Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G201400 Populus trichocarpa HOM05D006785 ORTHO05D006259 9.2e-101 370.9 304 100.0
Sabra02G0048700 Salix brachista HOM05D006785 ORTHO05D006259 5.8e-47 192.2 304 68.1
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 1.4e-45 187.6 307 48.9
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 3.5e-44 183.0 306 42.5
Potri.002G060200 Populus trichocarpa HOM05D006785 ORTHO05D006259 3.3e-42 176.4 304 67.1
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 4.5e-31 139.4 337 43.9
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 1.8e-27 127.5 325 41.8
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 5.1e-27 125.9 326 48.5
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 2.8e-25 120.2 325 42.5
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 1.5e-23 114.4 336 47.9
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 4.5e-23 112.8 322 40.1
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.6e-20 104.4 330 34.5
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 2.7e-20 103.6 233 42.9
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 7.9e-20 102.1 339 40.7
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 3.0e-19 100.1 235 41.3
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 3.9e-19 99.8 310 41.9
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 3.9e-19 99.8 332 42.2
Phvul.008G191300 Phaseolus vulgaris HOM05D006785 ORTHO05D006259 6.7e-19 99.0 239 47.7
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 3.3e-18 96.7 330 43.0
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 7.4e-18 95.5 309 32.7
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 4.8e-17 92.8 336 41.7
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 8.2e-17 92.0 325 40.9
Gorai.008G098200 Gossypium raimondii HOM05D006785 ORTHO05D006259 1.8e-16 90.9 309 32.0
Gohir.D12G068400 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.4e-16 90.5 309 32.0
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 3.1e-16 90.1 230 34.3
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 1.2e-15 88.2 319 43.3
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 2.0e-15 87.4 321 32.4
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 2.0e-15 87.4 325 31.4
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 2.6e-15 87.0 320 34.1
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.5e-15 86.7 355 28.2
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 3.5e-15 86.7 355 28.2
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 4.5e-15 86.3 230 33.5
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 5.9e-15 85.9 230 34.3
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 5.9e-15 85.9 317 38.5
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 5.9e-15 85.9 329 41.0
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 7.7e-15 85.5 331 28.4
CARHR006150 Cardamine hirsuta HOM05D006785 ORTHO05D006259 2.2e-14 84.0 208 36.5
THA.LOC104800823 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 2.2e-14 84.0 190 35.3
Eucgr.A01969 Eucalyptus grandis HOM05D006785 ORTHO05D006259 2.9e-14 83.6 325 42.2
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 5.0e-14 82.8 330 39.1
Glyma.14G027900 Glycine max HOM05D006785 ORTHO05D006259 8.5e-14 82.0 327 46.8
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 8.5e-14 82.0 200 41.0
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 1.5e-13 81.3 293 37.9
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 1.9e-13 80.9 343 28.3
Duzib264G0099 Durio zibethinus HOM05D006785 ORTHO05D006259 7.2e-13 79.0 146 41.8
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.6e-12 77.8 307 36.8
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 2.1e-12 77.4 312 44.2
Gohir.D04G036800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 2.7e-12 77.0 174 40.8
Gohir.A05G378800 Gossypium hirsutum HOM05D006785 ORTHO05D006259 4.7e-12 76.3 174 40.2
Gorai.012G041600 Gossypium raimondii HOM05D006785 ORTHO05D006259 6.1e-12 75.9 174 40.2
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 8.0e-12 75.5 327 38.8
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 1.0e-11 75.1 198 47.5
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 1.8e-11 74.3 328 41.5
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.3e-11 73.9 312 37.8
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 4.0e-11 73.2 320 40.3
Lj1P620T12 Lonicera japonica HOM05D006785 ORTHO05D006259 6.7e-11 72.4 262 38.9
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.1e-10 71.6 310 37.1
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 2.0e-10 70.9 233 30.0
TPR.G12660 Trifolium pratense HOM05D006785 ORTHO05D006259 2.6e-10 70.5 326 39.9
VMungo0647G1995 Vigna mungo HOM05D006785 ORTHO05D006259 2.6e-10 70.5 327 39.1
Duzib147G0591 Durio zibethinus HOM05D006785 ORTHO05D006259 3.3e-10 70.1 310 46.1
arahy.Tifrunner.gnm1.ann1.W4MS3F Arachis hypogaea HOM05D006785 ORTHO05D006259 9.7e-10 68.6 307 39.1
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 2.2e-09 67.4 235 34.0
DCAR_013314 Daucus carota HOM05D006785 ORTHO05D006259 2.2e-09 67.4 230 28.7
C05p04790 Brassica napus HOM05D006785 ORTHO05D006259 8.2e-09 65.5 125 44.8
Dinv07090 Davidia involucrata HOM05D006785 ORTHO05D006259 8.2e-09 65.5 369 26.3
Gohir.A11G224802 Gossypium hirsutum HOM05D006785 ORTHO05D006259 8.2e-09 65.5 305 37.4
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 1.1e-08 65.1 220 36.4
LjContig00310g0014416 Lotus japonicus HOM05D006785 ORTHO05D006259 7.0e-08 62.4 263 38.8
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 1.2e-07 61.6 312 29.8
Psat2g015800 Pisum sativum HOM05D006785 ORTHO05D006259 2.0e-07 60.8 313 41.5
Actinidia11204 Actinidia chinensis HOM05D006785 ORTHO05D006259 2.7e-07 60.5 179 32.4
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 2.7e-07 60.5 310 30.6
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 3.5e-07 60.1 230 35.2
Hma1.2p1_0960F.1_g241635 Hydrangea macrophylla HOM05D006785 ORTHO05D006259 7.7e-07 58.9 125 40.8
Aa31LG1G7630 Aethionema arabicum HOM05D006785 ORTHO05D006259 2.2e-06 57.4 149 37.6
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 2.9e-06 57.0 150 32.0
Sp1g05290 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.8e-06 56.6 126 34.9
Duzib187G1417 Durio zibethinus HOM05D006785 ORTHO05D006259 8.5e-06 55.5 130 59.2


User provided reference genes

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