D004715 ORTHO05D005644 1.2e-67 260.4 202 60.4
FAN19G1260 Fragaria x ananassa HOM05D000191 ORTHO05D005644 2.0e-67 259.6 194 63.4
MD17G1206800 Malus domestica HOM05D004715 ORTHO05D005644 2.0e-67 259.6 202 62.4
AUR62000794 Chenopodium quinoa HOM05D004715 ORTHO05D005644 2.6e-67 259.2 203 62.6
Nn7g35903 Nelumbo nucifera HOM05D004715 ORTHO05D005644 3.4e-67 258.8 201 61.7
PGR102G1320 Punica granatum HOM05D004715 ORTHO05D005644 5.8e-67 258.1 199 62.3
FAN26G3166 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.7e-66 256.5 194 62.9
FAN28G2078 Fragaria x ananassa HOM05D004715 ORTHO05D005644 2.9e-66 255.8 194 62.9
DCAR_025488 Daucus carota HOM05D004715 ORTHO05D005644 8.3e-66 254.2 202 60.4
Glyma.07G105000 Glycine max HOM05D004715 ORTHO05D005644 9.2e-65 250.8 203 60.6
HanXRQChr15g0463891 Helianthus annuus HOM05D004715 ORTHO05D005644 9.2e-65 250.8 202 60.4
Os05g0453900 Oryza sativa ssp. japonica HOM05D004715 ORTHO05D005644 9.2e-65 250.8 198 58.6
SGA_v2.0_scaffold5G02664 Striga asiatica HOM05D004715 ORTHO05D005644 9.2e-65 250.8 229 56.8
PSO384G1744 Papaver somniferum HOM05D004715 ORTHO05D005644 1.2e-64 250.4 202 59.9
Sc14g0006620 Simmondsia chinensis HOM05D004715 ORTHO05D005644 6.0e-64 248.1 203 60.1
EL10Ac4g09393 Beta vulgaris HOM05D004715 ORTHO05D005644 7.8e-64 247.7 203 59.6
Hma1.2p1_0317F.1_g123670 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.0e-63 247.3 202 59.4
Hma1.2p1_1398F.1_g280822 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.0e-63 247.3 202 59.4
Dinv30576 Davidia involucrata HOM05D004715 ORTHO05D005644 1.7e-63 246.5 202 59.9
PSO339G1448 Papaver somniferum HOM05D004715 ORTHO05D005644 1.7e-63 246.5 202 59.4
HPP92_025406 Vanilla planifolia HOM05D004715 ORTHO05D005644 1.7e-63 246.5 198 56.6
Hma1.2p1_1398F.1_g280805 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 3.0e-63 245.7 202 58.9
CSS0021095 Camellia sinensis var. sinensis HOM05D004715 ORTHO05D005644 1.1e-62 243.8 200 60.0
Lj5A69G39 Lonicera japonica HOM05D004715 ORTHO05D005644 1.1e-62 243.8 235 54.9
AUR62005173 Chenopodium quinoa HOM05D004715 ORTHO05D005644 1.5e-62 243.4 192 61.5
Hund21699 Selenicereus undatus HOM05D004715 ORTHO05D005644 7.3e-62 241.1 197 60.4
Oeu052278.1 Olea europaea HOM05D004715 ORTHO05D005644 2.1e-61 239.6 229 54.1
Actinidia01764 Actinidia chinensis HOM05D004715 ORTHO05D005644 3.6e-61 238.8 199 57.8
Eucgr.F02544 Eucalyptus grandis HOM05D004715 ORTHO05D005644 4.7e-61 238.4 174 67.8
SEGI_27675 Sequoiadendron giganteum HOM05D004715 ORTHO05D005644 5.2e-60 235.0 198 54.5
Rhsim08G0215800 Rhododendron simsii HOM05D004715 ORTHO05D005644 6.8e-60 234.6 232 52.2
Atru.BG.159.p Acer truncatum HOM05D004715 ORTHO05D005644 1.5e-59 233.4 146 76.7
CDE02G3949 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 2.6e-59 232.6 198 55.6
MSTRG.11119 Avicennia marina HOM05D004715 ORTHO05D005644 3.4e-59 232.3 228 53.9
Ah.06g189580 Amaranthus hybridus HOM05D004715 ORTHO05D005644 5.8e-59 231.5 192 57.8
Migut.I00797 Erythranthe guttata HOM05D004715 ORTHO05D005644 6.4e-58 228.0 229 51.5
Haze_16520 Corylus avellana HOM05D004715 ORTHO05D005644 1.9e-57 226.5 202 58.9
Cc04_g04100 Coffea canephora HOM05D004715 ORTHO05D005644 4.1e-57 225.3 209 56.5
vmacro18968 Vaccinium macrocarpon HOM05D004715 ORTHO05D005644 7.1e-57 224.6 250 48.4
CAN.G1830.13 Capsicum annuum HOM05D004715 ORTHO05D005644 2.1e-56 223.0 235 51.5
SGA_v2.0_scaffold5G02667 Striga asiatica HOM05D005082 ORTHO05D006474 2.7e-56 222.6 233 51.1
PGSC0003DMG403012981 Solanum tuberosum HOM05D004715 ORTHO05D005644 1.0e-55 220.7 235 50.6
Solyc09g008630.3 Solanum lycopersicum HOM05D004715 ORTHO05D005644 6.6e-55 218.0 232 50.4
Sopen09g003430 Solanum pennellii HOM05D004715 ORTHO05D005644 3.3e-54 215.7 232 49.6
Nitab4.5_0004281g0110 Nicotiana tabacum HOM05D004715 ORTHO05D005644 9.5e-54 214.2 226 51.8
ATR0210G050 Amborella trichopoda HOM05D004715 ORTHO05D005644 1.2e-53 213.8 176 58.5
A07p26560 Brassica napus HOM05D004715 ORTHO05D005644 3.6e-53 212.2 154 63.0
VMungo1080G0231 Vigna mungo HOM05D006110 ORTHO05D007774 2.6e-51 206.1 146 69.2
Oeu063807.1 Olea europaea HOM05D004715 ORTHO05D005644 7.6e-51 204.5 155 63.9
TPR.G1414 Trifolium pratense HOM05D004715 ORTHO05D005644 7.1e-49 198.0 151 62.9
unitig_0.g2002 Utricularia gibba HOM05D004715 ORTHO05D005644 1.6e-48 196.8 254 42.5
SalBow2G3045 Salvia bowleyana HOM05D004715 ORTHO05D005644 2.7e-48 196.1 194 54.1
SMO347G0348 Selaginella moellendorffii HOM05D004715 ORTHO05D005644 4.6e-48 195.3 193 46.1
Nitab4.5_0006709g0030 Nicotiana tabacum HOM05D004715 ORTHO05D005644 1.5e-46 190.3 207 50.2
AagrBONN_evm.TU.Sc2ySwM_368.872 Anthoceros agrestis HOM05D004715 ORTHO05D005644 3.3e-46 189.1 199 44.7
Psat5g222760 Pisum sativum HOM05D004715 ORTHO05D005644 1.2e-43 180.6 147 57.8
Pp3c20_16980 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.8e-43 178.3 203 44.8
Pp3c20_17250 Physcomitrium patens HOM05D004715 ORTHO05D005644 5.8e-43 178.3 203 44.8
VMungo0331G0566 Vigna mungo HOM05D004715 ORTHO05D005644 5.8e-43 178.3 177 55.9
Rhsim03G0103800 Rhododendron simsii HOM05D004715 ORTHO05D005644 1.3e-42 177.2 200 47.0
TPR.G18869 Trifolium pratense HOM05D004715 ORTHO05D005644 2.2e-42 176.4 137 61.3
Zm00001eb065860 Zea mays HOM05D004715 ORTHO05D005644 2.9e-42 176.0 198 45.5
Peaxi162Scf00125g00003 Petunia axillaris HOM05D004715 ORTHO05D005644 4.9e-42 175.3 161 57.1
TPR.G1424 Trifolium pratense HOM05D004715 ORTHO05D005644 1.9e-41 173.3 194 51.5
Gohir.A10G076000 Gossypium hirsutum HOM05D004715 ORTHO05D005644 3.2e-41 172.6 116 72.4
CBR_g20274 Chara braunii HOM05D006908 ORTHO05D008662 9.3e-41 171.0 199 43.7
FAN14G0801 Fragaria x ananassa HOM05D004715 ORTHO05D005644 1.6e-40 170.2 201 48.8
BraA07t30299Z Brassica rapa HOM05D004715 ORTHO05D005644 1.7e-39 166.8 111 66.7
COL.COLO4_12914 Corchorus olitorius HOM05D004715 ORTHO05D005644 8.7e-39 164.5 111 69.4
ECA234G4462 Erigeron canadensis HOM05D004715 ORTHO05D005644 1.5e-38 163.7 153 52.3
Peaxi162Scf01195g00016 Petunia axillaris HOM05D004715 ORTHO05D005644 3.3e-38 162.5 194 47.4
Rhsim03G0101400 Rhododendron simsii HOM05D004715 ORTHO05D005644 4.8e-37 158.7 193 44.0
MBI14_g02860_MAGBIO Magnolia biondii HOM05D004715 ORTHO05D005644 9.0e-36 154.5 120 62.5
Mapoly0008s0246 Marchantia polymorpha HOM05D004715 ORTHO05D005644 3.4e-35 152.5 204 39.2
TAR369G0577 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.3e-34 150.6 202 41.1
CDE09G0533 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 6.0e-32 141.7 122 52.5
Cc00_g27240 Coffea canephora HOM05D004715 ORTHO05D005644 6.0e-32 141.7 153 51.6
MCO12G383 Micromonas commoda HOM05D004715 ORTHO05D005644 1.5e-30 137.1 199 34.2
Ca_26811_v3 Cicer arietinum L. HOM05D004715 ORTHO05D005644 1.4e-28 130.6 116 55.2
CDE09G0914 Ceratophyllum demersum HOM05D004715 ORTHO05D005644 3.1e-28 129.4 122 53.3
TPR.G30851 Trifolium pratense HOM05D004715 ORTHO05D005644 4.0e-28 129.0 82 76.8
Gohir.A10G075900 Gossypium hirsutum HOM05D004715 ORTHO05D005644 2.0e-27 126.7 86 66.3
TPR.G13435 Trifolium pratense HOM05D004715 ORTHO05D005644 6.4e-26 121.7 116 52.6
FvH4_6g30230 Fragaria vesca HOM05D004715 ORTHO05D005644 1.1e-25 120.9 200 39.0
Medtr7g052330 Medicago truncatula HOM05D004715 ORTHO05D005644 2.9e-18 96.3 128 44.5
PRCOL_00005608 Prasinoderma coloniale HOM05D004715 ORTHO05D005644 3.8e-18 95.9 206 29.1
TAR623G1252 Trochodendron aralioides HOM05D004715 ORTHO05D005644 1.4e-17 94.0 60 75.0
Cre03.g161050 Chlamydomonas reinhardtii HOM05D004715 ORTHO05D005644 1.9e-17 93.6 207 28.5
Hma1.2p1_1398F.1_g280810 Hydrangea macrophylla HOM05D004715 ORTHO05D005644 1.3e-15 87.4 58 74.1
SHI09667 Sapria himalayana HOM05D000105 ORTHO05D000023 1.1e-12 77.8 54 63.0
MSTRG.22727 Avicennia marina HOM05D004715 ORTHO05D005644 1.0e-10 71.2 69 47.8
HanXRQChr09g0268691 Helianthus annuus HOM05D004715 ORTHO05D005644 6.1e-08 62.0 49 51.0
Cfa026515 Carpinus fangiana HOM05D040851 ORTHO05D024893 1.1e-06 57.8 204 25.5


User provided reference genes

Program Settings