Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G154350 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.2e-48 193.7 94 100.0
Potri.013G138612 Populus trichocarpa HOM05D000540 ORTHO05D008899 6.2e-48 193.7 94 100.0
MELO3C028092.2 Cucumis melo HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Gohir.A04G039075 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 95.7
LjContig00489g0018536 Lotus japonicus HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Sed0004093 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Sed0008426 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Sed0015411 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Sed0019752 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Sed0026411 Sechium edule HOM05D000540 ORTHO05D008899 1.3e-45 186.0 94 96.8
Lalb_Chr07g0191961 Lupinus albus HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
SalBow1G0808 Salvia bowleyana HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
SalBow1G3106 Salvia bowleyana HOM05D000540 ORTHO05D008899 2.2e-45 185.3 94 95.7
Gohir.D01G102216 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 94.7
Sed0007321 Sechium edule HOM05D000540 ORTHO05D008899 3.8e-45 184.5 94 95.7
Nn020s41485 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 95.7
Nn5g27213 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 95.7
PGR111G0050 Punica granatum HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 94.7
PGR111G0124 Punica granatum HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 94.7
RcHm_v2.0_CPg0502591 Rosa chinensis HOM05D000540 ORTHO05D008899 4.9e-45 184.1 94 95.7
DCAR_032528 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 95.7
DCAR_032548 Daucus carota HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 95.7
Gohir.A10G084500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.1e-44 183.0 94 93.6
CAN.G1109.8 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 94.7
CAN.G114.6 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 94.7
CAN.G781.25 Capsicum annuum HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 94.7
CsaV3_UNG209010 Cucumis sativus L. HOM05D000540 ORTHO05D008899 1.4e-44 182.6 93 95.7
GSVIVG01023980001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.4e-44 182.6 94 94.7
Nn1g08201 Nelumbo nucifera HOM05D000540 ORTHO05D008899 4.2e-44 181.0 94 93.6
Gohir.1Z050392 Gossypium hirsutum HOM05D000540 ORTHO05D008899 9.3e-44 179.9 94 93.6
AL2G20490 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
AL4G23550 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
ATCG00840 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
ATCG01300 Arabidopsis thaliana HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
CARHR282300 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
CARHR282570 Cardamine hirsuta HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 92.6
Gohir.D06G104900 Gossypium hirsutum HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 90.4
Peaxi162Scf00211g00237 Petunia axillaris HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 93.6
RcHm_v2.0_Chr2g0118491 Rosa chinensis HOM05D000540 ORTHO05D008899 3.5e-43 177.9 94 93.6
Gorai.007G229500 Gossypium raimondii HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 91.5
PSO548G0098 Papaver somniferum HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 93.6
PSO548G0119 Papaver somniferum HOM05D000540 ORTHO05D008899 7.8e-43 176.8 94 93.6
Lj4g0015929 Lotus japonicus HOM05D000540 ORTHO05D008899 1.0e-42 176.4 94 91.5
AL2G21780 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 91.5
Gohir.D11G213500 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 90.4
HanXRQChr00c0165g0572201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr00c0368g0574201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr00c0496g0575201 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr00c0572g0575951 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr00c0585g0576271 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr05g0152521 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr10g0284441 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr10g0318001 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr11g0321161 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr13g0416611 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
HanXRQChr15g0488331 Helianthus annuus HOM05D000540 ORTHO05D008899 1.3e-42 176.0 94 92.6
LjContig00318g0005310 Lotus japonicus HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 91.5
LjContig00318g0024355 Lotus japonicus HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 91.5
LjContig00319g0005990 Lotus japonicus HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 91.5
LjContig00319g0017169 Lotus japonicus HOM05D000540 ORTHO05D008899 2.3e-42 175.3 94 91.5
Nitab4.5_0003083g0040 Nicotiana tabacum HOM05D007194 ORTHO05D008899 6.6e-42 173.7 94 91.5
Nn4g25233 Nelumbo nucifera HOM05D000540 ORTHO05D008899 9.6e-41 169.9 94 89.4
Gohir.D04G085766 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.3e-40 169.5 94 86.2
Nitab4.5_0001646g0030 Nicotiana tabacum HOM05D007194 ORTHO05D009182 2.1e-40 168.7 94 88.3
Gohir.D06G105280 Gossypium hirsutum HOM05D000540 ORTHO05D008899 2.8e-40 168.3 94 88.3
Nitab4.5_0020349g0050 Nicotiana tabacum HOM05D000540 ORTHO05D008899 4.8e-40 167.5 94 89.4
Nitab4.5_0002418g0160 Nicotiana tabacum HOM05D007194 ORTHO05D009182 8.1e-40 166.8 92 87.0
Gohir.A12G089000 Gossypium hirsutum HOM05D000540 ORTHO05D008899 1.5e-38 162.5 81 96.3
Migut.D01325 Erythranthe guttata HOM05D000540 ORTHO05D000681 9.9e-38 159.8 82 93.9
CAN.G1468.2 Capsicum annuum HOM05D000540 ORTHO05D008899 1.3e-37 159.5 94 84.0
Peaxi162Scf00483g00319 Petunia axillaris HOM05D000540 ORTHO05D008899 3.8e-37 157.9 81 95.1
CAN.G895.34 Capsicum annuum HOM05D000540 ORTHO05D008899 4.9e-37 157.5 94 84.0
Nitab4.5_0014666g0090 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.1e-36 156.4 94 85.1
HanXRQChr09g0256691 Helianthus annuus HOM05D000540 ORTHO05D008899 1.9e-36 155.6 83 91.6
Lalb_Chr25g0281971 Lupinus albus HOM05D000540 ORTHO05D008899 3.2e-36 154.8 94 79.8
BolSC56t61242H Brassica oleracea HOM05D000540 ORTHO05D008899 5.4e-36 154.1 81 91.4
CAN.G895.33 Capsicum annuum HOM05D000540 ORTHO05D008899 7.1e-36 153.7 94 84.0
HanXRQChr11g0352351 Helianthus annuus HOM05D000540 ORTHO05D000681 1.2e-35 152.9 82 91.5
Sed0012077 Sechium edule HOM05D000540 ORTHO05D008899 1.6e-35 152.5 94 84.0
HanXRQChr00c0349g0573971 Helianthus annuus HOM05D000540 ORTHO05D000681 3.5e-35 151.4 83 89.2
Nitab4.5_0000031g0190 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.6e-35 151.0 81 91.4
Medtr0002s0350 Medicago truncatula HOM05D000540 ORTHO05D008899 7.9e-35 150.2 82 85.4
AL1G45030 Arabidopsis lyrata HOM05D000540 ORTHO05D008899 1.3e-34 149.4 76 93.4
GSVIVG01008706001 Vitis vinifera HOM05D000148 ORTHO05D000081 3.0e-34 148.3 81 87.7
BolC2t10582H Brassica oleracea HOM05D000540 ORTHO05D008899 3.9e-34 147.9 76 92.1
Medtr4g047920 Medicago truncatula HOM05D000540 ORTHO05D000681 4.8e-32 141.0 79 86.1
Nitab4.5_0012158g0050 Nicotiana tabacum HOM05D007194 ORTHO05D009182 4.8e-32 141.0 88 80.7
Medtr4g051430 Medicago truncatula HOM05D000540 ORTHO05D000681 1.4e-31 139.4 79 86.1
CsaV3_2G008470 Cucumis sativus L. HOM05D006248 ORTHO05D007896 4.0e-31 137.9 66 98.5
HanXRQChr13g0413481 Helianthus annuus HOM05D000540 ORTHO05D008899 9.0e-31 136.7 74 90.5
Potri.011G074401 Populus trichocarpa HOM05D000540 ORTHO05D000681 3.4e-30 134.8 66 98.5
HanXRQChr00c0451g0574831 Helianthus annuus HOM05D000540 ORTHO05D008899 9.9e-30 133.3 72 90.3
ClCG00G001570 Citrullus lanatus HOM05D000540 ORTHO05D008899 1.3e-29 132.9 72 88.9
Lsat_1_v5_gn_5_27661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-29 132.9 69 92.8
Lsat_1_v5_gn_7_82661 Lactuca sativa HOM05D000540 ORTHO05D008899 1.3e-29 132.9 69 92.8
GSVIVG01023244001 Vitis vinifera HOM05D000540 ORTHO05D008899 1.7e-29 132.5 82 78.0
Ciclev10010272m.g Citrus clementina HOM05D000540 ORTHO05D008899 4.9e-29 131.0 94 75.5
ClCG10G020130 Citrullus lanatus HOM05D000540 ORTHO05D008899 8.4e-29 130.2 94 71.3
Nitab4.5_0006806g0100 Nicotiana tabacum HOM05D007194 ORTHO05D009182 5.5e-28 127.5 74 83.8
Nn021s41514 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 81.3
Nn145s44091 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 81.3
Nn3g16152 Nelumbo nucifera HOM05D000540 ORTHO05D008899 1.0e-26 123.2 75 81.3
Sopen01g007230 Solanum pennellii HOM05D007194 ORTHO05D009182 3.9e-26 121.3 67 89.6
GSVIVG01010311001 Vitis vinifera HOM05D000540 ORTHO05D008899 5.1e-26 120.9 62 95.2
Migut.D01406 Erythranthe guttata HOM05D000540 ORTHO05D000681 1.3e-24 116.3 73 80.8
Nitab4.5_0000859g0080 Nicotiana tabacum HOM05D000540 ORTHO05D008899 1.4e-23 112.8 61 88.5
HanXRQChr03g0073071 Helianthus annuus HOM05D000540 ORTHO05D008899 6.9e-23 110.5 62 87.1
CSS0035327 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 1.2e-22 109.8 53 96.2
CSS0033691 Camellia sinensis var. sinensis HOM05D000540 ORTHO05D008899 2.0e-22 109.0 73 71.2
HanXRQChr00c0126g0571811 Helianthus annuus HOM05D000540 ORTHO05D000681 4.5e-22 107.8 83 68.7
Peaxi162Scf00525g00033 Petunia axillaris HOM05D000540 ORTHO05D008899 2.9e-21 105.1 62 83.9
Nn1g04854 Nelumbo nucifera HOM05D000540 ORTHO05D008899 3.8e-21 104.8 59 88.1
Nitab4.5_0004376g0180 Nicotiana tabacum HOM05D000540 ORTHO05D008899 5.5e-20 100.9 59 83.1
HanXRQChr00c0512g0575371 Helianthus annuus HOM05D000540 ORTHO05D008899 1.0e-18 96.7 62 82.3
arahy.Tifrunner.gnm1.ann1.LF45NH Arachis hypogaea HOM05D000540 ORTHO05D000681 1.3e-18 96.3 76 68.4
Lalb_Chr13g0292941 Lupinus albus HOM05D000540 ORTHO05D008899 2.3e-18 95.5 56 82.1
PSO357G0279 Papaver somniferum HOM05D000729 ORTHO05D001063 3.9e-18 94.7 82 65.9
Sed0017282 Sechium edule HOM05D000540 ORTHO05D000681 6.7e-18 94.0 44 97.7
Sed0006593 Sechium edule HOM05D000540 ORTHO05D000681 3.3e-17 91.7 44 95.5
Lsat_1_v5_gn_3_85660 Lactuca sativa HOM05D000445 ORTHO05D008899 5.7e-17 90.9 49 87.8
Nn1g08182 Nelumbo nucifera HOM05D000540 ORTHO05D008899 5.7e-17 90.9 49 89.8
vmacro07326 Vaccinium macrocarpon HOM05D003842 ORTHO05D004436 7.4e-17 90.5 61 75.4
HanXRQChr07g0194921 Helianthus annuus HOM05D000540 ORTHO05D008899 2.2e-16 89.0 50 84.0
Gohir.D11G067360 Gossypium hirsutum HOM05D000540 ORTHO05D000681 6.3e-16 87.4 43 93.0
TAR636G2296 Trochodendron aralioides HOM05D000216 ORTHO05D008899 1.1e-15 86.7 44 95.5
CiPaw.06G075700 Carya illinoinensis HOM05D000540 ORTHO05D008899 3.1e-15 85.1 70 65.7
Nitab4.5_0001152g0940 Nicotiana tabacum HOM05D007194 ORTHO05D009182 1.0e-13 80.1 46 82.6
Nn4g25231 Nelumbo nucifera HOM05D000540 ORTHO05D008899 2.9e-13 78.6 37 94.6
BraSC103t45440Z Brassica rapa HOM05D000540 ORTHO05D008899 3.8e-13 78.2 41 92.7
Medtr2g098600 Medicago truncatula HOM05D000540 ORTHO05D008899 1.4e-12 76.3 47 76.6
Oeu062848.1 Olea europaea HOM05D000540 ORTHO05D008899 2.5e-12 75.5 84 51.2
ClCG00G001500 Citrullus lanatus HOM05D000540 ORTHO05D008899 3.6e-11 71.6 37 91.9
EL10Ac9g22727 Beta vulgaris HOM05D000540 ORTHO05D008899 3.0e-10 68.6 41 82.9
CAN.G1690.3 Capsicum annuum HOM05D000540 ORTHO05D000681 1.5e-09 66.2 32 93.8
HanXRQChr00c0533g0575581 Helianthus annuus HOM05D000540 ORTHO05D008899 4.3e-09 64.7 35 91.4
SMO086G0037 Selaginella moellendorffii HOM05D000540 ORTHO05D008899 9.7e-09 63.5 89 39.3
Migut.K00974 Erythranthe guttata HOM05D000540 ORTHO05D000681 2.2e-08 62.4 30 93.3
Cc06_g21660 Coffea canephora HOM05D000540 ORTHO05D008899 5.9e-06 54.3 40 57.5


User provided reference genes

Program Settings