Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 1.6e-71 272.7 142 100.0
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.6e-50 202.2 143 79.7
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.9e-48 196.1 143 75.5
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 7.2e-32 141.0 145 60.7
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 4.4e-29 131.7 146 57.5
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 4.8e-28 128.3 149 57.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 2.7e-26 122.5 121 60.3
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 7.7e-26 120.9 144 51.4
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 2.2e-25 119.4 149 51.7
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.0e-22 110.5 118 55.9
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 5.2e-22 108.2 133 50.4
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 8.8e-22 107.5 127 52.8
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 2.6e-21 105.9 145 48.3
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 7.5e-21 104.4 147 49.0
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 7.5e-21 104.4 145 48.3
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 9.8e-21 104.0 147 49.0
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 9.8e-21 104.0 147 49.0
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.7e-20 103.2 148 45.9
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 2.8e-20 102.4 145 42.1
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.8e-20 102.4 113 54.0
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 2.8e-20 102.4 151 47.0
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 6.3e-20 101.3 146 47.3
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 8.3e-20 100.9 65 75.4
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 3.1e-19 99.0 140 47.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 7.0e-19 97.8 144 45.8
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 9.1e-19 97.4 61 77.0
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.2e-18 97.1 79 60.8
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.2e-18 97.1 117 48.7
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 1.6e-18 96.7 141 47.5
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.0e-18 96.3 64 73.4
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 2.7e-18 95.9 95 54.7
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 5.9e-18 94.7 64 71.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 7.7e-18 94.4 131 48.9
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.3e-17 92.8 61 73.8
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 2.9e-17 92.4 143 45.5
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 2.9e-17 92.4 116 48.3
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 2.9e-17 92.4 58 74.1
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 3.8e-17 92.0 66 69.7
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 3.8e-17 92.0 147 42.9
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 5.0e-17 91.7 104 50.0
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 5.0e-17 91.7 104 50.0
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 5.0e-17 91.7 80 57.5
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 8.6e-17 90.9 75 65.3
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-16 90.1 106 48.1
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 1.5e-16 90.1 80 57.5
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 1.5e-16 90.1 106 48.1
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.5e-16 90.1 64 68.8
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.9e-16 89.7 125 48.8
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 2.5e-16 89.4 100 49.0
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 2.5e-16 89.4 100 49.0
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 2.5e-16 89.4 100 49.0
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.5e-16 89.4 75 64.0
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 3.3e-16 89.0 64 67.2
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.3e-16 89.0 147 41.5
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 3.3e-16 89.0 61 67.2
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 4.2e-16 88.6 100 48.0
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 4.2e-16 88.6 100 48.0
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 5.5e-16 88.2 61 67.2
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 7.2e-16 87.8 61 65.6
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 9.5e-16 87.4 80 55.0
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 9.5e-16 87.4 80 55.0
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 9.5e-16 87.4 80 55.0
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 9.5e-16 87.4 135 45.2
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 9.5e-16 87.4 144 43.8
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 2.1e-15 86.3 140 43.6
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 2.8e-15 85.9 70 65.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 2.8e-15 85.9 70 65.7
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 4.7e-15 85.1 104 47.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 6.1e-15 84.7 61 65.6
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 6.1e-15 84.7 70 64.3
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 8.0e-15 84.3 101 50.5
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 1.4e-14 83.6 61 65.6
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.4e-14 83.6 159 39.6
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.4e-14 83.6 159 39.6
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 3.0e-14 82.4 142 40.8
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 3.0e-14 82.4 61 67.2
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.0e-14 82.4 99 48.5
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 4.0e-14 82.0 59 66.1
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 5.2e-14 81.6 61 68.9
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 5.2e-14 81.6 141 41.8
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 6.8e-14 81.3 125 42.4
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 6.8e-14 81.3 120 43.3
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 8.9e-14 80.9 126 41.3
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 8.9e-14 80.9 65 63.1
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 1.2e-13 80.5 62 62.9
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 1.5e-13 80.1 61 65.6
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-13 79.0 113 43.4
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-13 79.0 142 40.1
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 3.4e-13 79.0 113 43.4
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.4e-13 79.0 68 60.3
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 3.4e-13 79.0 81 56.8
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 3.4e-13 79.0 100 46.0
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 4.4e-13 78.6 104 44.2
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 5.7e-13 78.2 93 50.5
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 5.7e-13 78.2 93 50.5
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 5.7e-13 78.2 129 47.3
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 9.8e-13 77.4 100 45.0
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 9.8e-13 77.4 100 45.0
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 9.8e-13 77.4 69 59.4
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.3e-12 77.0 145 40.7
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.1e-11 72.0 56 58.9
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 9.2e-11 70.9 94 51.1
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 9.2e-11 70.9 94 51.1
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 9.2e-11 70.9 94 51.1
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.3e-09 67.0 59 55.9
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.3e-09 66.2 95 37.9
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.8e-09 65.5 64 57.8
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-09 65.5 55 56.4
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 3.8e-09 65.5 55 56.4
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 8.6e-09 64.3 49 63.3
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 3.3e-08 62.4 72 47.2
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 9.5e-08 60.8 93 33.3
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 1.6e-07 60.1 71 46.5
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 2.1e-07 59.7 56 51.8
Eucgr.A01970 Eucalyptus grandis HOM05D006973 ORTHO05D008636 2.8e-07 59.3 135 37.8
Os01g0630300 Oryza sativa ssp. japonica HOM05D006973 ORTHO05D008636 3.6e-07 58.9 57 47.4
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 4.7e-07 58.5 93 34.4
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.4e-06 57.0 53 43.4
ATR0693G249 Amborella trichopoda HOM05D001624 ORTHO05D001530 2.3e-06 56.2 57 42.1
SEGI_27334 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.3e-06 56.2 58 55.2
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 5.2e-06 55.1 56 39.3
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 5.2e-06 55.1 44 52.3
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 6.8e-06 54.7 54 44.4


User provided reference genes

Program Settings