Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 4008.4 2124 100.0
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 0.0e+00 2741.8 2119 73.8
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 0.0e+00 2376.7 1764 76.0
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 0.0e+00 1257.7 1827 47.5
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 0.0e+00 1198.0 2123 43.9
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 0.0e+00 1196.0 2082 44.4
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 0.0e+00 1171.0 2138 43.8
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 0.0e+00 1164.4 2111 43.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 0.0e+00 1155.6 2103 43.5
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 0.0e+00 1140.6 2160 42.8
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 0.0e+00 1138.6 2152 43.4
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 2.9e-311 1072.8 2170 40.9
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 4.4e-311 1072.4 2115 42.6
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 1.6e-300 1037.3 2118 41.2
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.7e-281 974.2 2286 37.5
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.2e-281 971.8 2170 39.6
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.8e-280 970.7 2162 39.6
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 3.1e-280 969.9 2137 40.1
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 2.0e-279 967.2 2186 40.1
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 2.7e-276 956.8 2104 40.0
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.3e-274 949.9 2120 39.2
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 6.7e-267 925.6 2210 38.7
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 2.1e-260 904.0 2088 38.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.9e-254 883.6 2033 39.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 6.1e-252 875.9 2175 38.1
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 3.0e-251 873.6 2062 39.3
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.3e-249 868.2 2168 38.0
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 8.0e-244 849.0 2149 37.9
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.2e-241 840.9 2157 37.8
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 7.0e-240 835.9 1243 47.9
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 1.9e-229 801.2 1452 43.0
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.3e-221 773.9 2127 36.2
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 4.0e-219 766.9 2159 36.2
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 8.9e-219 765.8 1926 37.6
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.0e-218 764.6 2095 36.8
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.4e-216 758.4 2172 36.5
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 7.1e-216 756.1 1952 37.3
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 3.0e-214 750.7 1960 36.8
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 3.0e-214 750.7 1950 36.9
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 3.8e-209 733.8 2183 34.4
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 4.3e-205 720.3 2084 35.1
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 3.8e-201 707.2 2081 36.4
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.1e-200 705.7 874 55.6
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.3e-196 692.2 781 59.5
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 3.7e-196 690.6 2185 35.0
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 5.8e-194 683.3 2106 32.9
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 1.3e-193 682.2 2107 33.7
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 1.0e-190 672.5 2075 34.7
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 2.4e-187 661.4 1933 34.2
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 2.2e-185 654.8 2042 34.0
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.0e-182 646.0 2076 33.2
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 1.3e-182 645.6 796 55.8
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.4e-176 625.5 738 57.5
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 3.6e-175 620.9 1389 38.9
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 2.2e-172 611.7 1017 46.1
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 2.1e-167 595.1 2136 33.0
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 5.1e-166 590.5 2147 33.1
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 7.7e-154 550.1 1960 32.9
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.9e-153 548.1 1948 33.6
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 1.9e-152 545.4 2151 32.5
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.6e-149 535.0 2045 32.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 4.4e-149 534.3 2026 31.6
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 7.5e-149 533.5 478 68.2
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 1.3e-148 532.7 2026 31.6
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 2.2e-148 531.9 1741 33.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.7e-148 531.2 958 44.2
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 8.2e-148 530.0 934 45.0
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 7.7e-146 523.5 2135 30.8
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.1e-144 519.6 2111 32.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.5e-144 519.2 2112 31.0
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 5.5e-144 517.3 830 46.5
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.5e-144 517.3 931 45.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 5.2e-142 510.8 2059 29.6
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.6e-141 508.4 2138 31.3
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 9.8e-141 506.5 2138 31.9
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 2.8e-140 505.0 2105 31.0
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 4.1e-139 501.1 1964 31.0
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.3e-137 496.1 812 47.5
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 5.0e-137 494.2 805 47.7
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 1.5e-136 492.7 854 43.7
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 4.0e-134 484.6 2288 30.0
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 5.7e-133 480.7 951 43.0
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.4e-131 475.3 2292 30.4
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 7.0e-131 473.8 885 42.4
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 4.5e-130 471.1 870 41.6
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.3e-129 469.5 870 41.4
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.9e-128 465.7 838 45.7
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 3.3e-128 464.9 2053 29.7
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 9.5e-128 463.4 815 43.4
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 1.6e-127 462.6 813 43.5
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 4.7e-127 461.1 2103 28.5
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 9.8e-125 453.4 845 44.7
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 1.3e-121 443.0 1941 31.4
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.7e-121 442.6 881 42.0
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 2.8e-119 435.3 666 45.8
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.6e-119 434.9 801 44.2
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.4e-117 427.9 491 58.2
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.4e-115 422.9 803 44.3
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 5.4e-115 421.0 906 41.8
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-114 419.9 735 45.9
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.9e-108 398.7 840 42.6
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 3.3e-104 385.2 791 41.8
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.6e-103 381.7 650 40.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 3.1e-102 378.6 883 39.8
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.4e-101 375.2 498 48.0
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 2.3e-97 362.5 818 39.7
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 4.3e-88 331.6 866 37.5
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 9.9e-85 320.5 686 39.8
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 9.0e-78 297.4 331 61.3
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 4.6e-74 285.0 517 45.8
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.1e-70 272.3 686 34.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.5e-69 268.5 259 55.2
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 4.9e-68 265.0 794 35.1
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 3.5e-66 258.8 284 64.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 1.4e-59 236.9 1776 27.1
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 1.6e-50 206.8 923 26.3
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 1.4e-49 203.8 1697 27.8
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 2.3e-49 203.0 577 36.7
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 4.4e-48 198.7 508 34.3
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.2e-47 196.4 1721 24.4
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 7.7e-45 188.0 1012 29.0
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 6.5e-44 184.9 219 48.4
Dinv14698 Davidia involucrata HOM05D000237 ORTHO05D006530 1.8e-38 166.8 1090 27.2
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 1.3e-36 160.6 141 61.0
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 2.7e-34 152.9 205 63.4
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.0e-33 151.0 214 42.1
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 4.0e-33 149.1 797 30.4
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 5.2e-33 148.7 87 81.6
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.6e-26 125.9 134 50.0
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 1.8e-22 113.6 320 35.6
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 1.0e-20 107.8 237 35.0
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 5.0e-20 105.5 102 55.9
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 1.9e-19 103.6 138 44.9
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 2.8e-18 99.8 99 61.6
SEGI_15365 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 8.6e-12 78.2 506 28.3
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 4.7e-10 72.4 135 40.0
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 1.0e-09 71.2 135 43.0
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 7.5e-08 65.1 143 32.2
Oeu047175.1 Olea europaea HOM05D000237 ORTHO05D006530 2.2e-07 63.5 135 30.4


User provided reference genes

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