Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G072800 Populus trichocarpa HOM05D006474 ORTHO05D007994 2.6e-258 894.8 425 100.0
Sabra06G0054200 Salix brachista HOM05D006474 ORTHO05D007994 3.3e-242 841.3 425 94.1
Manes.06G017600 Manihot esculenta HOM05D006474 ORTHO05D007994 7.1e-192 674.1 400 78.5
GSVIVG01029282001 Vitis vinifera HOM05D006474 ORTHO05D007994 1.0e-182 643.7 361 80.3
Cpa.g.sc115.63 Carica papaya HOM05D006474 ORTHO05D007994 9.6e-181 637.1 407 73.2
CiPaw.07G199100 Carya illinoinensis HOM05D006474 ORTHO05D007994 1.3e-180 636.7 421 71.0
PGR142G0270 Punica granatum HOM05D006474 ORTHO05D007994 1.8e-179 632.9 367 79.0
QL02p064597 Quercus lobata HOM05D006474 ORTHO05D007994 1.5e-178 629.8 375 79.2
TAR383G1087 Trochodendron aralioides HOM05D006474 ORTHO05D007994 9.9e-178 627.1 369 77.5
arahy.Tifrunner.gnm1.ann1.HVXZ0P Arachis hypogaea HOM05D006474 ORTHO05D007994 4.2e-176 621.7 384 73.7
Eucgr.C00087 Eucalyptus grandis HOM05D006474 ORTHO05D007994 2.1e-175 619.4 429 68.1
Thecc.04G204000 Theobroma cacao HOM05D006474 ORTHO05D007994 2.1e-175 619.4 413 72.2
RcHm_v2.0_Chr4g0398871 Rosa chinensis HOM05D006474 ORTHO05D007994 3.5e-175 618.6 366 76.8
FvH4_4g06930 Fragaria vesca HOM05D006474 ORTHO05D007994 4.6e-175 618.2 366 77.3
FAN07G0584 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.0e-174 617.1 366 77.0
Haze_22046 Corylus avellana HOM05D006474 ORTHO05D007994 1.8e-174 616.3 492 62.6
Lalb_Chr07g0180731 Lupinus albus HOM05D006474 ORTHO05D007994 2.3e-174 615.9 379 73.9
Lj4g0020492 Lotus japonicus HOM05D006474 ORTHO05D007994 3.9e-174 615.1 379 74.1
PSO063G0500 Papaver somniferum HOM05D006474 ORTHO05D007994 3.9e-174 615.1 410 70.2
Ca_21263_v3 Cicer arietinum L. HOM05D006474 ORTHO05D007994 5.1e-174 614.8 383 73.9
DCAR_020143 Daucus carota HOM05D006474 ORTHO05D007994 6.7e-174 614.4 360 76.9
COL.COLO4_37571 Corchorus olitorius HOM05D006474 ORTHO05D007994 8.7e-174 614.0 361 76.5
FAN12G2823 Fragaria x ananassa HOM05D006474 ORTHO05D007994 8.7e-174 614.0 366 76.8
Aqoxy7G02891 Aquilegia oxysepala HOM05D006474 ORTHO05D007994 1.5e-173 613.2 367 75.2
FAN17G1111 Fragaria x ananassa HOM05D006474 ORTHO05D007994 1.5e-173 613.2 366 76.2
TWI32G0724 Tripterygium wilfordii HOM05D006474 ORTHO05D007994 1.9e-173 612.8 424 67.9
Actinidia38505 Actinidia chinensis HOM05D006474 ORTHO05D007994 2.5e-173 612.5 362 77.3
Sopen07g004200 Solanum pennellii HOM05D006474 ORTHO05D007994 2.5e-173 612.5 391 72.1
PGSC0003DMG400019888 Solanum tuberosum HOM05D006474 ORTHO05D007994 2.8e-172 609.0 369 74.8
Nitab4.5_0000028g0400 Nicotiana tabacum HOM05D006474 ORTHO05D007994 3.7e-172 608.6 382 73.3
Cc01_g11810 Coffea canephora HOM05D006474 ORTHO05D007994 6.2e-172 607.8 378 73.8
Nitab4.5_0004916g0010 Nicotiana tabacum HOM05D006474 ORTHO05D007994 1.1e-171 607.1 389 72.2
MD13G1241100 Malus domestica HOM05D006474 ORTHO05D007994 1.8e-171 606.3 367 75.2
ECA236G3875 Erigeron canadensis HOM05D006474 ORTHO05D007994 2.4e-171 605.9 397 68.8
Duzib170G0180 Durio zibethinus HOM05D006474 ORTHO05D007994 3.1e-171 605.5 439 66.5
Gohir.A05G408600 Gossypium hirsutum HOM05D006474 ORTHO05D007994 5.3e-171 604.7 414 69.6
Solyc07g008310.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 5.3e-171 604.7 421 68.2
Ciclev10008481m.g Citrus clementina HOM05D006474 ORTHO05D007994 1.2e-170 603.6 370 74.3
Glyma.17G057700 Glycine max HOM05D006474 ORTHO05D007994 1.5e-170 603.2 381 72.2
Medtr4g127130 Medicago truncatula HOM05D006474 ORTHO05D007994 7.6e-170 600.9 382 72.3
TPR.G5392 Trifolium pratense HOM05D006474 ORTHO05D007994 9.9e-170 600.5 382 72.0
ClCG03G011950 Citrullus lanatus HOM05D006474 ORTHO05D007994 1.3e-169 600.1 367 73.8
Peaxi162Scf00046g00533 Petunia axillaris HOM05D006474 ORTHO05D007994 1.1e-168 597.0 384 71.4
Gorai.012G008200 Gossypium raimondii HOM05D006474 ORTHO05D007994 1.4e-168 596.7 416 68.8
HanXRQChr06g0181391 Helianthus annuus HOM05D006474 ORTHO05D007994 1.4e-168 596.7 417 65.2
CsaV3_1G043980 Cucumis sativus L. HOM05D006474 ORTHO05D007994 1.9e-168 596.3 363 74.4
Sc14g0003050 Simmondsia chinensis HOM05D006474 ORTHO05D007994 2.4e-168 595.9 367 73.6
arahy.Tifrunner.gnm1.ann1.Z6GGIF Arachis hypogaea HOM05D006474 ORTHO05D007994 4.6e-167 591.7 399 67.9
vmacro20800 Vaccinium macrocarpon HOM05D006474 ORTHO05D007994 1.0e-166 590.5 392 69.9
MELO3C009992.2 Cucumis melo HOM05D006474 ORTHO05D007994 1.1e-165 587.0 363 73.0
MSTRG.5932 Avicennia marina HOM05D006474 ORTHO05D007994 2.5e-165 585.9 382 68.8
Migut.J00779 Erythranthe guttata HOM05D006474 ORTHO05D007994 2.5e-165 585.9 375 70.1
Nn8g40661 Nelumbo nucifera HOM05D006474 ORTHO05D007994 1.3e-164 583.6 344 77.3
MBI14_g10727_MAGBIO Magnolia biondii HOM05D006474 ORTHO05D007994 8.2e-164 580.9 379 70.4
EL10Ac8g19287 Beta vulgaris HOM05D006474 ORTHO05D007994 9.0e-163 577.4 368 70.9
HPP92_010297 Vanilla planifolia HOM05D006474 ORTHO05D007994 1.2e-162 577.0 373 70.0
Aa31LG2G20660 Aethionema arabicum HOM05D006474 ORTHO05D007994 1.5e-162 576.6 368 72.0
ATR0580G130 Amborella trichopoda HOM05D006474 ORTHO05D007994 4.5e-162 575.1 400 66.5
CARHR237790 Cardamine hirsuta HOM05D006474 ORTHO05D007994 2.9e-161 572.4 366 70.8
Dinv41197 Davidia involucrata HOM05D006474 ORTHO05D007994 8.4e-161 570.9 433 66.1
AL7G22360 Arabidopsis lyrata HOM05D006474 ORTHO05D007994 4.2e-160 568.5 366 71.0
Sp7g27700 Schrenkiella parvula HOM05D006474 ORTHO05D007994 9.3e-160 567.4 367 71.4
Thhalv10025251m.g Eutrema salsugineum HOM05D006474 ORTHO05D007994 2.1e-159 566.2 380 68.4
AT4G29890 Arabidopsis thaliana HOM05D006474 ORTHO05D007994 3.5e-159 565.5 366 70.5
SalBow1G1087 Salvia bowleyana HOM05D006474 ORTHO05D007994 1.3e-158 563.5 371 68.2
SGA_v2.0_scaffold112G31632 Striga asiatica HOM05D006474 ORTHO05D007994 2.3e-158 562.8 399 64.7
Os06g0698785 Oryza sativa ssp. japonica HOM05D006474 ORTHO05D007994 3.0e-158 562.4 373 67.8
Zm00001eb273050 Zea mays HOM05D006474 ORTHO05D007994 1.5e-157 560.1 378 66.1
Atru.BG.24.p Acer truncatum HOM05D006474 ORTHO05D007994 2.5e-157 559.3 344 76.2
Carub.0007s1076 Capsella rubella HOM05D006474 ORTHO05D007994 2.5e-157 559.3 426 63.4
CDE02G2399 Ceratophyllum demersum HOM05D006474 ORTHO05D007994 7.4e-157 557.8 361 68.4
Solyc07g008300.3 Solanum lycopersicum HOM05D006474 ORTHO05D007994 2.8e-156 555.8 375 69.1
AUR62027431 Chenopodium quinoa HOM05D006474 ORTHO05D007994 8.2e-156 554.3 382 64.4
Oeu035450.1 Olea europaea HOM05D006474 ORTHO05D007994 1.4e-155 553.5 364 69.5
BraA03t14988Z Brassica rapa HOM05D006474 ORTHO05D007994 2.4e-155 552.7 439 61.7
A03p59310 Brassica napus HOM05D006474 ORTHO05D007994 3.1e-155 552.4 439 61.7
Sed0005056 Sechium edule HOM05D006474 ORTHO05D007994 3.1e-155 552.4 417 63.3
C07p57320 Brassica napus HOM05D006474 ORTHO05D007994 1.5e-154 550.1 437 62.2
Prupe.1G072500 Prunus persica HOM05D006474 ORTHO05D007994 2.6e-154 549.3 366 70.8
Sopen07g004190 Solanum pennellii HOM05D006474 ORTHO05D007994 2.6e-154 549.3 365 69.0
Sed0007392 Sechium edule HOM05D006474 ORTHO05D007994 5.9e-154 548.1 382 65.2
BcaNung00499 Brassica carinata HOM05D006474 ORTHO05D007994 1.7e-153 546.6 435 61.6
BolC7t46201H Brassica oleracea HOM05D006474 ORTHO05D007994 5.0e-153 545.0 439 61.7
Gohir.D04G006800 Gossypium hirsutum HOM05D006474 ORTHO05D007994 1.1e-152 543.9 413 65.4
HanXRQChr06g0181381 Helianthus annuus HOM05D006474 ORTHO05D007994 4.6e-151 538.5 394 62.7
Rhsim01G0114400 Rhododendron simsii HOM05D006474 ORTHO05D007994 1.4e-150 537.0 323 76.5
Psat4g014320 Pisum sativum HOM05D006474 ORTHO05D007994 8.8e-150 534.3 384 65.4
CANSAT54G2413 Cannabis sativa HOM05D006474 ORTHO05D007994 3.1e-147 525.8 338 70.7
Migut.J00780 Erythranthe guttata HOM05D006474 ORTHO05D007994 3.8e-145 518.8 375 61.9
Lsat_1_v5_gn_8_68301 Lactuca sativa HOM05D006474 ORTHO05D007994 1.9e-144 516.5 376 65.2
CAN.G403.4 Capsicum annuum HOM05D006474 ORTHO05D007994 4.5e-138 495.4 317 71.6
Ah.14g085320 Amaranthus hybridus HOM05D006474 ORTHO05D007994 8.0e-135 484.6 324 68.8
SMO196G0177 Selaginella moellendorffii HOM05D006474 ORTHO05D007994 1.3e-132 477.2 397 57.4
Phvul.003G140100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 6.3e-132 474.9 287 73.9
AagrBONN_evm.TU.Sc2ySwM_117.1622 Anthoceros agrestis HOM05D006474 ORTHO05D007994 2.4e-131 473.0 380 56.6
AUR62032506 Chenopodium quinoa HOM05D006474 ORTHO05D007994 2.6e-130 469.5 366 57.1
AUR62043230 Chenopodium quinoa HOM05D006474 ORTHO05D007994 8.5e-129 464.5 366 56.8
AUR62031264 Chenopodium quinoa HOM05D006474 ORTHO05D007994 3.6e-127 459.1 302 67.9
PSO170G4238 Papaver somniferum HOM05D006474 ORTHO05D007994 6.1e-127 458.4 338 64.2
Pp3c13_13580 Physcomitrium patens HOM05D006474 ORTHO05D007994 6.7e-126 454.9 357 58.0
Mapoly0089s0013 Marchantia polymorpha HOM05D006474 ORTHO05D007994 5.2e-118 428.7 374 52.7
EL10Ac6g13937 Beta vulgaris HOM05D006474 ORTHO05D007994 4.2e-112 409.1 366 51.4
Lju50A4G45 Lonicera japonica HOM05D006474 ORTHO05D007994 2.8e-111 406.4 259 72.6
Cfa013469 Carpinus fangiana HOM05D006474 ORTHO05D007994 2.2e-108 396.7 272 70.6
CSS0012665 Camellia sinensis var. sinensis HOM05D006474 ORTHO05D007994 4.7e-103 379.0 226 78.8
MCO02G024 Micromonas commoda HOM05D006474 ORTHO05D007994 3.7e-92 342.8 361 47.4
FAN22G2051 Fragaria x ananassa HOM05D006474 ORTHO05D007994 4.3e-88 329.3 321 54.2
Hund22985 Selenicereus undatus HOM05D006474 ORTHO05D007994 3.2e-83 313.2 381 48.0
Lsat_1_v5_gn_9_69680 Lactuca sativa HOM05D006474 ORTHO05D007994 2.1e-71 273.9 237 59.9
Phvul.010G082000 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 2.7e-66 256.9 186 64.0
PRCOL_00004194 Prasinoderma coloniale HOM05D006474 ORTHO05D007994 6.2e-55 219.2 466 30.9
Lsat_1_v5_gn_5_32380 Lactuca sativa HOM05D006474 ORTHO05D007994 1.7e-52 211.1 194 53.6
Ah.03g136670 Amaranthus hybridus HOM05D006474 ORTHO05D007994 2.3e-49 200.7 234 42.7
SEGI_01125 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 6.5e-44 182.6 127 64.6
Phvul.011G131100 Phaseolus vulgaris HOM05D006474 ORTHO05D007994 3.2e-35 153.7 102 64.7
RcHm_v2.0_Chr4g0398881 Rosa chinensis HOM05D006474 ORTHO05D007994 9.4e-27 125.6 203 36.9
Actinidia29962 Actinidia chinensis HOM05D006474 ORTHO05D007994 1.4e-22 111.7 90 60.0
Gohir.A08G164600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 3.8e-20 103.6 86 57.0
Thecc.09G192500 Theobroma cacao HOM05D006474 ORTHO05D007994 5.5e-19 99.8 58 79.3
Gohir.A01G088200 Gossypium hirsutum HOM05D006474 ORTHO05D007994 3.0e-17 94.0 57 75.4
SEGI_13868 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 1.5e-16 91.7 58 77.6
Lsat_1_v5_gn_3_77541 Lactuca sativa HOM05D006474 ORTHO05D007994 1.6e-13 81.6 51 72.5
Oeu005633.1 Olea europaea HOM05D006474 ORTHO05D007994 1.6e-13 81.6 64 59.4
SEGI_25707 Sequoiadendron giganteum HOM05D006474 ORTHO05D007994 3.6e-10 70.5 42 64.3
Gohir.A05G306101 Gossypium hirsutum HOM05D005508 ORTHO05D007994 6.8e-09 66.2 40 70.0
Gohir.A06G077600 Gossypium hirsutum HOM05D000075 ORTHO05D000264 2.0e-08 64.7 71 49.3


User provided reference genes

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