Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 6.5e-35 150.2 78 100.0
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.8e-24 115.5 78 79.5
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 3.7e-22 107.8 70 81.4
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 3.6e-17 91.3 76 68.4
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.2e-14 82.0 50 86.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 3.7e-14 81.3 56 75.0
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 3.7e-14 81.3 46 89.1
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 1.8e-13 79.0 76 63.2
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.4e-13 78.6 45 84.4
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.4e-13 78.6 57 71.9
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 3.2e-13 78.2 42 90.5
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 7.0e-13 77.0 56 67.9
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 7.0e-13 77.0 42 90.5
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.0e-13 77.0 72 61.1
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 7.0e-13 77.0 72 61.1
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.2e-12 76.3 72 62.5
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.2e-12 76.3 45 84.4
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 1.6e-12 75.9 60 73.3
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.0e-12 75.5 45 80.0
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 2.0e-12 75.5 57 71.9
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.0e-12 75.5 57 71.9
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.0e-12 75.5 54 75.9
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 2.0e-12 75.5 77 62.3
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.7e-12 75.1 62 67.7
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 3.5e-12 74.7 42 83.3
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 4.6e-12 74.3 54 70.4
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 4.6e-12 74.3 58 65.5
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 5.9e-12 73.9 45 82.2
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 5.9e-12 73.9 56 71.4
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.0e-11 73.2 42 88.1
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 1.0e-11 73.2 56 73.2
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 1.3e-11 72.8 49 75.5
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 1.3e-11 72.8 49 75.5
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 1.3e-11 72.8 49 75.5
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.3e-11 72.8 69 66.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 1.7e-11 72.4 62 62.9
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.7e-11 72.4 42 83.3
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 1.7e-11 72.4 50 76.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 1.7e-11 72.4 52 67.3
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 2.3e-11 72.0 59 67.8
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 2.3e-11 72.0 60 60.0
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 2.3e-11 72.0 58 63.8
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.3e-11 72.0 72 55.6
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 2.3e-11 72.0 62 62.9
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 2.3e-11 72.0 52 75.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 2.3e-11 72.0 58 69.0
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.9e-11 71.6 57 64.9
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 2.9e-11 71.6 48 75.0
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 2.9e-11 71.6 56 71.4
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 3.9e-11 71.2 51 70.6
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 3.9e-11 71.2 41 85.4
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 5.0e-11 70.9 58 63.8
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 5.0e-11 70.9 49 73.5
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 5.0e-11 70.9 49 73.5
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 5.0e-11 70.9 42 81.0
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 5.0e-11 70.9 60 60.0
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 6.6e-11 70.5 49 73.5
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.1e-10 69.7 53 66.0
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.1e-10 69.7 53 67.9
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.5e-10 69.3 50 70.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 1.9e-10 68.9 65 61.5
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.9e-10 68.9 45 71.1
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 1.9e-10 68.9 69 59.4
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 3.3e-10 68.2 48 70.8
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 7.3e-10 67.0 49 69.4
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 7.3e-10 67.0 42 73.8
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 7.3e-10 67.0 60 61.7
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 9.5e-10 66.6 70 55.7
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 1.2e-09 66.2 45 71.1
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.6e-09 65.9 49 69.4
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.6e-09 65.9 48 70.8
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 2.1e-09 65.5 64 56.2
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.1e-09 65.5 46 69.6
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 2.8e-09 65.1 56 60.7
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 3.6e-09 64.7 46 67.4
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.6e-09 64.7 53 64.2
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 6.2e-09 63.9 66 54.5
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 8.0e-09 63.5 52 65.4
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 8.0e-09 63.5 46 67.4
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.0e-08 63.2 52 65.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 1.0e-08 63.2 39 79.5
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 2.3e-08 62.0 42 71.4
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 5.2e-08 60.8 52 67.3
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 8.9e-08 60.1 37 78.4
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 1.5e-07 59.3 49 61.2
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 4.4e-07 57.8 66 50.0
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 6.4e-06 53.9 49 63.3


User provided reference genes

Program Settings