Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 1.9e-81 305.8 158 100.0
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 6.9e-76 287.3 158 93.0
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 3.3e-70 268.5 157 89.2
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.0e-66 256.9 158 81.6
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 1.0e-66 256.9 158 83.5
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 1.0e-66 256.9 158 82.9
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 1.3e-66 256.5 158 82.9
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.7e-66 256.1 158 83.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 2.2e-66 255.8 158 82.3
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 5.0e-66 254.6 158 82.3
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 1.4e-65 253.1 158 82.3
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.5e-65 252.3 158 81.0
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 3.2e-65 251.9 158 82.3
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 4.2e-65 251.5 158 82.9
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 4.2e-65 251.5 157 79.6
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 7.2e-65 250.8 158 81.0
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 2.1e-64 249.2 223 64.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 3.6e-64 248.4 158 80.4
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 6.1e-64 247.7 156 80.8
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 6.7e-63 244.2 155 82.6
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 1.5e-62 243.0 156 79.5
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 3.3e-62 241.9 156 80.1
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 2.2e-61 239.2 152 79.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 2.2e-61 239.2 158 77.2
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 8.2e-61 237.3 158 77.2
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 1.1e-60 236.9 152 78.9
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 1.1e-60 236.9 158 77.2
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.4e-60 236.5 158 78.5
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.8e-60 236.1 159 79.9
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 2.4e-60 235.7 144 83.3
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.2e-59 233.4 159 78.6
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-59 233.4 159 78.6
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 1.2e-59 233.4 159 78.0
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 1.6e-59 233.0 156 78.2
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.0e-59 232.6 158 76.6
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 4.5e-59 231.5 147 80.3
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.3e-58 229.9 173 73.4
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 1.7e-58 229.6 159 78.0
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 3.8e-58 228.4 156 78.2
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 9.4e-57 223.8 157 77.7
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.6e-56 221.9 157 75.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 6.1e-56 221.1 155 72.9
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 1.0e-55 220.3 147 77.6
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.3e-55 219.2 153 76.5
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 3.0e-55 218.8 157 74.5
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 6.7e-55 217.6 157 73.2
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.5e-54 216.5 155 74.8
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 2.6e-54 215.7 155 74.2
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 4.4e-54 214.9 155 72.3
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 5.7e-54 214.5 155 74.2
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.2e-53 212.6 153 72.5
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 3.7e-53 211.8 157 70.7
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 4.8e-53 211.5 155 71.0
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 4.8e-53 211.5 155 73.5
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 6.3e-53 211.1 160 71.2
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 4.1e-52 208.4 155 72.3
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 5.3e-52 208.0 155 73.5
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 7.0e-52 207.6 157 70.1
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 1.2e-51 206.8 159 69.8
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 3.5e-51 205.3 159 71.1
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 3.5e-51 205.3 129 82.2
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 5.9e-51 204.5 155 69.7
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 5.9e-51 204.5 155 69.7
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 7.7e-51 204.1 157 72.0
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 1.0e-50 203.8 155 69.7
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.0e-50 203.8 155 69.7
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.0e-50 203.8 155 69.7
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.2e-50 202.6 155 69.0
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 2.9e-50 202.2 155 69.0
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 3.8e-50 201.8 159 69.8
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 8.5e-50 200.7 155 69.0
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 1.5e-49 199.9 159 69.2
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 1.9e-49 199.5 185 60.5
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 2.5e-49 199.1 155 69.7
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 3.2e-49 198.7 155 67.7
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 4.2e-49 198.4 158 67.7
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 7.2e-49 197.6 201 58.2
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 7.2e-49 197.6 157 68.2
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 1.2e-48 196.8 155 67.1
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 2.7e-48 195.7 153 69.3
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 8.0e-48 194.1 153 68.0
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 6.8e-47 191.0 155 65.2
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 8.8e-47 190.7 155 69.0
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 1.2e-46 190.3 155 69.0
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-46 189.9 148 72.3
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.0e-46 189.5 155 69.7
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 7.5e-46 187.6 157 63.7
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 9.8e-46 187.2 155 69.0
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 9.8e-46 187.2 155 69.0
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.7e-45 186.4 151 66.2
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 2.2e-45 186.0 156 64.7
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 2.8e-45 185.7 157 65.0
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 4.8e-45 184.9 155 68.4
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 8.3e-45 184.1 155 64.5
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-44 183.7 145 69.7
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.1e-44 183.7 145 69.7
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.1e-44 183.7 155 64.5
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 1.8e-44 183.0 157 65.0
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.4e-44 182.6 155 65.2
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-44 182.2 159 66.7
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.1e-44 181.8 154 64.9
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.1e-44 181.8 155 67.7
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 5.4e-44 181.4 156 63.5
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 5.4e-44 181.4 155 62.6
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 5.4e-44 181.4 155 61.9
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 7.0e-44 181.0 151 66.2
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 9.1e-44 180.6 157 64.3
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 2.0e-43 179.5 157 59.2
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 2.7e-43 179.1 159 64.2
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 3.5e-43 178.7 154 64.3
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.2e-42 176.0 167 63.5
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 2.2e-42 176.0 123 75.6
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 1.1e-41 173.7 183 55.7
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.9e-41 172.9 154 61.7
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 2.5e-41 172.6 152 60.5
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 3.6e-40 168.7 156 62.2
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 6.1e-40 167.9 270 42.6
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 1.4e-39 166.8 125 71.2
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 2.0e-38 162.9 123 70.7
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 1.3e-37 160.2 130 68.5
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 1.7e-37 159.8 93 87.1
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 2.2e-37 159.5 153 55.6
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.9e-37 158.3 153 55.6
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 6.3e-37 157.9 150 57.3
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 6.3e-37 157.9 164 56.7
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 8.3e-37 157.5 141 62.4
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 8.3e-37 157.5 153 56.9
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 8.3e-37 157.5 153 56.9
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 8.3e-37 157.5 153 56.9
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 1.4e-36 156.8 116 70.7
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 1.4e-36 156.8 139 63.3
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 1.8e-36 156.4 93 82.8
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 2.4e-36 156.0 150 60.0
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 3.1e-36 155.6 153 54.2
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 4.1e-36 155.2 112 71.4
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 5.4e-36 154.8 166 55.4
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 5.4e-36 154.8 148 58.1
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 2.0e-35 152.9 153 54.9
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 4.5e-35 151.8 157 54.1
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.0e-34 150.6 93 77.4
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 5.0e-34 148.3 156 53.8
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.6e-34 147.9 95 83.2
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 6.6e-34 147.9 98 76.5
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 8.6e-34 147.5 153 56.2
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 4.3e-33 145.2 127 63.8
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 2.8e-32 142.5 161 52.2
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 8.0e-32 141.0 154 57.1
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.0e-31 139.0 115 66.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 5.2e-31 138.3 160 54.4
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 1.5e-30 136.7 102 67.6
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.0e-30 136.3 125 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.0e-30 136.3 144 55.6
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 2.0e-30 136.3 152 52.6
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 9.8e-30 134.0 143 56.6
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 1.7e-29 133.3 178 48.3
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 4.9e-29 131.7 96 69.8
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.8e-28 129.8 155 49.0
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.5e-25 117.5 170 46.5
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 2.1e-24 116.3 94 64.9
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 4.7e-24 115.2 143 51.0
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 6.2e-24 114.8 149 51.0
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 2.3e-23 112.8 92 64.1
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 2.0e-19 99.8 85 65.9
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 1.0e-18 97.4 87 65.5
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 5.0e-18 95.1 89 64.0
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 7.3e-17 91.3 71 63.4
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 8.1e-16 87.8 85 51.8
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.8e-15 86.7 89 57.3
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 4.0e-15 85.5 60 71.7
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 5.2e-15 85.1 88 55.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 4.9e-13 78.6 46 76.1
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 7.1e-12 74.7 63 57.1
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 2.7e-11 72.8 63 57.1
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 6.0e-11 71.6 62 64.5
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.1e-09 67.4 66 51.5
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 1.5e-09 67.0 95 45.3
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 2.8e-08 62.8 31 90.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 6.2e-08 61.6 76 46.1
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 1.4e-07 60.5 86 43.0
DCAR_012546 Daucus carota HOM05D004104 ORTHO05D004755 2.3e-07 59.7 144 35.4


User provided reference genes

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