Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G021200 Populus trichocarpa HOM05D003806 ORTHO05D004346 0.0e+00 1404.8 1326 100.0
Sabra16G0020700 Salix brachista HOM05D003806 ORTHO05D004346 1.1e-299 1033.9 1328 72.0
Sabra16G0025500 Salix brachista HOM05D003806 ORTHO05D004346 1.4e-299 1033.5 1328 72.0
Sabra06G0014700 Salix brachista HOM05D003806 ORTHO05D004346 2.1e-287 993.0 1326 70.5
Sabra06G0014600 Salix brachista HOM05D003806 ORTHO05D004346 8.4e-284 981.1 1326 69.2
Potri.016G018700 Populus trichocarpa HOM05D003806 ORTHO05D004346 6.3e-271 938.3 1328 76.3
TWI34G1284 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 5.2e-209 732.6 1330 58.7
Duzib138G1777 Durio zibethinus HOM05D003806 ORTHO05D004346 5.8e-192 676.0 1330 56.0
Prupe.3G186800 Prunus persica HOM05D003806 ORTHO05D004346 7.4e-187 659.1 1382 54.5
TWI60G0662 Tripterygium wilfordii HOM05D003806 ORTHO05D004346 1.5e-184 651.4 1329 53.6
Manes.09G072900 Manihot esculenta HOM05D003806 ORTHO05D004346 7.6e-176 622.5 1384 50.1
MD17G1128600 Malus domestica HOM05D003806 ORTHO05D004346 6.9e-169 599.4 1382 51.0
Cfa023525 Carpinus fangiana HOM05D003806 ORTHO05D004346 7.6e-168 595.9 1381 43.4
Dinv08951 Davidia involucrata HOM05D003806 ORTHO05D004346 9.3e-166 589.0 1300 52.8
Cpa.g.sc8.294 Carica papaya HOM05D003806 ORTHO05D004346 2.1e-165 587.8 1558 41.3
MD09G1138500 Malus domestica HOM05D003806 ORTHO05D004346 2.5e-163 580.9 1385 50.2
CSS0010582 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 1.8e-161 574.7 1337 53.2
Hma1.2p1_0401F.1_g144710 Hydrangea macrophylla HOM05D003806 ORTHO05D004346 3.1e-161 573.9 1327 52.9
Thecc.01G172500 Theobroma cacao HOM05D003806 ORTHO05D004346 4.2e-158 563.5 1383 46.9
QL04p061548 Quercus lobata HOM05D003806 ORTHO05D004346 1.8e-156 558.1 1383 49.3
Atru.chr8.989 Acer truncatum HOM05D003806 ORTHO05D004346 1.5e-152 545.0 1469 47.0
CiPaw.04G076200 Carya illinoinensis HOM05D003806 ORTHO05D004346 6.5e-151 539.7 1116 42.4
Eucgr.A00904 Eucalyptus grandis HOM05D003806 ORTHO05D004346 5.5e-150 536.6 1364 50.4
Cc05_g00050 Coffea canephora HOM05D003806 ORTHO05D004346 9.4e-150 535.8 1330 51.1
Ciclev10010914m.g Citrus clementina HOM05D003806 ORTHO05D004346 7.9e-149 532.7 1384 51.6
RcHm_v2.0_Chr2g0153621 Rosa chinensis HOM05D003806 ORTHO05D004346 1.8e-148 531.6 1378 50.9
COL.COLO4_33757 Corchorus olitorius HOM05D003806 ORTHO05D004346 2.3e-148 531.2 1387 45.1
PGR031G3264 Punica granatum HOM05D003806 ORTHO05D004346 2.3e-148 531.2 1331 47.6
Gohir.A07G081500 Gossypium hirsutum HOM05D003806 ORTHO05D004346 9.7e-147 525.8 1385 54.7
CiPaw.03G113300 Carya illinoinensis HOM05D003806 ORTHO05D004346 8.2e-146 522.7 1385 49.4
FAN05G0560 Fragaria x ananassa HOM05D003806 ORTHO05D004346 2.2e-143 514.6 1379 50.4
MSTRG.6602 Avicennia marina HOM05D003806 ORTHO05D004346 9.4e-142 509.2 1333 48.2
FAN02G2860 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.6e-141 508.4 1392 51.1
Actinidia28585 Actinidia chinensis HOM05D003806 ORTHO05D004346 1.0e-140 505.8 1336 47.9
Solyc07g043320.3 Solanum lycopersicum HOM05D003806 ORTHO05D004346 1.1e-137 495.7 1527 44.0
FAN09G2907 Fragaria x ananassa HOM05D003806 ORTHO05D004346 1.4e-137 495.4 1379 50.8
Gorai.001G093100 Gossypium raimondii HOM05D003806 ORTHO05D004346 6.5e-135 486.5 1385 51.6
Gohir.D07G087100 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.5e-134 484.6 1385 52.2
Nitab4.5_0002232g0030 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.4e-132 478.8 1331 44.9
Haze_13639 Corylus avellana HOM05D003806 ORTHO05D004346 1.8e-132 478.4 1381 44.2
Lj1A1039T31 Lonicera japonica HOM05D003806 ORTHO05D004346 4.1e-129 467.2 1385 46.4
ClCG07G010910 Citrullus lanatus HOM05D003806 ORTHO05D004346 5.4e-129 466.8 1583 40.9
Sed0016792 Sechium edule HOM05D003806 ORTHO05D004346 5.9e-128 463.4 1558 41.0
FvH4_6g39571 Fragaria vesca HOM05D003806 ORTHO05D004346 4.2e-126 457.2 1379 49.1
arahy.Tifrunner.gnm1.ann1.LI5V6E Arachis hypogaea HOM05D003806 ORTHO05D004346 2.7e-125 454.5 1386 46.6
Sabra06G0015000 Salix brachista HOM05D003806 ORTHO05D004346 2.7e-125 454.5 574 69.5
TAR626G1670 Trochodendron aralioides HOM05D003806 ORTHO05D004346 1.0e-124 452.6 1442 41.6
Rhsim12G0014400 Rhododendron simsii HOM05D003806 ORTHO05D004346 2.0e-123 448.4 1338 44.5
Nitab4.5_0000170g0440 Nicotiana tabacum HOM05D003806 ORTHO05D004346 1.2e-120 439.1 1332 45.0
Nn7g38253 Nelumbo nucifera HOM05D003806 ORTHO05D004346 1.3e-119 435.6 1574 44.0
MBI02_g35832_MAGBIO Magnolia biondii HOM05D003806 ORTHO05D004346 1.5e-118 432.2 1558 39.8
arahy.Tifrunner.gnm1.ann1.TP1CMR Arachis hypogaea HOM05D003806 ORTHO05D004346 2.8e-117 427.9 1386 47.0
VMungo1127G1373 Vigna mungo HOM05D003806 ORTHO05D004346 3.6e-117 427.6 1394 42.0
CANSAT64G1444 Cannabis sativa HOM05D003806 ORTHO05D004346 4.7e-117 427.2 1389 48.7
Gohir.A11G156200 Gossypium hirsutum HOM05D003806 ORTHO05D004346 1.8e-116 425.2 1348 48.4
FAN14G1588 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.0e-116 424.1 1392 47.8
FAN14G4911 Fragaria x ananassa HOM05D003806 ORTHO05D004346 4.0e-116 424.1 1392 47.8
Gorai.007G174000 Gossypium raimondii HOM05D003806 ORTHO05D004346 1.2e-115 422.5 1348 48.6
Gohir.D11G163300 Gossypium hirsutum HOM05D003806 ORTHO05D004346 2.6e-115 421.4 1348 47.8
PGSC0003DMG400011753 Solanum tuberosum HOM05D003806 ORTHO05D004346 9.2e-113 412.9 711 42.1
CsaV3_4G007390 Cucumis sativus L. HOM05D003806 ORTHO05D004346 1.0e-111 409.5 1588 38.8
Dinv09877 Davidia involucrata HOM05D003806 ORTHO05D004346 8.6e-111 406.4 619 45.1
Sopen07g022880 Solanum pennellii HOM05D003806 ORTHO05D004346 5.6e-110 403.7 1526 40.8
Peaxi162Scf00393g00413 Petunia axillaris HOM05D003806 ORTHO05D004346 9.5e-110 402.9 1334 49.0
Glyma.11G096400 Glycine max HOM05D003806 ORTHO05D004346 6.8e-108 396.7 1383 45.6
Glyma.12G022500 Glycine max HOM05D003806 ORTHO05D004346 6.8e-108 396.7 1383 41.7
vmacro08755 Vaccinium macrocarpon HOM05D003806 ORTHO05D004346 8.9e-108 396.4 1312 41.6
Lj3g0015803 Lotus japonicus HOM05D003806 ORTHO05D004346 6.4e-106 390.2 1386 42.9
Aqoxy1G01455 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 1.9e-102 378.6 1391 38.5
Phvul.011G024500 Phaseolus vulgaris HOM05D003806 ORTHO05D004346 3.6e-101 374.4 1398 42.4
GSVIVG01015817001 Vitis vinifera HOM05D003806 ORTHO05D004346 1.8e-100 372.1 685 40.0
PSO541G2929 Papaver somniferum HOM05D003806 ORTHO05D004346 5.4e-97 360.5 1662 33.2
Psat7g179080 Pisum sativum HOM05D003806 ORTHO05D004346 1.6e-96 359.0 1386 50.6
Duzib133G0409 Durio zibethinus HOM05D003806 ORTHO05D004346 1.7e-95 355.5 619 43.0
Lalb_Chr01g0001171 Lupinus albus HOM05D003806 ORTHO05D004346 2.3e-92 345.1 1384 44.1
Oeu003096.1 Olea europaea HOM05D003806 ORTHO05D004346 1.2e-91 342.8 1331 38.9
Sed0003037 Sechium edule HOM05D003806 ORTHO05D004346 3.8e-90 337.8 1566 40.8
Medtr4g076030 Medicago truncatula HOM05D003806 ORTHO05D004346 6.4e-90 337.0 1363 43.2
DCAR_009841 Daucus carota HOM05D003806 ORTHO05D004346 2.4e-89 335.1 1120 39.4
HanXRQChr17g0541141 Helianthus annuus HOM05D003806 ORTHO05D004346 3.3e-86 324.7 1327 44.6
THA.LOC104800972 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.3e-86 324.3 1399 47.7
ECA246G1737 Erigeron canadensis HOM05D003806 ORTHO05D004346 3.4e-83 314.7 1330 43.8
MELO3C016203.2 Cucumis melo HOM05D003806 ORTHO05D004346 4.8e-77 294.3 1041 49.6
MSTRG.14879 Avicennia marina HOM05D003806 ORTHO05D004346 6.2e-77 293.9 1332 36.7
Lalb_Chr19g0139591 Lupinus albus HOM05D003806 ORTHO05D004346 6.9e-76 290.4 766 42.6
PSO675G3405 Papaver somniferum HOM05D003806 ORTHO05D004346 9.0e-76 290.0 1738 32.5
Lsat_1_v5_gn_3_34740 Lactuca sativa HOM05D003806 ORTHO05D004346 1.3e-74 286.2 1382 36.9
Migut.M00098 Erythranthe guttata HOM05D003806 ORTHO05D004346 9.3e-73 280.0 1331 43.4
Ca_11242_v3 Cicer arietinum L. HOM05D003806 ORTHO05D004346 1.0e-71 276.6 1384 42.0
TAR624G1065 Trochodendron aralioides HOM05D003806 ORTHO05D004346 8.4e-66 256.9 324 54.6
THA.LOC104816049 Tarenaya hassleriana HOM05D003806 ORTHO05D004346 4.2e-65 254.6 1406 32.9
HanXRQChr06g0171661 Helianthus annuus HOM05D003806 ORTHO05D004346 1.1e-62 246.5 290 52.8
SGA_v2.0_scaffold73G24430 Striga asiatica HOM05D003806 ORTHO05D004346 1.6e-61 242.7 1343 39.4
HanXRQChr15g0470351 Helianthus annuus HOM05D003806 ORTHO05D004346 1.4e-57 229.6 303 49.5
CSS0042337 Camellia sinensis var. sinensis HOM05D003806 ORTHO05D004346 2.7e-56 225.3 315 50.2
HPP92_009459 Vanilla planifolia HOM05D003806 ORTHO05D004346 2.5e-54 218.8 618 29.8
Actinidia12514 Actinidia chinensis HOM05D003806 ORTHO05D004346 3.3e-54 218.4 334 44.6
Actinidia31596 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.6e-51 208.8 236 57.6
SalBow7G1206 Salvia bowleyana HOM05D003806 ORTHO05D004346 1.1e-46 193.4 1330 45.7
Peaxi162Scf00141g01119 Petunia axillaris HOM05D001948 ORTHO05D001873 4.8e-45 188.0 220 51.4
TPR.G21252 Trifolium pratense HOM05D003806 ORTHO05D004346 4.8e-45 188.0 1408 33.9
AT1G05320 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 8.2e-45 187.2 587 31.0
Carub.0001s0463 Capsella rubella HOM05D003806 ORTHO05D004346 9.1e-44 183.7 596 30.9
AUR62009108 Chenopodium quinoa HOM05D003806 ORTHO05D004346 9.1e-44 183.7 417 38.8
Aa31LG5G4290 Aethionema arabicum HOM05D003806 ORTHO05D004346 1.2e-43 183.3 401 36.9
Sp4g14610 Schrenkiella parvula HOM05D003806 ORTHO05D004346 1.5e-43 183.0 289 46.4
CDE05G0051 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 7.7e-43 180.6 479 32.4
EL10Ac2g03814 Beta vulgaris HOM05D003806 ORTHO05D004346 2.2e-42 179.1 416 35.6
DCAR_013337 Daucus carota HOM05D003806 ORTHO05D004346 3.2e-41 175.3 206 53.4
Aqoxy7G02954 Aquilegia oxysepala HOM05D003806 ORTHO05D004346 2.7e-40 172.2 499 33.9
CARHR126030 Cardamine hirsuta HOM05D003806 ORTHO05D004346 3.6e-40 171.8 619 33.1
SGA_v2.0_scaffold181G39737 Striga asiatica HOM05D003806 ORTHO05D004346 1.4e-39 169.9 321 42.4
AUR62043987 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.0e-39 168.7 442 36.2
CDE02G3965 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.1e-38 166.8 479 30.7
AUR62020563 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-36 159.5 407 38.6
AUR62043599 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-36 159.5 407 38.6
Sp1g04190 Schrenkiella parvula HOM05D003806 ORTHO05D004346 3.1e-36 158.7 214 48.6
Hund19432 Selenicereus undatus HOM05D003806 ORTHO05D004346 7.7e-35 154.1 411 38.7
AUR62020559 Chenopodium quinoa HOM05D003806 ORTHO05D004346 5.0e-34 151.4 407 38.1
BcaC02g11341 Brassica carinata HOM05D003806 ORTHO05D001704 1.1e-33 150.2 606 36.0
unitig_85.g27313 Utricularia gibba HOM05D003806 ORTHO05D004346 3.6e-32 145.2 273 38.5
AL4G27610 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 1.4e-31 143.3 613 31.5
Ah.11g044370 Amaranthus hybridus HOM05D003806 ORTHO05D004346 3.9e-31 141.7 172 52.3
Carub.0004s1356 Capsella rubella HOM05D003806 ORTHO05D004346 5.2e-31 141.4 176 55.7
Thhalv10016148m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 6.7e-31 141.0 342 38.3
Sc23g0004300 Simmondsia chinensis HOM05D003806 ORTHO05D004346 6.7e-31 141.0 250 44.8
C04p17390 Brassica napus HOM05D003806 ORTHO05D004346 8.8e-31 140.6 377 32.9
BraA05t20242Z Brassica rapa HOM05D003806 ORTHO05D004346 8.8e-31 140.6 185 52.4
AL1G15120 Arabidopsis lyrata HOM05D003806 ORTHO05D004346 9.7e-30 137.1 235 42.6
BolC4t23290H Brassica oleracea HOM05D008171 ORTHO05D006541 9.7e-30 137.1 185 52.4
BcaC01g05916 Brassica carinata HOM05D003806 ORTHO05D004346 3.7e-29 135.2 202 50.5
Actinidia12513 Actinidia chinensis HOM05D003806 ORTHO05D004346 2.4e-28 132.5 183 50.8
A05p13020 Brassica napus HOM05D003806 ORTHO05D004346 3.1e-28 132.1 174 53.4
Oeu048050.1 Olea europaea HOM05D003806 ORTHO05D004346 1.6e-27 129.8 141 53.9
Sabra06G0014900 Salix brachista HOM05D003806 ORTHO05D004346 5.9e-27 127.9 296 45.6
BolC5t29142H Brassica oleracea HOM05D003806 ORTHO05D004346 2.2e-26 125.9 601 26.1
Oeu021135.1 Olea europaea HOM05D003806 ORTHO05D004346 2.9e-26 125.6 286 57.3
AT2G32240 Arabidopsis thaliana HOM05D003806 ORTHO05D004346 2.1e-24 119.4 612 31.2
A03p18080 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-24 118.6 174 51.7
A10p04030 Brassica napus HOM05D003806 ORTHO05D004346 3.6e-24 118.6 388 31.2
ATR0763G047 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.8e-23 116.3 1166 33.1
SEGI_00522 Sequoiadendron giganteum HOM05D003806 ORTHO05D004346 2.3e-23 115.9 317 31.2
unitig_8.g4605 Utricularia gibba HOM05D001005 ORTHO05D000836 1.5e-22 113.2 551 25.0
C05p03650 Brassica napus HOM05D003806 ORTHO05D004346 3.3e-22 112.1 597 24.6
BraA10t42674Z Brassica rapa HOM05D003806 ORTHO05D004346 2.2e-21 109.4 285 33.7
MD09G1138300 Malus domestica HOM05D003806 ORTHO05D004346 4.1e-20 105.1 102 57.8
C08p51770 Brassica napus HOM05D003806 ORTHO05D004346 1.2e-19 103.6 284 38.7
Sabra06G0015100 Salix brachista HOM05D003806 ORTHO05D004346 3.5e-19 102.1 89 65.2
CARHR004810 Cardamine hirsuta HOM05D003806 ORTHO05D004346 5.9e-19 101.3 206 38.8
C03p21110 Brassica napus HOM05D003806 ORTHO05D004346 1.0e-18 100.5 202 42.1
AUR62044057 Chenopodium quinoa HOM05D003806 ORTHO05D004346 3.2e-17 95.5 267 32.6
AUR62044188 Chenopodium quinoa HOM05D003806 ORTHO05D004346 7.2e-17 94.4 267 32.2
BolC8t52706H Brassica oleracea HOM05D003806 ORTHO05D004346 4.0e-15 88.6 268 36.9
BolC3t14493H Brassica oleracea HOM05D003806 ORTHO05D004346 8.8e-15 87.4 308 36.7
CANSAT64G1938 Cannabis sativa HOM05D003806 ORTHO05D004346 8.8e-15 87.4 270 36.7
Os04g0614650 Oryza sativa ssp. japonica HOM05D003806 ORTHO05D004346 8.8e-15 87.4 365 25.5
unitig_85.g27314 Utricularia gibba HOM05D003806 ORTHO05D004346 2.6e-14 85.9 560 27.5
BraA03t11067Z Brassica rapa HOM05D003806 ORTHO05D004346 4.4e-14 85.1 319 40.8
Actinidia31597 Actinidia chinensis HOM05D003806 ORTHO05D004346 7.5e-14 84.3 154 53.2
BraA09t42077Z Brassica rapa HOM05D003806 ORTHO05D004346 8.3e-13 80.9 435 29.4
A09p67490 Brassica napus HOM05D003806 ORTHO05D004346 7.0e-12 77.8 435 29.2
Thhalv10006865m.g Eutrema salsugineum HOM05D003806 ORTHO05D004346 9.1e-12 77.4 575 25.2
SEGI_03911 Sequoiadendron giganteum HOM05D003806 ORTHO05D002919 2.3e-10 72.8 211 28.4
Peaxi162Scf00271g00618 Petunia axillaris HOM05D006663 ORTHO05D008269 4.2e-09 68.6 108 46.3
ATR0763G279 Amborella trichopoda HOM05D003806 ORTHO05D004346 1.2e-08 67.0 353 27.5
CDE06G0039 Ceratophyllum demersum HOM05D003806 ORTHO05D004346 1.2e-08 67.0 79 50.6
Zm00001eb430870 Zea mays HOM05D003806 ORTHO05D004346 3.6e-08 65.5 312 27.9
Dinv29619 Davidia involucrata HOM05D003806 ORTHO05D004346 6.1e-08 64.7 51 68.6
Zm00001eb070840 Zea mays HOM05D003806 ORTHO05D004346 8.0e-08 64.3 86 43.0
BcaC07g42136 Brassica carinata HOM05D003806 ORTHO05D004346 1.4e-07 63.5 309 33.0
AUR62043600 Chenopodium quinoa HOM05D003806 ORTHO05D004346 1.8e-07 63.2 180 31.7
Nn2g14903 Nelumbo nucifera HOM05D002721 ORTHO05D002919 2.3e-07 62.8 380 23.4
unitig_699.g19629 Utricularia gibba HOM05D003806 ORTHO05D004346 1.2e-06 60.5 89 37.1
Nn7g36612 Nelumbo nucifera HOM05D002721 ORTHO05D002919 5.7e-06 58.2 374 21.4


User provided reference genes

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