Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G232200 Populus trichocarpa HOM05D001587 ORTHO05D008791 3.1e-204 714.9 363 100.0
Sabra05G0179100 Salix brachista HOM05D001587 ORTHO05D002654 3.7e-157 558.5 292 96.6
Manes.05G154300 Manihot esculenta HOM05D001587 ORTHO05D008791 4.2e-145 518.5 363 76.0
Duzib041G0293 Durio zibethinus HOM05D001587 ORTHO05D008791 4.5e-139 498.4 363 70.5
COL.COLO4_26234 Corchorus olitorius HOM05D001587 ORTHO05D008791 2.8e-136 489.2 363 70.8
Gohir.D06G002700 Gossypium hirsutum HOM05D001587 ORTHO05D008791 8.0e-136 487.6 360 70.6
Gorai.010G007600 Gossypium raimondii HOM05D001587 ORTHO05D008791 1.0e-135 487.3 360 70.6
GSVIVG01009782001 Vitis vinifera HOM05D001587 ORTHO05D008791 1.8e-135 486.5 363 69.7
Atru.chr13.396 Acer truncatum HOM05D001587 ORTHO05D008791 4.0e-135 485.3 370 70.5
Thecc.08G034500 Theobroma cacao HOM05D001587 ORTHO05D008791 9.8e-134 480.7 362 70.4
Ciclev10001571m.g Citrus clementina HOM05D001587 ORTHO05D008791 2.9e-133 479.2 368 69.8
QL02p010191 Quercus lobata HOM05D001587 ORTHO05D008791 9.2e-132 474.2 339 74.0
Cpa.g.sc99.13 Carica papaya HOM05D001587 ORTHO05D008791 1.6e-131 473.4 357 68.9
TWI56G0852 Tripterygium wilfordii HOM05D001587 ORTHO05D008791 6.0e-131 471.5 359 68.2
FvH4_2g39240 Fragaria vesca HOM05D001587 ORTHO05D008791 1.3e-130 470.3 359 69.9
CANSAT35G0963 Cannabis sativa HOM05D001587 ORTHO05D008791 1.1e-129 467.2 327 72.8
MD15G1021600 Malus domestica HOM05D001587 ORTHO05D008791 2.5e-129 466.1 366 68.6
Hma1.2p1_1194F.1_g265710 Hydrangea macrophylla HOM05D001587 ORTHO05D008791 5.6e-129 464.9 330 72.7
CsaV3_2G029060 Cucumis sativus L. HOM05D001587 ORTHO05D008791 6.2e-128 461.5 363 67.2
Nitab4.5_0001861g0110 Nicotiana tabacum HOM05D001587 ORTHO05D008791 6.2e-128 461.5 366 65.8
Sed0025916 Sechium edule HOM05D001587 ORTHO05D008791 6.2e-128 461.5 354 69.2
RcHm_v2.0_Chr6g0301771 Rosa chinensis HOM05D001587 ORTHO05D008791 8.0e-128 461.1 355 70.1
MELO3C010971.2 Cucumis melo HOM05D001587 ORTHO05D008791 1.1e-127 460.7 363 66.7
Lj4A33T83 Lonicera japonica HOM05D001587 ORTHO05D008791 1.8e-127 459.9 305 77.0
Eucgr.F01602 Eucalyptus grandis HOM05D001587 ORTHO05D008791 4.0e-127 458.8 314 73.6
Prupe.1G373400 Prunus persica HOM05D001587 ORTHO05D008791 5.2e-127 458.4 367 66.2
CSS0005575 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 1.2e-126 457.2 301 76.4
Cc10_g02390 Coffea canephora HOM05D001587 ORTHO05D008791 1.2e-126 457.2 315 72.4
BcaC08g42893 Brassica carinata HOM05D001587 ORTHO05D008791 1.5e-126 456.8 357 65.8
C06p01170 Brassica napus HOM05D001587 ORTHO05D008791 1.5e-126 456.8 357 65.8
BolC6t35253H Brassica oleracea HOM05D001587 ORTHO05D008791 2.6e-126 456.1 357 65.8
HanXRQChr04g0099151 Helianthus annuus HOM05D001587 ORTHO05D008791 2.6e-126 456.1 303 76.2
CSS0021558 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D008791 4.4e-126 455.3 301 76.1
Glyma.06G029000 Glycine max HOM05D001587 ORTHO05D008791 4.4e-126 455.3 362 66.9
ECA247G3480 Erigeron canadensis HOM05D001587 ORTHO05D008791 9.8e-126 454.1 306 74.5
Thhalv10011622m.g Eutrema salsugineum HOM05D001587 ORTHO05D008791 1.3e-125 453.8 357 66.9
Phvul.009G060300 Phaseolus vulgaris HOM05D001587 ORTHO05D008791 1.3e-125 453.8 362 66.0
FAN27G1828 Fragaria x ananassa HOM05D001587 ORTHO05D008791 1.7e-125 453.4 379 65.4
BraA10t42958Z Brassica rapa HOM05D001587 ORTHO05D008791 2.2e-125 453.0 332 68.7
A10p07100 Brassica napus HOM05D001587 ORTHO05D008791 2.9e-125 452.6 332 69.0
Lsat_1_v5_gn_1_17201 Lactuca sativa HOM05D001587 ORTHO05D008791 2.9e-125 452.6 365 64.9
THA.LOC104813319 Tarenaya hassleriana HOM05D001587 ORTHO05D008791 6.4e-125 451.4 292 77.4
Lj1g0011689 Lotus japonicus HOM05D001587 ORTHO05D008791 1.1e-124 450.7 329 71.1
Nn5g29720 Nelumbo nucifera HOM05D001587 ORTHO05D008791 1.1e-124 450.7 367 63.8
Peaxi162Scf00189g00920 Petunia axillaris HOM05D001587 ORTHO05D008791 1.9e-124 449.9 291 75.9
PGSC0003DMG400003752 Solanum tuberosum HOM05D001587 ORTHO05D008791 1.9e-124 449.9 372 64.5
AL1G52680 Arabidopsis lyrata HOM05D001587 ORTHO05D008791 3.2e-124 449.1 353 66.0
Carub.0001s3551 Capsella rubella HOM05D001587 ORTHO05D008791 3.2e-124 449.1 310 71.0
TPR.G12317 Trifolium pratense HOM05D001587 ORTHO05D008791 3.2e-124 449.1 361 65.4
CARHR036210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 4.1e-124 448.7 353 65.7
MBI11_g07616_MAGBIO Magnolia biondii HOM05D001587 ORTHO05D008791 4.1e-124 448.7 309 71.2
Sopen04g034390 Solanum pennellii HOM05D001587 ORTHO05D008791 4.1e-124 448.7 369 63.7
AT1G45110 Arabidopsis thaliana HOM05D001587 ORTHO05D008791 7.0e-124 448.0 348 66.4
FAN15G0115 Fragaria x ananassa HOM05D001587 ORTHO05D008791 9.2e-124 447.6 395 62.5
Lalb_Chr08g0245991 Lupinus albus HOM05D001587 ORTHO05D008791 1.2e-123 447.2 313 72.8
CAN.G851.40 Capsicum annuum HOM05D001587 ORTHO05D008791 2.7e-123 446.0 306 72.5
Solyc04g080800.4 Solanum lycopersicum HOM05D001587 ORTHO05D008791 2.7e-123 446.0 369 64.0
BcaB07g33894 Brassica carinata HOM05D001587 ORTHO05D008791 3.0e-122 442.6 357 64.4
Nitab4.5_0005779g0030 Nicotiana tabacum HOM05D001587 ORTHO05D008791 3.9e-122 442.2 355 66.5
Sp1g33880 Schrenkiella parvula HOM05D001587 ORTHO05D008791 1.1e-121 440.7 360 64.7
Sc15g0007180 Simmondsia chinensis HOM05D001587 ORTHO05D008791 1.5e-121 440.3 370 63.0
PSO675G8960 Papaver somniferum HOM05D001587 ORTHO05D008791 1.9e-121 439.9 365 64.4
Hund17199 Selenicereus undatus HOM05D001587 ORTHO05D008791 1.9e-121 439.9 363 64.7
Aa31sc185G120 Aethionema arabicum HOM05D001587 ORTHO05D008791 5.6e-121 438.3 397 61.2
MSTRG.1247 Avicennia marina HOM05D001587 ORTHO05D008791 1.2e-120 437.2 296 75.3
PSO541G2666 Papaver somniferum HOM05D001587 ORTHO05D008791 1.6e-120 436.8 363 63.1
Aqoxy6G01203 Aquilegia oxysepala HOM05D001587 ORTHO05D008791 2.8e-120 436.0 372 64.2
AUR62034528 Chenopodium quinoa HOM05D001587 ORTHO05D008791 8.1e-120 434.5 340 67.4
Migut.C00772 Erythranthe guttata HOM05D001587 ORTHO05D008791 8.1e-120 434.5 315 70.2
EL10Ac1g00602 Beta vulgaris HOM05D001587 ORTHO05D008791 1.8e-119 433.3 366 63.9
Gohir.A06G007600 Gossypium hirsutum HOM05D001587 ORTHO05D008791 2.3e-119 433.0 348 66.1
Ah.05g180890 Amaranthus hybridus HOM05D001587 ORTHO05D008791 1.2e-118 430.6 348 63.5
Medtr3g112310 Medicago truncatula HOM05D001587 ORTHO05D008791 3.2e-116 422.5 341 66.0
CDE04G1582 Ceratophyllum demersum HOM05D001587 ORTHO05D008791 1.2e-115 420.6 294 69.7
Rhsim07G0243600 Rhododendron simsii HOM05D001587 ORTHO05D008791 2.7e-115 419.5 330 66.4
FAN20G2929 Fragaria x ananassa HOM05D001587 ORTHO05D008791 3.3e-113 412.5 301 71.1
VMungo1309G0203 Vigna mungo HOM05D001587 ORTHO05D008791 9.5e-113 411.0 339 64.9
CiPaw.07G156300 Carya illinoinensis HOM05D001587 ORTHO05D008791 3.6e-112 409.1 268 78.0
Os10g0414500 Oryza sativa ssp. japonica HOM05D001587 ORTHO05D008791 6.8e-111 404.8 335 63.0
HPP92_024861 Vanilla planifolia HOM05D001587 ORTHO05D008791 8.9e-111 404.4 322 63.7
Zm00001eb048090 Zea mays HOM05D001587 ORTHO05D008791 1.3e-109 400.6 298 68.1
unitig_578.g16081 Utricularia gibba HOM05D001587 ORTHO05D008791 1.1e-105 387.5 291 71.5
arahy.Tifrunner.gnm1.ann1.R2LLHR Arachis hypogaea HOM05D001587 ORTHO05D008791 2.8e-104 382.9 440 50.2
Haze_22561 Corylus avellana HOM05D001587 ORTHO05D008791 8.1e-104 381.3 419 55.6
TAR628G1547 Trochodendron aralioides HOM05D001587 ORTHO05D008791 2.4e-103 379.8 369 58.8
ClCG08G014710 Citrullus lanatus HOM05D001587 ORTHO05D008791 5.8e-102 375.2 361 58.2
arahy.Tifrunner.gnm1.ann1.F22IQH Arachis hypogaea HOM05D001587 ORTHO05D008791 1.4e-100 370.5 456 48.0
ATR0665G135 Amborella trichopoda HOM05D001587 ORTHO05D008791 4.6e-99 365.5 265 67.5
Dinv39461 Davidia involucrata HOM05D001587 ORTHO05D008791 9.6e-97 357.8 234 78.6
vmacro04308 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 3.6e-96 355.9 580 40.9
Actinidia15364 Actinidia chinensis HOM05D001587 ORTHO05D002654 7.6e-94 348.2 282 64.9
Psat0s471g0160 Pisum sativum HOM05D001587 ORTHO05D008791 4.9e-93 345.5 236 72.0
Ca_15490_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 2.4e-92 343.2 287 62.7
Mapoly0042s0010 Marchantia polymorpha HOM05D001587 ORTHO05D008791 2.3e-90 336.7 296 57.8
SalBow7G1285 Salvia bowleyana HOM05D001587 ORTHO05D008791 2.5e-89 333.2 251 69.7
AUR62014470 Chenopodium quinoa HOM05D001587 ORTHO05D008791 4.3e-89 332.4 232 70.7
SGA_v2.0_scaffold11G05847 Striga asiatica HOM05D001587 ORTHO05D008791 1.1e-87 327.8 213 77.0
Pp3c23_9730 Physcomitrium patens HOM05D001587 ORTHO05D008791 8.4e-85 318.2 292 55.1
SMO169G0295 Selaginella moellendorffii HOM05D001587 ORTHO05D008791 1.9e-84 317.0 316 53.2
AagrBONN_evm.TU.Sc2ySwM_344.3744 Anthoceros agrestis HOM05D001587 ORTHO05D008791 6.0e-83 312.0 287 54.7
MD08G1024000 Malus domestica HOM05D001587 ORTHO05D008791 1.5e-81 307.4 390 51.3
vmacro07875 Vaccinium macrocarpon HOM05D001587 ORTHO05D008791 8.4e-77 291.6 184 78.3
Ca_29810_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 7.4e-65 251.9 211 64.0
AagrBONN_evm.TU.Sc2ySwM_344.3737 Anthoceros agrestis HOM05D001587 ORTHO05D008791 1.4e-58 231.1 190 59.5
Manes.18G021412 Manihot esculenta HOM05D001587 ORTHO05D008791 1.8e-58 230.7 359 45.1
Glyma.04G029000 Glycine max HOM05D001587 ORTHO05D008791 2.6e-57 226.9 142 77.5
Psat3g187600 Pisum sativum HOM05D001587 ORTHO05D008791 1.8e-55 220.7 170 64.1
Dinv31791 Davidia involucrata HOM05D001587 ORTHO05D002654 2.4e-55 220.3 197 61.4
Cre13.g572000 Chlamydomonas reinhardtii HOM05D001587 ORTHO05D008791 3.8e-53 213.0 311 41.2
MCO14G527 Micromonas commoda HOM05D001587 ORTHO05D008791 1.4e-47 194.5 193 50.8
Psat3g187640 Pisum sativum HOM05D001587 ORTHO05D008791 1.4e-47 194.5 202 54.5
PRCOL_00005810 Prasinoderma coloniale HOM05D001587 ORTHO05D008791 9.1e-47 191.8 300 39.0
Psat5g097560 Pisum sativum HOM05D000922 ORTHO05D008791 2.2e-37 160.6 216 43.5
Hma1.2p1_1194F.1_g265720 Hydrangea macrophylla HOM05D001587 ORTHO05D014867 2.8e-32 143.7 101 71.3
Psat5g097640 Pisum sativum HOM05D000922 ORTHO05D001851 1.4e-31 141.4 214 40.2
AL1G52690 Arabidopsis lyrata HOM05D001587 ORTHO05D014867 3.8e-29 133.3 104 61.5
SEGI_08976 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 2.3e-26 124.0 77 76.6
SEGI_23158 Sequoiadendron giganteum HOM05D001587 ORTHO05D008791 5.2e-26 122.9 75 77.3
CARHR174630 Cardamine hirsuta HOM05D001587 ORTHO05D014867 3.7e-24 116.7 92 63.0
Potri.002G030701 Populus trichocarpa HOM05D001587 ORTHO05D014867 1.4e-23 114.8 133 53.4
Ca_02074_v3 Cicer arietinum L. HOM05D001587 ORTHO05D008791 5.4e-23 112.8 131 51.1
CARHR293210 Cardamine hirsuta HOM05D001587 ORTHO05D008791 7.5e-17 92.4 64 71.9
SEGI_08644 Sequoiadendron giganteum HOM05D001587 ORTHO05D014867 4.9e-16 89.7 77 54.5
Psat4g126360 Pisum sativum HOM05D001587 ORTHO05D037360 3.5e-14 83.6 47 80.9
CSS0001111 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 58 67.2
CSS0020626 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 58 67.2
CSS0029664 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 58 67.2
CSS0031048 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 58 67.2
CSS0048350 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 3.9e-13 80.1 58 67.2
CSS0016398 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.0e-13 79.7 58 67.2
CSS0046073 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 5.0e-13 79.7 58 67.2
CSS0002416 Camellia sinensis var. sinensis HOM05D001587 ORTHO05D014867 7.3e-12 75.9 58 65.5
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 7.3e-12 75.9 150 31.3
Sabra02G0024500 Salix brachista HOM05D001587 ORTHO05D037360 3.4e-09 67.0 38 81.6


User provided reference genes

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