Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G218400 Populus trichocarpa HOM05D004045 ORTHO05D004923 0.0e+00 1125.9 589 100.0
Sabra05G0167500 Salix brachista HOM05D004045 ORTHO05D004923 9.9e-285 983.0 590 89.0
Potri.002G044800 Populus trichocarpa HOM05D004045 ORTHO05D004923 1.9e-275 952.2 589 85.6
Sabra02G0035900 Salix brachista HOM05D004045 ORTHO05D004923 1.1e-264 916.4 663 76.2
Manes.01G201500 Manihot esculenta HOM05D004045 ORTHO05D004923 8.5e-244 847.0 590 75.3
Gohir.A07G209100 Gossypium hirsutum HOM05D004045 ORTHO05D004923 8.2e-231 803.9 595 71.3
Gohir.D07G215000 Gossypium hirsutum HOM05D004045 ORTHO05D004923 9.1e-230 800.4 598 70.7
Gorai.001G243000 Gossypium raimondii HOM05D004045 ORTHO05D004923 1.5e-229 799.7 598 70.7
Gorai.001G243100 Gossypium raimondii HOM05D004045 ORTHO05D004923 2.0e-229 799.3 599 70.5
Gohir.D07G215300 Gossypium hirsutum HOM05D004045 ORTHO05D004923 5.9e-229 797.7 599 70.5
QL12p042733 Quercus lobata HOM05D004045 ORTHO05D004923 3.7e-223 778.5 612 71.7
TWI12G0443 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 2.4e-222 775.8 588 68.7
Dinv22479 Davidia involucrata HOM05D004045 ORTHO05D004923 4.5e-221 771.5 606 70.8
Cpa.g.sc52.91 Carica papaya HOM05D004045 ORTHO05D004923 5.9e-221 771.2 589 69.4
Duzib133G0161 Durio zibethinus HOM05D004045 ORTHO05D004923 5.0e-220 768.1 582 71.8
CiPaw.03G257500 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.9e-219 766.1 607 67.7
TAR362G1267 Trochodendron aralioides HOM05D004045 ORTHO05D004923 5.5e-219 764.6 589 69.3
TWI18G1228 Tripterygium wilfordii HOM05D004045 ORTHO05D004923 1.6e-218 763.1 589 69.6
Ciclev10019274m.g Citrus clementina HOM05D004045 ORTHO05D004923 3.0e-217 758.8 592 67.7
vmacro14871 Vaccinium macrocarpon HOM05D004045 ORTHO05D004923 4.0e-217 758.4 592 67.9
Thecc.01G267300 Theobroma cacao HOM05D004045 ORTHO05D004923 1.5e-216 756.5 574 73.5
Atru.chr5.1570 Acer truncatum HOM05D004045 ORTHO05D004923 7.5e-216 754.2 587 68.7
Actinidia09090 Actinidia chinensis HOM05D004045 ORTHO05D004923 7.5e-216 754.2 586 67.6
Duzib138G0995 Durio zibethinus HOM05D004045 ORTHO05D004923 6.3e-215 751.1 589 69.6
Haze_24534 Corylus avellana HOM05D004045 ORTHO05D004923 8.2e-215 750.7 593 68.3
GSVIVG01000724001 Vitis vinifera HOM05D004045 ORTHO05D004923 2.4e-214 749.2 587 68.3
Duzib211G0616 Durio zibethinus HOM05D004045 ORTHO05D004923 4.1e-214 748.4 600 69.3
Cfa002328 Carpinus fangiana HOM05D004045 ORTHO05D004923 8.5e-212 740.7 595 67.6
CsaV3_7G027590 Cucumis sativus L. HOM05D004045 ORTHO05D004923 1.9e-211 739.6 585 68.2
Cc01_g18840 Coffea canephora HOM05D004045 ORTHO05D004923 7.2e-211 737.6 607 64.7
MELO3C015764.2 Cucumis melo HOM05D004045 ORTHO05D004923 1.2e-210 736.9 587 69.3
MD05G1205600 Malus domestica HOM05D004045 ORTHO05D004923 1.0e-209 733.8 601 65.4
Nitab4.5_0000187g0210 Nicotiana tabacum HOM05D004045 ORTHO05D004923 1.2e-208 730.3 630 62.7
Sopen09g027670 Solanum pennellii HOM05D004045 ORTHO05D004923 2.0e-208 729.6 600 64.8
PGSC0003DMG400019300 Solanum tuberosum HOM05D004045 ORTHO05D004923 5.7e-208 728.0 599 64.3
MD10G1192800 Malus domestica HOM05D004045 ORTHO05D004923 7.5e-208 727.6 599 65.3
Lalb_Chr02g0142411 Lupinus albus HOM05D004045 ORTHO05D004923 9.8e-208 727.2 594 64.5
CANSAT01G0779 Cannabis sativa HOM05D004045 ORTHO05D004923 1.7e-207 726.5 604 62.7
CAN.G1259.1 Capsicum annuum HOM05D004045 ORTHO05D004923 1.7e-207 726.5 581 66.8
CSS0003244 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 4.8e-207 724.9 583 65.5
Rhsim01G0269600 Rhododendron simsii HOM05D004045 ORTHO05D004923 2.7e-205 719.2 587 65.6
Actinidia19983 Actinidia chinensis HOM05D004045 ORTHO05D004923 3.8e-204 715.3 486 75.3
PGR119G1275 Punica granatum HOM05D004045 ORTHO05D004923 3.8e-204 715.3 607 67.7
Solyc06g084060.3 Solanum lycopersicum HOM05D004045 ORTHO05D004923 1.1e-203 713.8 597 64.3
PGSC0003DMG400020140 Solanum tuberosum HOM05D004045 ORTHO05D004923 1.5e-203 713.4 597 64.8
Oeu025793.1 Olea europaea HOM05D004045 ORTHO05D004923 1.9e-203 713.0 608 62.8
Nitab4.5_0004899g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 4.2e-203 711.8 588 66.7
Lsat_1_v5_gn_9_9980 Lactuca sativa HOM05D004045 ORTHO05D004923 7.2e-203 711.1 607 63.1
Nitab4.5_0001044g0050 Nicotiana tabacum HOM05D004045 ORTHO05D004923 7.2e-203 711.1 612 65.0
Sopen06g035450 Solanum pennellii HOM05D004045 ORTHO05D004923 1.2e-202 710.3 597 64.0
Sed0019687 Sechium edule HOM05D004045 ORTHO05D004923 8.0e-202 707.6 575 64.9
Phvul.007G176500 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.0e-201 705.7 571 65.0
MBI11_g02060_MAGBIO Magnolia biondii HOM05D004045 ORTHO05D004923 6.8e-201 704.5 590 65.3
Nitab4.5_0003053g0010 Nicotiana tabacum HOM05D004045 ORTHO05D004923 6.8e-201 704.5 624 61.5
Nn3g19505 Nelumbo nucifera HOM05D004045 ORTHO05D004923 8.9e-201 704.1 593 63.1
CiPaw.04G182000 Carya illinoinensis HOM05D004045 ORTHO05D004923 1.5e-200 703.4 513 73.3
Eucgr.B01491 Eucalyptus grandis HOM05D004045 ORTHO05D004923 1.5e-200 703.4 621 65.5
Glyma.19G161300 Glycine max HOM05D004045 ORTHO05D004923 2.0e-200 703.0 593 63.2
VMungo0720G0425 Vigna mungo HOM05D004045 ORTHO05D004923 4.4e-200 701.8 574 64.6
THA.LOC104804696 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 2.8e-199 699.1 568 65.0
Sed0014339 Sechium edule HOM05D004045 ORTHO05D004923 3.7e-199 698.7 582 65.8
CSS0008019 Camellia sinensis var. sinensis HOM05D004045 ORTHO05D004923 1.1e-198 697.2 581 64.4
ECA247G4082 Erigeron canadensis HOM05D004045 ORTHO05D004923 1.1e-198 697.2 621 62.5
Dinv34570 Davidia involucrata HOM05D004045 ORTHO05D004923 7.0e-198 694.5 511 71.2
Prupe.8G232000 Prunus persica HOM05D004045 ORTHO05D004923 9.2e-198 694.1 592 62.3
SGA_v2.0_scaffold138G35275 Striga asiatica HOM05D004045 ORTHO05D004923 1.6e-197 693.3 609 60.3
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 1.6e-197 693.3 590 63.7
Peaxi162Scf00049g00208 Petunia axillaris HOM05D004045 ORTHO05D004923 5.9e-197 691.4 602 63.1
Peaxi162Scf01311g00024 Petunia axillaris HOM05D004045 ORTHO05D004923 5.9e-197 691.4 596 63.9
Lj2A1159T22 Lonicera japonica HOM05D004045 ORTHO05D004923 7.8e-197 691.0 511 71.0
DCAR_018449 Daucus carota HOM05D004045 ORTHO05D004923 1.0e-196 690.6 589 63.3
Nn1g02572 Nelumbo nucifera HOM05D004045 ORTHO05D004923 2.3e-196 689.5 598 62.7
FvH4_2g22510 Fragaria vesca HOM05D004045 ORTHO05D004923 6.6e-196 688.0 603 61.7
ClCG09G007540 Citrullus lanatus HOM05D004045 ORTHO05D004923 8.6e-196 687.6 550 69.5
Thhalv10010227m.g Eutrema salsugineum HOM05D004045 ORTHO05D004923 1.1e-195 687.2 599 60.6
HanXRQChr10g0281461 Helianthus annuus HOM05D004045 ORTHO05D004923 1.9e-195 686.4 609 60.6
arahy.Tifrunner.gnm1.ann1.M5F7QZ Arachis hypogaea HOM05D004045 ORTHO05D004923 4.3e-195 685.3 615 61.8
FAN20G1895 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.3e-195 685.3 593 61.9
Ca_09715_v3 Cicer arietinum L. HOM05D004045 ORTHO05D004923 1.2e-194 683.7 595 62.4
RcHm_v2.0_Chr6g0289551 Rosa chinensis HOM05D004045 ORTHO05D004923 1.2e-194 683.7 602 61.8
arahy.Tifrunner.gnm1.ann1.CU0E1J Arachis hypogaea HOM05D004045 ORTHO05D004923 1.6e-194 683.3 607 61.4
Phvul.001G156800 Phaseolus vulgaris HOM05D004045 ORTHO05D004923 3.6e-194 682.2 594 61.6
BcaC07g39799 Brassica carinata HOM05D004045 ORTHO05D004923 8.0e-194 681.0 594 60.8
MSTRG.21511 Avicennia marina HOM05D004045 ORTHO05D004923 1.8e-193 679.9 600 61.7
Carub.0005s2125 Capsella rubella HOM05D004045 ORTHO05D004923 4.0e-193 678.7 600 61.0
Glyma.02G142300 Glycine max HOM05D004045 ORTHO05D004923 4.0e-193 678.7 596 61.6
SalBow4G0878 Salvia bowleyana HOM05D004045 ORTHO05D004923 4.0e-193 678.7 500 68.2
Lalb_Chr21g0306291 Lupinus albus HOM05D004045 ORTHO05D004923 5.2e-193 678.3 595 60.8
Glyma.10G032000 Glycine max HOM05D004045 ORTHO05D004923 6.8e-193 677.9 592 62.7
Lj5g0016746 Lotus japonicus HOM05D004045 ORTHO05D004923 6.8e-193 677.9 598 62.5
arahy.Tifrunner.gnm1.ann1.4ZN8WV Arachis hypogaea HOM05D004045 ORTHO05D004923 8.9e-193 677.6 601 61.7
C08p29800 Brassica napus HOM05D004045 ORTHO05D004923 2.0e-192 676.4 594 60.6
BcaB01g00171 Brassica carinata HOM05D004045 ORTHO05D004923 3.4e-192 675.6 593 61.0
Aqoxy5G00345 Aquilegia oxysepala HOM05D004045 ORTHO05D004923 9.8e-192 674.1 603 64.7
BolC8t50591H Brassica oleracea HOM05D004045 ORTHO05D004923 9.8e-192 674.1 594 60.6
FAN27G3048 Fragaria x ananassa HOM05D004045 ORTHO05D004923 9.8e-192 674.1 604 60.6
Aa31sc64G70 Aethionema arabicum HOM05D004045 ORTHO05D004923 1.7e-191 673.3 589 61.3
Medtr1g070515 Medicago truncatula HOM05D004045 ORTHO05D004923 2.2e-191 672.9 610 60.8
arahy.Tifrunner.gnm1.ann1.ZDV5ZG Arachis hypogaea HOM05D004045 ORTHO05D004923 2.9e-191 672.5 599 61.1
FAN24G3385 Fragaria x ananassa HOM05D004045 ORTHO05D004923 6.4e-191 671.4 623 59.6
AL5G35730 Arabidopsis lyrata HOM05D004045 ORTHO05D004923 1.4e-190 670.2 599 59.9
HanXRQChr15g0467051 Helianthus annuus HOM05D004045 ORTHO05D004923 1.2e-189 667.2 635 57.5
TPR.G35731 Trifolium pratense HOM05D004045 ORTHO05D004923 1.2e-189 667.2 590 62.0
AT3G54650 Arabidopsis thaliana HOM05D004045 ORTHO05D004923 1.6e-189 666.8 599 59.4
A09p47600 Brassica napus HOM05D004045 ORTHO05D004923 2.0e-189 666.4 594 60.6
BraA09t40216Z Brassica rapa HOM05D004045 ORTHO05D004923 3.5e-189 665.6 594 60.4
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 4.6e-189 665.2 586 61.8
Psat6g057800 Pisum sativum HOM05D004045 ORTHO05D004923 4.6e-189 665.2 629 62.0
THA.LOC104824390 Tarenaya hassleriana HOM05D004045 ORTHO05D004923 6.0e-189 664.8 607 58.8
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 1.5e-187 660.2 541 64.3
Migut.D00375 Erythranthe guttata HOM05D004045 ORTHO05D004923 1.2e-186 657.1 605 62.0
Glyma.03G158900 Glycine max HOM05D004045 ORTHO05D004923 1.2e-186 657.1 590 60.3
CARHR164560 Cardamine hirsuta HOM05D004045 ORTHO05D004923 2.1e-186 656.4 600 59.5
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 5.2e-185 651.7 621 58.3
Sp5g07800 Schrenkiella parvula HOM05D004045 ORTHO05D004923 2.0e-184 649.8 602 58.6
Gohir.A07G209200 Gossypium hirsutum HOM05D004045 ORTHO05D004923 2.9e-183 646.0 487 70.4
EL10Ac5g10476 Beta vulgaris HOM05D004045 ORTHO05D004923 1.0e-180 637.5 594 63.3
TAR633G0766 Trochodendron aralioides HOM05D004045 ORTHO05D004923 8.6e-180 634.4 582 60.1
Hund02880 Selenicereus undatus HOM05D004045 ORTHO05D004923 2.1e-178 629.8 573 60.0
A04p05190 Brassica napus HOM05D004045 ORTHO05D004923 4.7e-178 628.6 593 56.8
BcaC02g09055 Brassica carinata HOM05D004045 ORTHO05D004923 1.5e-176 623.6 564 60.6
PSO832G0351 Papaver somniferum HOM05D004045 ORTHO05D004923 4.4e-176 622.1 652 55.5
PSO210G5962 Papaver somniferum HOM05D004045 ORTHO05D004923 3.7e-175 619.0 664 55.0
BraA04t16229Z Brassica rapa HOM05D004045 ORTHO05D004923 2.4e-174 616.3 573 57.8
Ah.11g049960 Amaranthus hybridus HOM05D004045 ORTHO05D004923 3.5e-173 612.5 591 57.0
C04p37930 Brassica napus HOM05D004045 ORTHO05D004923 7.3e-171 604.7 546 60.8
unitig_22.g5466 Utricularia gibba HOM05D004045 ORTHO05D004923 4.0e-169 599.0 585 57.3
ATR0665G431 Amborella trichopoda HOM05D004045 ORTHO05D004923 4.4e-168 595.5 596 56.2
HPP92_015890 Vanilla planifolia HOM05D004045 ORTHO05D004923 8.4e-167 591.3 585 56.1
AUR62032255 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.7e-165 586.3 469 65.2
BcaB02g08450 Brassica carinata HOM05D004045 ORTHO05D004923 1.6e-162 577.0 584 54.6
CDE06G0297 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 9.0e-161 571.2 540 56.1
CDE02G4505 Ceratophyllum demersum HOM05D004045 ORTHO05D004923 7.6e-160 568.2 550 56.0
Sc24g0004300 Simmondsia chinensis HOM05D004045 ORTHO05D004923 7.1e-158 561.6 498 64.7
HPP92_026284 Vanilla planifolia HOM05D004045 ORTHO05D004923 3.4e-152 542.7 638 49.8
Os12g0601000 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.4e-150 536.6 557 52.4
BolC4t25368H Brassica oleracea HOM05D004045 ORTHO05D004923 1.1e-147 527.7 451 61.4
SHI09942 Sapria himalayana HOM05D004045 ORTHO05D004923 3.7e-146 522.7 591 51.8
Zm00001eb051080 Zea mays HOM05D004045 ORTHO05D004923 1.3e-143 514.2 566 53.2
Zm00001eb135530 Zea mays HOM05D004045 ORTHO05D004923 6.7e-140 501.9 586 49.0
HPP92_015894 Vanilla planifolia HOM05D004045 ORTHO05D004923 1.6e-138 497.3 448 59.4
AUR62011940 Chenopodium quinoa HOM05D004045 ORTHO05D004923 2.1e-138 496.9 364 71.4
Solyc09g065880.4 Solanum lycopersicum HOM05D004045 ORTHO05D004923 5.3e-137 492.3 338 74.6
Oeu010137.1 Olea europaea HOM05D004045 ORTHO05D004923 2.0e-112 410.6 317 69.4
Zm00001eb031170 Zea mays HOM05D004045 ORTHO05D004923 3.5e-112 409.8 379 57.5
SEGI_41615 Sequoiadendron giganteum HOM05D004045 ORTHO05D004923 1.2e-109 401.4 507 44.6
Os03g0633400 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 2.2e-103 380.6 338 60.4
COL.COLO4_06074 Corchorus olitorius HOM05D004045 ORTHO05D004923 7.5e-99 365.5 362 56.6
arahy.Tifrunner.gnm1.ann1.RJD5GQ Arachis hypogaea HOM05D004045 ORTHO05D004923 9.5e-70 268.9 274 58.4
Oeu009234.1 Olea europaea HOM05D004045 ORTHO05D004923 1.3e-66 258.5 163 81.6
arahy.Tifrunner.gnm1.ann1.X4NPJI Arachis hypogaea HOM05D004045 ORTHO05D004923 2.6e-59 234.2 234 60.7
Hma1.2p1_0744F.1_g211840 Hydrangea macrophylla HOM05D004045 ORTHO05D004923 3.5e-48 197.2 138 76.1
Oeu039511.1 Olea europaea HOM05D004045 ORTHO05D004923 7.3e-46 189.5 250 47.2
CBR_g29330 Chara braunii HOM05D004045 ORTHO05D004923 4.3e-38 163.7 465 26.9
CBR_g27883 Chara braunii HOM05D004045 ORTHO05D004923 1.8e-36 158.3 318 34.6
PRCOL_00001919 Prasinoderma coloniale HOM05D004045 ORTHO05D004923 1.1e-30 139.0 530 24.9
Sc24g0004260 Simmondsia chinensis HOM05D004045 ORTHO05D004923 2.8e-29 134.4 167 52.1
Psat7g235240 Pisum sativum HOM05D004045 ORTHO05D004923 2.9e-26 124.4 101 63.4
Medtr2g066740 Medicago truncatula HOM05D004045 ORTHO05D004923 4.0e-20 104.0 128 46.1
Lj1g0005140 Lotus japonicus HOM05D004045 ORTHO05D004923 3.4e-19 100.9 80 60.0
Medtr0878s0020 Medicago truncatula HOM05D004045 ORTHO05D004923 6.5e-18 96.7 86 55.8
PSO591G0166 Papaver somniferum HOM05D004045 ORTHO05D004923 6.5e-18 96.7 85 60.0
Rhsim04G0076300 Rhododendron simsii HOM05D004045 ORTHO05D004923 1.9e-17 95.1 135 43.7
Os03g0633100 Oryza sativa ssp. japonica HOM05D004045 ORTHO05D004923 1.3e-15 89.0 195 45.6
Rhsim07G0057800 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.3e-15 89.0 87 55.2
arahy.Tifrunner.gnm1.ann1.KW8Q2S Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-15 88.6 66 72.7
Psat7g221000 Pisum sativum HOM05D004045 ORTHO05D004923 1.8e-15 88.6 101 51.5
AUR62027361 Chenopodium quinoa HOM05D004045 ORTHO05D005832 2.5e-14 84.7 103 50.5
Lsat_1_v5_gn_5_80480 Lactuca sativa HOM05D004045 ORTHO05D002405 1.8e-07 62.0 35 85.7
Duzib116G0512 Durio zibethinus HOM05D001905 ORTHO05D001820 3.0e-07 61.2 436 22.0
Lsat_1_v5_gn_1_65601 Lactuca sativa HOM05D001017 ORTHO05D001025 6.7e-07 60.1 36 83.3
Glyma.17G238700 Glycine max HOM05D001905 ORTHO05D001820 8.8e-07 59.7 337 23.1
VMungo0647G1437 Vigna mungo HOM05D001905 ORTHO05D001820 1.5e-06 58.9 341 24.3
AUR62026403 Chenopodium quinoa HOM05D012008 ORTHO05D014086 2.5e-06 58.2 43 62.8
Phvul.001G024700 Phaseolus vulgaris HOM05D001905 ORTHO05D001820 2.5e-06 58.2 452 21.5
Psat6g015040 Pisum sativum HOM05D001905 ORTHO05D001820 2.5e-06 58.2 504 21.2
RhsimUnG0001000 Rhododendron simsii HOM05D004045 ORTHO05D004923 5.7e-06 57.0 34 76.5
Glyma.14G086000 Glycine max HOM05D001905 ORTHO05D001820 7.4e-06 56.6 337 22.6


User provided reference genes

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