Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.0e-212 743.0 352 100.0
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.9e-195 685.6 355 90.7
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 5.9e-192 674.1 351 88.9
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.0e-188 663.3 352 86.6
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.8e-188 662.5 352 85.8
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 1.3e-183 646.4 352 83.8
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 3.8e-183 644.8 352 84.4
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 3.8e-183 644.8 352 83.8
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 7.2e-182 640.6 352 82.4
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 6.1e-181 637.5 353 83.3
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 1.0e-180 636.7 383 82.2
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 1.8e-180 636.0 361 82.5
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.1e-180 634.4 350 83.4
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 1.5e-179 632.9 350 82.6
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 3.3e-179 631.7 352 84.1
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 7.4e-179 630.6 352 82.1
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 7.4e-179 630.6 352 82.4
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 3.7e-178 628.2 352 82.1
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.7e-178 628.2 350 80.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 4.8e-178 627.9 352 81.0
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 1.4e-177 626.3 339 84.4
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 1.8e-177 625.9 352 82.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 3.1e-177 625.2 350 81.7
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 7.0e-177 624.0 352 81.2
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 7.7e-176 620.5 339 84.1
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.2e-175 619.0 352 81.5
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 6.5e-175 617.5 350 80.3
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 5.5e-174 614.4 350 80.6
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 5.5e-174 614.4 350 80.0
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 5.5e-174 614.4 350 80.0
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 5.5e-174 614.4 352 79.3
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 2.1e-173 612.5 350 79.7
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 4.0e-172 608.2 352 79.5
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 6.7e-172 607.4 352 79.8
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.1e-171 606.7 352 79.8
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.0e-171 605.9 352 79.8
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 4.4e-171 604.7 351 79.8
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 7.4e-171 604.0 352 79.5
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.8e-170 602.1 354 79.7
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 2.8e-170 602.1 352 79.0
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 1.1e-169 600.1 352 79.3
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.8e-169 599.4 350 77.7
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 1.8e-169 599.4 352 78.4
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.1e-169 597.0 352 77.8
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 1.2e-168 596.7 352 79.0
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 2.0e-168 595.9 353 79.3
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.0e-168 595.9 352 77.6
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 3.5e-168 595.1 319 84.6
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 4.5e-168 594.7 352 77.8
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.0e-167 593.6 352 77.8
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 1.0e-167 593.6 374 75.1
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 5.0e-167 591.3 352 77.0
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 8.5e-167 590.5 352 76.4
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 1.5e-166 589.7 352 77.0
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 2.5e-166 589.0 352 77.3
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 2.5e-166 589.0 352 77.3
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 2.5e-166 589.0 352 77.3
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 4.2e-166 588.2 352 77.3
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 5.5e-166 587.8 352 77.3
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 3.6e-165 585.1 352 77.3
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.4e-164 583.2 352 75.9
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 2.3e-164 582.4 351 77.8
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 3.0e-164 582.0 338 78.4
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 3.0e-164 582.0 352 76.4
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 4.0e-164 581.6 352 76.7
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 1.5e-163 579.7 352 77.0
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 2.8e-162 575.5 355 76.6
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 4.8e-162 574.7 352 75.3
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 6.3e-162 574.3 339 76.4
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 8.3e-162 573.9 319 81.8
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 1.8e-161 572.8 352 74.1
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 2.4e-161 572.4 338 76.3
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 3.1e-161 572.0 347 74.9
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.2e-160 570.1 358 74.6
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 1.2e-160 570.1 350 74.6
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 7.7e-160 567.4 352 75.0
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 1.3e-159 566.6 351 74.1
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 1.7e-159 566.2 352 75.0
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 8.5e-159 563.9 340 77.1
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.5e-158 563.1 352 73.9
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 2.5e-158 562.4 352 74.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 5.5e-158 561.2 339 76.1
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 2.7e-157 558.9 352 73.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.7e-157 558.1 352 74.4
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.8e-156 556.2 352 73.3
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.8e-156 556.2 352 73.3
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.0e-156 555.1 352 73.9
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.7e-154 549.7 292 85.6
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 2.7e-152 542.3 352 70.2
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 2.9e-151 538.9 408 64.2
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 8.6e-151 537.3 338 74.3
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 4.2e-150 535.0 352 71.9
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 4.2e-150 535.0 319 77.4
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 2.3e-148 529.3 309 78.3
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 2.3e-148 529.3 309 78.3
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 6.8e-148 527.7 295 81.4
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 2.4e-145 519.2 346 69.9
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 1.3e-143 513.5 319 73.0
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.9e-142 509.6 338 66.0
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 4.9e-138 495.0 319 73.0
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 1.4e-137 493.4 353 63.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 1.7e-135 486.5 323 71.5
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 3.0e-135 485.7 301 75.1
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 2.8e-133 479.2 353 62.3
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 3.6e-133 478.8 296 73.6
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 2.9e-130 469.2 396 58.3
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 1.9e-129 466.5 269 78.4
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 2.4e-129 466.1 255 82.4
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 7.1e-129 464.5 353 60.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 3.5e-120 435.6 263 76.4
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 7.3e-118 427.9 353 60.9
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 2.7e-112 409.5 223 84.3
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 5.3e-100 368.6 201 82.1
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 3.5e-96 355.9 180 89.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 1.3e-87 327.4 203 74.4
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.3e-86 322.8 353 43.3
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 5.7e-86 322.0 358 42.7
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.2e-83 314.3 232 62.5
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 8.4e-82 308.1 212 68.4
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 1.9e-81 307.0 158 86.1
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 5.3e-76 288.9 355 40.8
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 2.8e-69 266.5 199 63.8
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.2e-59 234.6 144 72.2
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 3.8e-58 229.6 126 81.7
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 4.4e-54 216.1 364 32.1
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 8.0e-48 195.3 126 74.6
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 7.5e-46 188.7 108 78.7
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 3.8e-42 176.4 87 93.1
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.1e-41 174.9 129 64.3
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 1.0e-39 168.3 226 42.5
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 4.0e-31 139.8 332 28.6
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 5.0e-26 122.9 72 72.2
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.5e-25 120.6 81 60.5
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 3.3e-25 120.2 76 73.7
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-24 118.2 69 75.4
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.7e-24 116.3 70 72.9
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 3.7e-21 106.7 209 31.1
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 4.7e-16 89.7 373 23.3
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 8.1e-16 89.0 63 63.5
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.1e-15 87.0 146 37.0
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.6e-14 84.0 54 74.1
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 2.6e-14 84.0 60 58.3
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.8e-14 82.8 44 79.5
AUR62018933 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.0e-10 72.0 87 43.7
AUR62038170 Chenopodium quinoa HOM05D000030 ORTHO05D000031 1.7e-10 71.2 42 69.0
Ca_09079_v3 Cicer arietinum L. HOM05D000526 ORTHO05D000430 1.5e-09 68.2 208 27.9
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 7.3e-09 65.9 152 31.6
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 3.6e-08 63.5 65 43.1
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 6.2e-08 62.8 41 61.0
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 6.2e-08 62.8 217 25.8
AUR62009045 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.8e-07 61.2 163 22.1
AUR62020617 Chenopodium quinoa HOM05D000347 ORTHO05D001997 1.8e-07 61.2 163 22.1
Lj9A311G56 Lonicera japonica HOM05D000347 ORTHO05D001997 1.8e-07 61.2 163 23.3
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 3.1e-07 60.5 68 41.2
ClCG03G015580 Citrullus lanatus HOM05D002302 ORTHO05D002728 4.0e-07 60.1 292 22.9
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 4.0e-07 60.1 44 63.6
PGR102G2098 Punica granatum HOM05D003753 ORTHO05D005081 5.2e-07 59.7 144 30.6
BcaC09g52223 Brassica carinata HOM05D002302 ORTHO05D002728 6.8e-07 59.3 302 19.9
C01p09730 Brassica napus HOM05D002302 ORTHO05D002728 6.8e-07 59.3 302 19.9
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 6.8e-07 59.3 180 20.0
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 6.8e-07 59.3 133 27.8
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 6.8e-07 59.3 47 55.3
Oeu000196.1 Olea europaea HOM05D000347 ORTHO05D001997 8.9e-07 58.9 180 21.7
A07p01270 Brassica napus HOM05D002302 ORTHO05D002728 1.2e-06 58.5 281 21.7
BcaB03g16740 Brassica carinata HOM05D002302 ORTHO05D002728 2.0e-06 57.8 281 21.4
Migut.B00663 Erythranthe guttata HOM05D000347 ORTHO05D001997 2.0e-06 57.8 102 29.4
arahy.Tifrunner.gnm1.ann1.YQX6Q2 Arachis hypogaea HOM05D000347 ORTHO05D001997 3.4e-06 57.0 168 24.4
BcaC06g36592 Brassica carinata HOM05D002302 ORTHO05D002728 3.4e-06 57.0 281 21.4
BraA07t27917Z Brassica rapa HOM05D002302 ORTHO05D002728 3.4e-06 57.0 281 21.4
Lj9A312G29 Lonicera japonica HOM05D000347 ORTHO05D001997 3.4e-06 57.0 102 29.4
CSS0033183 Camellia sinensis var. sinensis HOM05D003753 ORTHO05D005081 4.4e-06 56.6 140 27.1
ATR0304G001 Amborella trichopoda HOM05D000347 ORTHO05D038333 5.8e-06 56.2 152 25.0
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 5.8e-06 56.2 215 23.3
C07p02560 Brassica napus HOM05D002302 ORTHO05D002728 7.6e-06 55.8 281 21.4
BolC7t40654H Brassica oleracea HOM05D002302 ORTHO05D002728 7.6e-06 55.8 281 21.4
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 7.6e-06 55.8 129 26.4
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 7.6e-06 55.8 129 26.4
Dinv42315 Davidia involucrata HOM05D003753 ORTHO05D005081 9.9e-06 55.5 151 27.8
ECA233G5892 Erigeron canadensis HOM05D000526 ORTHO05D000956 9.9e-06 55.5 189 22.8
Glyma.09G063100 Glycine max HOM05D002302 ORTHO05D002728 9.9e-06 55.5 315 19.4
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 9.9e-06 55.5 177 20.9


User provided reference genes

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