Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 2.4e-130 468.8 226 100.0
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 3.5e-121 438.3 226 92.0
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.4e-116 421.4 224 88.8
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 3.7e-115 418.3 224 87.9
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 9.8e-108 393.7 224 79.5
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 2.2e-107 392.5 224 80.4
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 8.3e-107 390.6 226 80.1
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 3.0e-104 382.1 225 78.7
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 5.0e-104 381.3 226 77.9
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 6.6e-104 380.9 226 78.3
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 4.3e-103 378.3 226 79.2
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 4.3e-103 378.3 226 77.9
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 5.6e-103 377.9 225 78.2
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 1.2e-102 376.7 226 76.1
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 3.6e-102 375.2 226 78.3
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 8.1e-102 374.0 226 77.9
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 1.1e-101 373.6 226 75.2
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 4.0e-101 371.7 226 77.4
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 5.2e-101 371.3 225 77.3
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 6.8e-101 370.9 226 77.4
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 2.6e-100 369.0 221 74.2
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 3.4e-100 368.6 226 77.0
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 5.8e-100 367.9 226 76.1
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 5.8e-100 367.9 226 76.1
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 5.8e-100 367.9 225 76.4
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 1.3e-99 366.7 226 75.7
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.7e-99 366.3 226 74.8
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 2.9e-99 365.5 226 74.8
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 6.4e-99 364.4 226 73.5
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 1.4e-98 363.2 224 74.6
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 1.9e-98 362.8 221 72.9
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 1.6e-97 359.8 226 73.0
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.6e-97 359.8 226 73.5
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 2.1e-97 359.4 226 72.6
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 2.7e-97 359.0 226 72.6
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 2.7e-97 359.0 226 72.6
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 2.7e-97 359.0 224 73.2
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 3.5e-97 358.6 226 73.0
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 3.5e-97 358.6 226 73.0
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 3.5e-97 358.6 226 73.0
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 4.6e-97 358.2 226 73.9
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 6.0e-97 357.8 226 72.6
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 6.0e-97 357.8 226 72.1
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 6.0e-97 357.8 229 74.2
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 7.8e-97 357.5 226 72.6
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 7.8e-97 357.5 226 72.6
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 2.3e-96 355.9 222 73.9
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 2.3e-96 355.9 223 71.7
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 3.9e-96 355.1 224 72.3
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 5.1e-96 354.8 224 71.9
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 5.1e-96 354.8 221 71.9
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 6.6e-96 354.4 223 72.6
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 8.6e-96 354.0 223 72.6
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 8.6e-96 354.0 224 72.3
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 8.6e-96 354.0 224 73.2
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 1.1e-95 353.6 224 71.9
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.9e-95 352.8 222 72.1
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 1.9e-95 352.8 224 72.8
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 2.5e-95 352.4 226 72.1
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 5.6e-95 351.3 222 72.1
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.6e-95 351.3 223 72.2
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 9.5e-95 350.5 223 70.9
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 1.6e-94 349.7 226 73.5
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 1.6e-94 349.7 223 71.7
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 2.1e-94 349.4 241 68.9
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 2.8e-94 349.0 223 72.2
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 4.7e-94 348.2 223 71.3
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 6.2e-94 347.8 225 70.7
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 8.1e-94 347.4 223 70.4
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 1.1e-93 347.1 220 72.3
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 3.1e-93 345.5 223 70.0
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 4.0e-93 345.1 267 62.9
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 4.0e-93 345.1 220 71.4
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 6.8e-93 344.4 220 71.4
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 8.9e-93 344.0 220 70.9
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 1.2e-92 343.6 226 68.1
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 1.5e-92 343.2 242 66.5
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 1.5e-92 343.2 226 68.1
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 5.8e-92 341.3 226 68.6
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 7.6e-92 340.9 222 69.8
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 3.7e-91 338.6 220 71.4
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 8.3e-91 337.4 223 70.0
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.4e-90 336.7 226 67.7
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 7.1e-90 334.3 226 65.5
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 9.2e-90 334.0 254 63.0
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 1.2e-89 333.6 226 64.2
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 2.7e-89 332.4 223 70.0
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 6.0e-89 331.3 226 63.3
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.0e-88 330.5 223 67.7
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 1.5e-87 326.6 237 63.3
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 1.5e-87 326.6 223 68.6
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 3.3e-87 325.5 292 57.2
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 2.1e-86 322.8 226 67.7
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 2.8e-86 322.4 187 81.3
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 8.9e-85 317.4 224 65.2
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 1.4e-82 310.1 193 72.5
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 7.1e-82 307.8 191 74.3
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 2.7e-81 305.8 196 73.0
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 3.5e-81 305.4 222 63.5
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 2.4e-77 292.7 220 62.3
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 2.0e-76 289.7 222 57.7
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 4.4e-76 288.5 213 65.7
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 3.8e-75 285.4 219 58.0
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 5.4e-74 281.6 222 60.4
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 2.1e-73 279.6 228 57.9
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 1.7e-72 276.6 194 67.5
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 1.7e-72 276.6 211 60.2
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 3.0e-72 275.8 165 77.0
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 8.7e-72 274.2 228 56.6
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 1.3e-70 270.4 226 57.5
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 2.4e-69 266.2 228 55.7
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 4.5e-68 261.9 224 54.9
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.3e-67 260.4 218 55.5
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 1.7e-67 260.0 245 51.4
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 5.5e-66 255.0 193 60.1
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 6.7e-64 248.1 151 77.5
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 6.7e-64 248.1 217 49.8
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 2.5e-63 246.1 216 53.2
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 4.3e-63 245.4 151 72.2
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 5.6e-63 245.0 219 50.2
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 1.6e-62 243.4 152 74.3
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 4.8e-62 241.9 224 57.6
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 6.9e-61 238.0 187 60.4
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 9.3e-50 201.1 186 48.9
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 2.7e-49 199.5 218 45.0
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 8.5e-43 177.9 126 61.1
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 3.6e-41 172.6 99 79.8
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.4e-40 170.6 225 40.9
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 5.5e-34 148.7 237 36.7
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 3.6e-33 146.0 162 42.6
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 5.1e-32 142.1 123 52.0
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 2.0e-23 113.6 102 49.0
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 3.1e-21 106.3 60 80.0
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 1.7e-19 100.5 82 56.1
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 2.3e-16 90.1 58 70.7
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 1.6e-09 67.4 58 58.6
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 2.0e-07 60.5 91 37.4
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.4e-07 59.7 38 71.1


User provided reference genes

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