Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G142732 Populus trichocarpa HOM05D000343 ORTHO05D005934 1.3e-117 426.4 220 100.0
Potri.007G049000 Populus trichocarpa HOM05D000343 ORTHO05D005934 4.0e-29 132.5 90 76.7
Manes.12G108600 Manihot esculenta HOM05D000343 ORTHO05D005934 9.8e-28 127.9 90 73.3
Nitab4.5_0001373g0020 Nicotiana tabacum HOM05D000343 ORTHO05D005934 9.8e-28 127.9 231 43.3
CiPaw.01G012700 Carya illinoinensis HOM05D000343 ORTHO05D005934 2.8e-27 126.3 90 71.1
Manes.13G118200 Manihot esculenta HOM05D000343 ORTHO05D005934 2.8e-27 126.3 90 73.3
THA.LOC104804212 Tarenaya hassleriana HOM05D000343 ORTHO05D005934 3.7e-27 125.9 90 72.2
CSS0024485 Camellia sinensis var. sinensis HOM05D000343 ORTHO05D005934 8.3e-27 124.8 90 72.2
Carub.0007s0302 Capsella rubella HOM05D000343 ORTHO05D005934 1.1e-26 124.4 90 72.2
Dinv26868 Davidia involucrata HOM05D000343 ORTHO05D005934 1.1e-26 124.4 90 72.2
AL7G13570 Arabidopsis lyrata HOM05D000343 ORTHO05D005934 3.1e-26 122.9 90 71.1
AT4G37270 Arabidopsis thaliana HOM05D000343 ORTHO05D005934 3.1e-26 122.9 90 71.1
Cfa004063 Carpinus fangiana HOM05D000343 ORTHO05D005934 3.1e-26 122.9 90 70.0
THA.LOC104807601 Tarenaya hassleriana HOM05D000343 ORTHO05D005934 3.1e-26 122.9 90 71.1
Actinidia36461 Actinidia chinensis HOM05D000343 ORTHO05D005934 4.1e-26 122.5 90 71.1
Gohir.A11G220100 Gossypium hirsutum HOM05D000343 ORTHO05D005934 4.1e-26 122.5 90 70.0
Gohir.D11G203500 Gossypium hirsutum HOM05D000343 ORTHO05D005934 4.1e-26 122.5 90 70.0
Gorai.007G218200 Gossypium raimondii HOM05D000343 ORTHO05D005934 4.1e-26 122.5 90 70.0
Oeu013258.1 Olea europaea HOM05D000343 ORTHO05D005934 5.4e-26 122.1 90 70.0
A01p01700 Brassica napus HOM05D000343 ORTHO05D005934 7.0e-26 121.7 90 70.0
C01p01870 Brassica napus HOM05D000343 ORTHO05D005934 7.0e-26 121.7 90 70.0
BolC1t00179H Brassica oleracea HOM05D000343 ORTHO05D005934 7.0e-26 121.7 90 70.0
BraA01t00161Z Brassica rapa HOM05D000343 ORTHO05D005934 7.0e-26 121.7 90 70.0
PSO675G6974 Papaver somniferum HOM05D000343 ORTHO05D005934 7.0e-26 121.7 93 66.7
PGR102G0332 Punica granatum HOM05D000343 ORTHO05D005934 7.0e-26 121.7 90 70.0
COL.COLO4_11485 Corchorus olitorius HOM05D000343 ORTHO05D005934 9.2e-26 121.3 90 70.0
Duzib147G0980 Durio zibethinus HOM05D000343 ORTHO05D005934 9.2e-26 121.3 90 70.0
Sp7g34930 Schrenkiella parvula HOM05D000343 ORTHO05D005934 1.2e-25 120.9 90 68.9
CARHR245650 Cardamine hirsuta HOM05D000343 ORTHO05D005934 1.6e-25 120.6 90 68.9
FAN23G0436 Fragaria x ananassa HOM05D000343 ORTHO05D005934 1.6e-25 120.6 90 70.0
FAN28G2108 Fragaria x ananassa HOM05D000343 ORTHO05D005934 1.6e-25 120.6 90 70.0
FAN28G2712 Fragaria x ananassa HOM05D000343 ORTHO05D005934 1.6e-25 120.6 90 70.0
TWI73G1114 Tripterygium wilfordii HOM05D000343 ORTHO05D005934 1.6e-25 120.6 90 68.9
BcaNung02533 Brassica carinata HOM05D000343 ORTHO05D005934 2.0e-25 120.2 90 68.9
Haze_15349 Corylus avellana HOM05D000343 ORTHO05D005934 2.0e-25 120.2 90 68.9
Thhalv10024415m.g Eutrema salsugineum HOM05D000343 ORTHO05D005934 2.0e-25 120.2 90 68.9
Glyma.05G098800 Glycine max HOM05D000343 ORTHO05D005934 2.0e-25 120.2 90 67.8
Aa31LG6G14140 Aethionema arabicum HOM05D002788 ORTHO05D005934 2.7e-25 119.8 90 70.0
Eucgr.H02227 Eucalyptus grandis HOM05D000343 ORTHO05D005934 2.7e-25 119.8 90 67.8
Atru.chr3.248 Acer truncatum HOM05D000343 ORTHO05D005934 3.5e-25 119.4 90 68.9
Cpa.g.sc6.97 Carica papaya HOM05D000343 ORTHO05D005934 3.5e-25 119.4 90 70.0
Lalb_Chr16g0388921 Lupinus albus HOM05D000343 ORTHO05D005934 3.5e-25 119.4 90 66.7
MD02G1179100 Malus domestica HOM05D000343 ORTHO05D005934 3.5e-25 119.4 90 70.0
Medtr4g094985 Medicago truncatula HOM05D000343 ORTHO05D005934 4.5e-25 119.0 90 66.7
Nn5g30422 Nelumbo nucifera HOM05D000343 ORTHO05D005934 4.5e-25 119.0 90 68.9
Aqoxy5G01142 Aquilegia oxysepala HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 67.8
CANSAT25G2437 Cannabis sativa HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 68.9
Carub.0004s0249 Capsella rubella HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 70.0
FvH4_1g16780 Fragaria vesca HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 68.9
FAN19G1868 Fragaria x ananassa HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 68.9
FAN26G1628 Fragaria x ananassa HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 68.9
Thecc.01G063500 Theobroma cacao HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 67.8
TPR.G23881 Trifolium pratense HOM05D000343 ORTHO05D005934 5.9e-25 118.6 90 65.6
TAR628G0541 Trochodendron aralioides HOM05D000343 ORTHO05D005934 5.9e-25 118.6 378 31.2
EL10Ac6g15688 Beta vulgaris HOM05D000343 ORTHO05D005934 7.8e-25 118.2 90 66.7
Dinv30035 Davidia involucrata HOM05D000343 ORTHO05D005934 7.8e-25 118.2 90 67.8
Prupe.6G228900 Prunus persica HOM05D000343 ORTHO05D005934 7.8e-25 118.2 90 68.9
RcHm_v2.0_Chr2g0106681 Rosa chinensis HOM05D000343 ORTHO05D005934 7.8e-25 118.2 90 68.9
PSO210G4728 Papaver somniferum HOM05D000343 ORTHO05D005934 1.0e-24 117.9 90 67.8
GSVIVG01000217001 Vitis vinifera HOM05D000343 ORTHO05D005934 1.0e-24 117.9 90 66.7
ATR0691G268 Amborella trichopoda HOM05D000343 ORTHO05D005934 1.3e-24 117.5 90 67.8
ClCG02G008150 Citrullus lanatus HOM05D000343 ORTHO05D005934 1.3e-24 117.5 90 68.9
Glyma.17G166800 Glycine max HOM05D000343 ORTHO05D005934 1.3e-24 117.5 90 65.6
unitig_62.g23417 Utricularia gibba HOM05D000343 ORTHO05D005934 1.3e-24 117.5 90 64.4
Psat4g082640 Pisum sativum HOM05D000343 ORTHO05D005934 1.7e-24 117.1 90 65.6
SGA_v2.0_scaffold143G35786 Striga asiatica HOM05D000343 ORTHO05D005934 1.7e-24 117.1 90 66.7
Ca_01077_v3 Cicer arietinum L. HOM05D000343 ORTHO05D005934 2.3e-24 116.7 90 64.4
PSO170G1378 Papaver somniferum HOM05D000343 ORTHO05D005934 2.3e-24 116.7 90 66.7
Sp4g02270 Schrenkiella parvula HOM05D000343 ORTHO05D005934 2.3e-24 116.7 90 68.9
Sed0000005 Sechium edule HOM05D000343 ORTHO05D005934 2.9e-24 116.3 90 67.8
Ciclev10024910m.g Citrus clementina HOM05D000343 ORTHO05D005934 3.8e-24 115.9 90 67.8
Thhalv10000049m.g Eutrema salsugineum HOM05D000343 ORTHO05D005934 3.8e-24 115.9 90 68.9
Lj4A156G48 Lonicera japonica HOM05D000343 ORTHO05D005934 3.8e-24 115.9 90 66.7
vmacro05253 Vaccinium macrocarpon HOM05D000343 ORTHO05D005934 5.0e-24 115.5 90 68.9
Migut.H00391 Erythranthe guttata HOM05D000343 ORTHO05D005934 6.6e-24 115.2 90 65.6
Phvul.003G240100 Phaseolus vulgaris HOM05D000343 ORTHO05D005934 6.6e-24 115.2 90 64.4
Ah.02g125740 Amaranthus hybridus HOM05D000343 ORTHO05D005934 8.6e-24 114.8 90 65.6
AUR62003941 Chenopodium quinoa HOM05D000343 ORTHO05D005934 8.6e-24 114.8 90 65.6
MELO3C024800.2 Cucumis melo HOM05D000343 ORTHO05D005934 8.6e-24 114.8 90 67.8
HanXRQChr16g0529971 Helianthus annuus HOM05D000343 ORTHO05D005934 8.6e-24 114.8 90 64.4
Aa31LG7G13700 Aethionema arabicum HOM05D000343 ORTHO05D005934 1.1e-23 114.4 402 30.6
arahy.Tifrunner.gnm1.ann1.FTH7SR Arachis hypogaea HOM05D000343 ORTHO05D005934 1.1e-23 114.4 98 64.3
ClCG02G007610 Citrullus lanatus HOM05D000343 ORTHO05D005934 1.1e-23 114.4 90 67.8
MELO3C024722.2 Cucumis melo HOM05D000343 ORTHO05D005934 1.1e-23 114.4 90 67.8
CsaV3_2G036100 Cucumis sativus L. HOM05D000343 ORTHO05D005934 1.1e-23 114.4 90 67.8
DCAR_010852 Daucus carota HOM05D000343 ORTHO05D005934 1.1e-23 114.4 90 67.8
Sed0018175 Sechium edule HOM05D000343 ORTHO05D005934 1.9e-23 113.6 90 66.7
CAN.G370.9 Capsicum annuum HOM05D000343 ORTHO05D005934 2.5e-23 113.2 90 64.4
Sopen02g037480 Solanum pennellii HOM05D000343 ORTHO05D005934 2.5e-23 113.2 90 64.4
PGSC0003DMG400024953 Solanum tuberosum HOM05D000343 ORTHO05D005934 2.5e-23 113.2 90 64.4
Lsat_1_v5_gn_4_164080 Lactuca sativa HOM05D000343 ORTHO05D005934 3.3e-23 112.8 90 62.2
Lj4g0009488 Lotus japonicus HOM05D000343 ORTHO05D005934 4.3e-23 112.5 90 61.1
AUR62038256 Chenopodium quinoa HOM05D000343 ORTHO05D005934 5.6e-23 112.1 90 64.4
ECA232G3783 Erigeron canadensis HOM05D000343 ORTHO05D005934 5.6e-23 112.1 90 64.4
Rhsim10G0112400 Rhododendron simsii HOM05D000343 ORTHO05D005934 5.6e-23 112.1 90 67.8
RhsimUnG0202900 Rhododendron simsii HOM05D000343 ORTHO05D005934 5.6e-23 112.1 90 67.8
Hund16367 Selenicereus undatus HOM05D000343 ORTHO05D005934 5.6e-23 112.1 90 64.4
A09p56970 Brassica napus HOM05D000343 ORTHO05D005934 7.3e-23 111.7 90 64.4
BraA09t41089Z Brassica rapa HOM05D000343 ORTHO05D005934 7.3e-23 111.7 90 64.4
Peaxi162Scf00945g00216 Petunia axillaris HOM05D000343 ORTHO05D005934 7.3e-23 111.7 90 64.4
Sabra07G0043700 Salix brachista HOM05D000343 ORTHO05D005934 7.3e-23 111.7 133 51.9
Sc03g0001870 Simmondsia chinensis HOM05D000343 ORTHO05D005934 7.3e-23 111.7 90 64.4
Solyc02g092920.4 Solanum lycopersicum HOM05D000343 ORTHO05D005934 7.3e-23 111.7 90 63.3
CDE01G0174 Ceratophyllum demersum HOM05D000343 ORTHO05D005934 1.2e-22 110.9 90 64.4
C08p39930 Brassica napus HOM05D000343 ORTHO05D005934 1.6e-22 110.5 90 63.3
BolC8t51567H Brassica oleracea HOM05D000343 ORTHO05D005934 1.6e-22 110.5 90 63.3
Cc07_g06460 Coffea canephora HOM05D000343 ORTHO05D005934 1.6e-22 110.5 90 64.4
MSTRG.23712 Avicennia marina HOM05D000343 ORTHO05D005934 2.1e-22 110.2 90 63.3
Os06g0690700 Oryza sativa ssp. japonica HOM05D000343 ORTHO05D005934 4.7e-22 109.0 90 64.4
TAR376G0917 Trochodendron aralioides HOM05D000343 ORTHO05D005934 1.0e-21 107.8 90 65.6
Zm00001eb226120 Zea mays HOM05D000343 ORTHO05D005934 1.0e-21 107.8 90 63.3
SMO353G0387 Selaginella moellendorffii HOM05D000343 ORTHO05D005934 1.8e-21 107.1 88 62.5
SEGI_37969 Sequoiadendron giganteum HOM05D000343 ORTHO05D005934 4.0e-21 105.9 91 58.2
AL4G13170 Arabidopsis lyrata HOM05D000343 ORTHO05D005934 5.2e-21 105.5 90 64.4
Mapoly0043s0122 Marchantia polymorpha HOM05D000343 ORTHO05D005934 5.2e-21 105.5 90 61.1
MD15G1288700 Malus domestica HOM05D000343 ORTHO05D005934 1.5e-20 104.0 84 65.5
Pp3c3_31850 Physcomitrium patens HOM05D000343 ORTHO05D005934 1.5e-20 104.0 88 60.2
Hund13914 Selenicereus undatus HOM05D000343 ORTHO05D005934 2.6e-20 103.2 90 56.7
HPP92_018306 Vanilla planifolia HOM05D000343 ORTHO05D005934 9.8e-20 101.3 90 60.0
HPP92_018309 Vanilla planifolia HOM05D000343 ORTHO05D005934 3.7e-19 99.4 90 58.9
Pp3c4_3060 Physcomitrium patens HOM05D000343 ORTHO05D005934 1.8e-18 97.1 363 30.0
AagrBONN_evm.TU.Sc2ySwM_344.3236 Anthoceros agrestis HOM05D000343 ORTHO05D005934 4.1e-18 95.9 94 53.2
CBR_g41425 Chara braunii HOM05D000343 ORTHO05D005934 7.0e-18 95.1 91 57.1
BcaC07g40992 Brassica carinata HOM05D000343 ORTHO05D005934 1.9e-15 87.0 90 56.7
Sabra05G0113800 Salix brachista HOM05D000343 ORTHO05D005934 6.2e-14 82.0 164 42.1
Oeu009918.2 Olea europaea HOM05D000343 ORTHO05D005934 1.8e-13 80.5 137 46.0
arahy.Tifrunner.gnm1.ann1.VMCJ1G Arachis hypogaea HOM05D000343 ORTHO05D005934 3.1e-13 79.7 88 61.4
AUR62003940 Chenopodium quinoa HOM05D000343 ORTHO05D005934 4.4e-12 75.9 137 44.5
Oeu013257.1 Olea europaea HOM05D000343 ORTHO05D005934 4.4e-12 75.9 137 43.8
SEGI_29643 Sequoiadendron giganteum HOM05D000343 ORTHO05D005934 1.7e-11 73.9 85 55.3
CDE02G0133 Ceratophyllum demersum HOM05D000343 ORTHO05D005934 1.9e-10 70.5 93 52.7
HPP92_027897 Vanilla planifolia HOM05D000343 ORTHO05D005934 4.1e-10 69.3 102 51.0
TAR376G0080 Trochodendron aralioides HOM05D000343 ORTHO05D005934 1.2e-09 67.8 81 59.3
HPP92_026418 Vanilla planifolia HOM05D000343 ORTHO05D005934 1.6e-09 67.4 88 55.7
CARHR292890 Cardamine hirsuta HOM05D000343 ORTHO05D005934 3.9e-08 62.8 75 58.7
MCO03G400 Micromonas commoda HOM05D003324 ORTHO05D005934 6.6e-08 62.0 77 39.0
MCO03G434 Micromonas commoda HOM05D000343 ORTHO05D005934 6.6e-08 62.0 77 39.0
CARHR292870 Cardamine hirsuta HOM05D000343 ORTHO05D005934 1.6e-06 57.4 51 58.8
Lsat_1_v5_gn_5_22041 Lactuca sativa HOM05D000344 ORTHO05D011024 2.1e-06 57.0 52 51.9
PRCOL_00002310 Prasinoderma coloniale HOM05D003324 ORTHO05D005934 4.7e-06 55.8 77 36.4


User provided reference genes

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