Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G096100 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1656.3 867 100.0
Potri.016G110800 Populus trichocarpa HOM05D001476 ORTHO05D006149 0.0e+00 1513.0 867 90.1
Manes.09G101900 Manihot esculenta HOM05D001476 ORTHO05D006149 0.0e+00 1355.1 876 80.3
TWI74G1595 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1328.9 888 77.7
GSVIVG01034014001 Vitis vinifera HOM05D001476 ORTHO05D006149 0.0e+00 1325.8 874 79.5
Ciclev10011050m.g Citrus clementina HOM05D001476 ORTHO05D006149 0.0e+00 1322.8 881 78.0
TWI77G0827 Tripterygium wilfordii HOM05D001476 ORTHO05D006149 0.0e+00 1321.2 912 76.1
Thecc.05G022500 Theobroma cacao HOM05D001476 ORTHO05D006149 0.0e+00 1319.3 869 78.7
TAR402G0001 Trochodendron aralioides HOM05D001476 ORTHO05D006149 0.0e+00 1317.8 879 77.7
Actinidia13780 Actinidia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1317.4 873 78.7
Gohir.D09G158600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1314.7 866 79.2
Gohir.A09G163100 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1313.5 866 79.3
Dinv35515 Davidia involucrata HOM05D001476 ORTHO05D006149 0.0e+00 1310.8 870 78.9
Duzib128G0639 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1310.4 870 77.9
Gorai.006G180300 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1307.7 880 78.0
CSS0024803 Camellia sinensis var. sinensis HOM05D001476 ORTHO05D006149 0.0e+00 1303.5 869 77.7
Cpa.g.sc56.111 Carica papaya HOM05D001476 ORTHO05D006149 0.0e+00 1300.4 875 77.1
PGR031G2805 Punica granatum HOM05D001476 ORTHO05D006149 0.0e+00 1296.6 870 77.4
Hma1.2p1_0763F.1_g214610 Hydrangea macrophylla HOM05D001476 ORTHO05D006149 0.0e+00 1283.5 873 76.9
Haze_20947 Corylus avellana HOM05D001476 ORTHO05D006149 0.0e+00 1283.1 938 72.4
Eucgr.B02781 Eucalyptus grandis HOM05D001476 ORTHO05D006149 0.0e+00 1281.2 871 78.1
Gorai.012G111700 Gossypium raimondii HOM05D001476 ORTHO05D006149 0.0e+00 1280.0 866 76.2
ClCG04G007260 Citrullus lanatus HOM05D001476 ORTHO05D006149 0.0e+00 1279.2 878 75.5
Prupe.6G270500 Prunus persica HOM05D001476 ORTHO05D006149 0.0e+00 1277.3 897 75.0
THA.LOC104816221 Tarenaya hassleriana HOM05D001476 ORTHO05D006149 0.0e+00 1277.3 930 71.9
Lj3g0014893 Lotus japonicus HOM05D001476 ORTHO05D006149 0.0e+00 1271.9 864 76.2
Thhalv10020022m.g Eutrema salsugineum HOM05D001476 ORTHO05D006149 0.0e+00 1270.4 902 74.5
Aqoxy1G00720 Aquilegia oxysepala HOM05D001476 ORTHO05D006149 0.0e+00 1270.0 847 77.2
Ca_23816_v3 Cicer arietinum L. HOM05D001476 ORTHO05D006149 0.0e+00 1269.2 869 75.6
Gohir.D04G128600 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1269.2 867 76.0
MELO3C003223.2 Cucumis melo HOM05D001476 ORTHO05D006149 0.0e+00 1265.4 880 75.2
Nn2g13602 Nelumbo nucifera HOM05D001476 ORTHO05D006149 0.0e+00 1265.0 875 75.3
Sed0003764 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1265.0 878 74.3
CsaV3_4G025980 Cucumis sativus L. HOM05D001476 ORTHO05D006149 0.0e+00 1264.6 884 74.4
Sp3g07550 Schrenkiella parvula HOM05D001476 ORTHO05D006149 0.0e+00 1263.4 882 74.7
FvH4_6g12060 Fragaria vesca HOM05D001476 ORTHO05D006149 0.0e+00 1261.5 914 72.4
CANSAT35G0098 Cannabis sativa HOM05D001476 ORTHO05D006149 0.0e+00 1256.1 877 76.1
Carub.0003s0826 Capsella rubella HOM05D001476 ORTHO05D006149 0.0e+00 1255.7 901 73.0
CiPaw.09G205700 Carya illinoinensis HOM05D001476 ORTHO05D006149 0.0e+00 1254.6 891 73.8
AT3G09090 Arabidopsis thaliana HOM05D001476 ORTHO05D006149 0.0e+00 1253.8 902 73.5
Atru.chr8.2151 Acer truncatum HOM05D001476 ORTHO05D006149 0.0e+00 1250.0 911 74.4
AL3G20170 Arabidopsis lyrata HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 907 72.7
BcaC09g48009 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1247.3 898 73.2
CARHR083470 Cardamine hirsuta HOM05D001476 ORTHO05D006149 0.0e+00 1243.4 901 73.3
Nitab4.5_0011723g0020 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1239.9 885 73.1
BolC1t05473H Brassica oleracea HOM05D001476 ORTHO05D006149 0.0e+00 1239.6 904 72.3
Nitab4.5_0000008g0700 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1238.8 885 72.9
PSO210G1670 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1236.5 852 75.2
SGA_v2.0_scaffold22G09908 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1236.1 886 72.9
ECA236G3430 Erigeron canadensis HOM05D001476 ORTHO05D006149 0.0e+00 1235.7 861 74.1
Glyma.01G111300 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1235.3 891 72.7
Glyma.03G076900 Glycine max HOM05D001476 ORTHO05D006149 0.0e+00 1233.8 906 71.5
Sed0007041 Sechium edule HOM05D001476 ORTHO05D006149 0.0e+00 1232.6 920 70.5
Cc06_g01690 Coffea canephora HOM05D001476 ORTHO05D006149 0.0e+00 1232.2 879 71.1
Psat0s2261g0240 Pisum sativum HOM05D001476 ORTHO05D006149 0.0e+00 1231.9 893 74.2
Migut.J00228 Erythranthe guttata HOM05D001476 ORTHO05D006149 0.0e+00 1231.5 885 73.1
BcaC09g48054 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1231.1 903 71.8
PSO832G0213 Papaver somniferum HOM05D001476 ORTHO05D006149 0.0e+00 1228.4 851 75.1
Rhsim05G0205700 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1226.5 861 74.4
Medtr4g014960 Medicago truncatula HOM05D001476 ORTHO05D006149 0.0e+00 1225.3 880 73.9
FAN05G2912 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1221.8 914 71.2
FAN09G2729 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1221.1 929 70.3
Nitab4.5_0004912g0100 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1219.1 886 71.6
SGA_v2.0_scaffold85G26765 Striga asiatica HOM05D001476 ORTHO05D006149 0.0e+00 1215.3 889 72.1
TPR.G5272 Trifolium pratense HOM05D001476 ORTHO05D006149 0.0e+00 1214.1 895 72.3
FAN14G1008 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1213.7 929 70.1
BraA01t04314Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1213.4 892 71.9
FAN14G2619 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1212.6 929 70.0
Sc24g0002110 Simmondsia chinensis HOM05D001476 ORTHO05D006149 0.0e+00 1211.8 913 70.5
MD04G1146700 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1207.6 897 72.1
FAN02G1993 Fragaria x ananassa HOM05D001476 ORTHO05D006149 0.0e+00 1205.7 914 70.5
HanXRQChr16g0507821 Helianthus annuus HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 875 74.1
Sopen10g034520 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1203.7 888 70.7
EL10Ac5g11563 Beta vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1201.4 937 68.6
A05p39780 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 897 71.9
C05p58820 Brassica napus HOM05D001476 ORTHO05D006149 0.0e+00 1201.0 897 71.3
VMungo0331G0441 Vigna mungo HOM05D001476 ORTHO05D006149 0.0e+00 1199.9 901 69.7
SalBow5G4659 Salvia bowleyana HOM05D001476 ORTHO05D006149 0.0e+00 1199.1 948 67.6
Aa31LG3G1620 Aethionema arabicum HOM05D001476 ORTHO05D006149 0.0e+00 1198.3 910 69.7
Solyc09g013130.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 0.0e+00 1195.6 895 70.4
DCAR_024038 Daucus carota HOM05D001476 ORTHO05D006149 0.0e+00 1195.3 883 71.2
Phvul.010G008300 Phaseolus vulgaris HOM05D001476 ORTHO05D006149 0.0e+00 1194.9 932 67.4
BraA05t22762Z Brassica rapa HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 913 70.4
Oeu004614.2 Olea europaea HOM05D001476 ORTHO05D006149 0.0e+00 1194.5 884 74.1
MD12G1159900 Malus domestica HOM05D001476 ORTHO05D006149 0.0e+00 1193.3 920 70.1
CAN.G355.19 Capsicum annuum HOM05D001476 ORTHO05D006149 0.0e+00 1192.2 881 71.6
Peaxi162Scf00141g00813 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1191.4 843 73.4
Lalb_Chr07g0193321 Lupinus albus HOM05D001476 ORTHO05D006149 0.0e+00 1189.5 969 66.7
Sopen09g006990 Solanum pennellii HOM05D001476 ORTHO05D006149 0.0e+00 1187.9 895 70.2
Peaxi162Scf00009g02022 Petunia axillaris HOM05D001476 ORTHO05D006149 0.0e+00 1187.6 870 71.5
PGSC0003DMG400011017 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1185.6 875 71.1
HPP92_018041 Vanilla planifolia HOM05D001476 ORTHO05D006149 0.0e+00 1171.8 851 71.1
Duzib106G0695 Durio zibethinus HOM05D001476 ORTHO05D006149 0.0e+00 1169.5 869 70.1
Nitab4.5_0000652g0160 Nicotiana tabacum HOM05D001476 ORTHO05D006149 0.0e+00 1164.1 847 72.0
Sabra06G0073800 Salix brachista HOM05D001476 ORTHO05D002681 0.0e+00 1162.5 874 75.4
Cfa017258 Carpinus fangiana HOM05D001476 ORTHO05D002681 0.0e+00 1161.7 861 72.2
Lj3A957T35 Lonicera japonica HOM05D001476 ORTHO05D006149 0.0e+00 1159.4 960 66.4
arahy.Tifrunner.gnm1.ann1.5UT5JQ Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1157.1 900 70.7
arahy.Tifrunner.gnm1.ann1.VBIR99 Arachis hypogaea HOM05D001476 ORTHO05D006149 0.0e+00 1154.4 910 70.0
BcaC05g29640 Brassica carinata HOM05D001476 ORTHO05D006149 0.0e+00 1154.4 902 69.1
ATR0618G171 Amborella trichopoda HOM05D001476 ORTHO05D006149 0.0e+00 1153.3 825 72.7
CDE04G3748 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 0.0e+00 1150.6 863 69.3
Sabra16G0107400 Salix brachista HOM05D001476 ORTHO05D006149 0.0e+00 1145.6 959 68.2
Rhsim05G0205800 Rhododendron simsii HOM05D001476 ORTHO05D006149 0.0e+00 1140.6 916 66.2
PGSC0003DMG400020350 Solanum tuberosum HOM05D001476 ORTHO05D006149 0.0e+00 1134.8 1029 60.8
Lsat_1_v5_gn_8_99901 Lactuca sativa HOM05D001476 ORTHO05D006149 0.0e+00 1129.4 835 71.7
Zm00001eb063130 Zea mays HOM05D001476 ORTHO05D006149 0.0e+00 1121.3 866 67.2
unitig_699.g19385 Utricularia gibba HOM05D001476 ORTHO05D006149 0.0e+00 1119.0 868 68.3
vmacro20235 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 0.0e+00 1113.6 818 72.7
Gohir.A04G088225 Gossypium hirsutum HOM05D001476 ORTHO05D006149 0.0e+00 1110.5 762 73.6
Os03g0825700 Oryza sativa ssp. japonica HOM05D001476 ORTHO05D006149 0.0e+00 1096.6 845 67.5
CDE03G0023 Ceratophyllum demersum HOM05D001476 ORTHO05D006149 1.2e-307 1059.7 863 63.0
Oeu044363.1 Olea europaea HOM05D001476 ORTHO05D006149 5.9e-302 1040.8 851 65.1
Ah.11g045320 Amaranthus hybridus HOM05D001476 ORTHO05D006149 2.8e-296 1021.9 903 63.1
Solyc10g085060.3 Solanum lycopersicum HOM05D001476 ORTHO05D006149 5.0e-285 984.6 724 69.6
RcHm_v2.0_Chr3g0463911 Rosa chinensis HOM05D001476 ORTHO05D006149 3.5e-278 961.8 748 69.5
MSTRG.5600 Avicennia marina HOM05D001476 ORTHO05D006149 2.2e-277 959.1 717 71.5
Lsat_1_v5_gn_0_44361 Lactuca sativa HOM05D001476 ORTHO05D006149 2.2e-277 959.1 726 68.6
CAN.G1297.2 Capsicum annuum HOM05D001476 ORTHO05D006149 6.3e-272 941.0 572 80.4
Pp3c20_710 Physcomitrium patens HOM05D001476 ORTHO05D006149 2.0e-270 936.0 851 56.3
Mapoly0103s0063 Marchantia polymorpha HOM05D001476 ORTHO05D006149 4.9e-264 914.8 873 56.4
TAR636G2437 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.2e-262 910.2 505 85.7
SMO145G0033 Selaginella moellendorffii HOM05D001476 ORTHO05D006149 1.2e-257 893.6 863 56.2
SEGI_02222 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 3.6e-243 845.5 694 66.4
AagrBONN_evm.TU.Sc2ySwM_369.563 Anthoceros agrestis HOM05D001476 ORTHO05D006149 4.6e-190 669.1 639 58.5
SHI12782 Sapria himalayana HOM05D001476 ORTHO05D006149 5.9e-185 652.1 538 67.1
AUR62043525 Chenopodium quinoa HOM05D001476 ORTHO05D006149 9.1e-178 628.2 384 78.1
TPR.G6686 Trifolium pratense HOM05D001476 ORTHO05D006149 1.0e-176 624.8 371 80.6
COL.COLO4_14599 Corchorus olitorius HOM05D001476 ORTHO05D006149 5.2e-173 612.5 352 84.7
AUR62044509 Chenopodium quinoa HOM05D001476 ORTHO05D006149 3.7e-171 606.3 341 83.0
AUR62043103 Chenopodium quinoa HOM05D001476 ORTHO05D006149 1.9e-167 594.0 360 78.1
vmacro17486 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 2.4e-162 577.0 442 68.6
AUR62043102 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.1e-158 563.9 539 61.2
CBR_g8542 Chara braunii HOM05D001476 ORTHO05D006149 4.4e-140 503.1 691 43.8
MCO10G178 Micromonas commoda HOM05D001476 ORTHO05D006149 2.2e-139 500.7 859 38.6
Cre04.g214097 Chlamydomonas reinhardtii HOM05D001476 ORTHO05D006149 4.3e-135 486.5 985 37.8
SHI12784 Sapria himalayana HOM05D001476 ORTHO05D006149 1.5e-127 461.5 300 74.7
BcaC09g47968 Brassica carinata HOM05D001476 ORTHO05D006149 5.4e-114 416.4 292 71.9
COL.COLO4_14600 Corchorus olitorius HOM05D001476 ORTHO05D006149 1.0e-112 412.1 505 52.1
AUR62043524 Chenopodium quinoa HOM05D001476 ORTHO05D006149 2.3e-112 411.0 450 57.1
PRCOL_00002974 Prasinoderma coloniale HOM05D001476 ORTHO05D006149 7.9e-105 386.0 991 31.1
Actinidia29132 Actinidia chinensis HOM05D001476 ORTHO05D006149 4.8e-102 376.7 624 41.3
TAR636G0462 Trochodendron aralioides HOM05D001476 ORTHO05D006149 3.8e-91 340.5 357 61.6
RcHm_v2.0_Chr3g0463901 Rosa chinensis HOM05D001476 ORTHO05D006149 3.2e-74 284.3 165 81.2
Dinv37085 Davidia involucrata HOM05D001476 ORTHO05D002681 5.9e-52 210.3 329 41.0
BolC5t34534H Brassica oleracea HOM05D001476 ORTHO05D002681 8.8e-48 196.4 137 82.5
Hund31411 Selenicereus undatus HOM05D001476 ORTHO05D006149 1.7e-43 182.2 104 84.6
SEGI_09667 Sequoiadendron giganteum HOM05D001476 ORTHO05D006149 1.2e-39 169.5 107 72.0
vmacro17485 Vaccinium macrocarpon HOM05D001476 ORTHO05D006149 1.7e-38 165.6 107 76.6
MSTRG.19033 Avicennia marina HOM05D001476 ORTHO05D031643 8.9e-32 143.3 86 76.7
FAN23G1187 Fragaria x ananassa HOM05D001476 ORTHO05D031643 2.9e-22 111.7 86 64.0
TAR629G0215 Trochodendron aralioides HOM05D000393 ORTHO05D000275 4.6e-20 104.4 91 60.4
Rhsim09G0090000 Rhododendron simsii HOM05D001476 ORTHO05D034934 7.8e-20 103.6 77 66.2
TAR381G0471 Trochodendron aralioides HOM05D000141 ORTHO05D000780 7.8e-20 103.6 117 57.3
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 5.8e-15 87.4 88 52.3
FAN19G0609 Fragaria x ananassa HOM05D014108 ORTHO05D015280 2.9e-14 85.1 94 50.0
TAR626G1231 Trochodendron aralioides HOM05D000393 ORTHO05D000275 8.3e-14 83.6 57 68.4
TAR369G0367 Trochodendron aralioides HOM05D001309 ORTHO05D000385 3.2e-13 81.6 45 82.2
GSVIVG01021923001 Vitis vinifera HOM05D001476 ORTHO05D006149 7.8e-12 77.0 66 56.1
TAR636G0366 Trochodendron aralioides HOM05D001476 ORTHO05D006149 1.7e-11 75.9 53 73.6
MELO3C011527.2 Cucumis melo HOM05D001476 ORTHO05D034934 5.6e-10 70.9 40 75.0
Rhsim05G0112000 Rhododendron simsii HOM05D047264 ORTHO05D021376 1.6e-09 69.3 58 60.3
TWI53G1805 Tripterygium wilfordii HOM05D001476 ORTHO05D031643 4.7e-09 67.8 52 65.4
Rhsim06G0121600 Rhododendron simsii HOM05D001476 ORTHO05D034934 3.4e-07 61.6 47 66.0


User provided reference genes

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