Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 1.3e-180 636.3 343 100.0
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 2.8e-162 575.5 372 86.6
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 3.2e-158 562.0 343 90.1
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.1e-147 526.9 342 84.2
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 7.3e-147 524.2 343 84.8
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 4.9e-143 511.5 345 82.6
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 2.4e-142 509.2 344 82.0
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 5.4e-142 508.1 343 80.8
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 7.8e-141 504.2 337 81.3
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 1.7e-140 503.1 343 80.5
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 3.0e-140 502.3 341 80.4
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 8.7e-140 500.7 341 81.2
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 1.1e-139 500.4 341 80.4
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 1.1e-139 500.4 341 80.9
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 6.2e-138 494.6 333 80.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.4e-137 493.4 333 80.5
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 1.8e-137 493.0 341 79.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.8e-137 493.0 343 78.7
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 3.1e-137 492.3 343 78.7
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 5.3e-137 491.5 341 78.0
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 6.9e-137 491.1 335 78.8
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-136 489.2 343 78.1
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.6e-136 489.2 343 78.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.4e-136 488.8 343 78.1
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 5.8e-136 488.0 331 80.7
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 5.8e-136 488.0 340 78.8
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.8e-135 485.3 343 77.6
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 6.4e-135 484.6 345 76.5
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 8.4e-135 484.2 341 76.0
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 8.4e-135 484.2 343 77.0
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 9.3e-134 480.7 345 78.6
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.3e-134 480.7 341 76.8
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 2.1e-133 479.6 343 75.5
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 2.1e-133 479.6 343 76.7
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 2.7e-133 479.2 343 75.8
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.5e-133 478.8 341 76.0
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 2.3e-132 476.1 341 77.1
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.1e-132 474.9 341 75.7
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 2.5e-131 472.6 341 75.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 1.6e-130 469.9 345 74.2
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 2.1e-130 469.5 341 74.8
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 2.8e-130 469.2 335 76.7
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 2.8e-130 469.2 333 77.2
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 3.6e-130 468.8 341 74.8
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 3.6e-130 468.8 341 75.1
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 4.8e-130 468.4 344 73.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.0e-129 465.3 344 73.3
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 5.3e-129 464.9 341 74.5
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 9.0e-129 464.2 345 73.3
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 1.3e-127 460.3 315 78.7
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 1.4e-126 456.8 319 79.9
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 2.4e-126 456.1 343 72.9
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 7.1e-126 454.5 343 74.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 4.6e-125 451.8 345 71.9
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-124 449.9 345 74.2
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 3.9e-124 448.7 345 74.2
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 3.3e-123 445.7 341 72.7
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 2.1e-122 443.0 342 72.8
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 4.8e-122 441.8 340 72.1
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 1.8e-121 439.9 341 70.4
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 2.4e-121 439.5 343 71.4
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 2.6e-120 436.0 341 71.8
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 1.7e-119 433.3 331 72.5
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 2.2e-119 433.0 341 69.5
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 7.1e-118 427.9 345 69.3
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 7.9e-117 424.5 345 71.0
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 5.1e-116 421.8 345 71.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 8.7e-116 421.0 319 74.6
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-115 420.6 345 70.4
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 1.5e-115 420.2 343 70.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 1.3e-114 417.2 342 67.8
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 1.6e-114 416.8 341 70.4
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 6.2e-114 414.8 328 71.6
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.4e-113 413.7 341 68.6
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 1.4e-113 413.7 342 67.5
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.9e-113 411.4 339 67.8
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 7.6e-112 407.9 285 76.8
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.2e-111 406.4 390 62.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 1.1e-110 404.1 345 68.7
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.9e-110 403.3 345 69.3
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 2.1e-109 399.8 345 69.0
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 6.0e-109 398.3 339 66.1
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 1.3e-108 397.1 343 67.3
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 2.4e-105 386.3 334 65.9
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 3.1e-105 386.0 330 64.5
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.5e-104 383.6 341 64.8
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 2.6e-104 382.9 345 62.6
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 1.0e-103 380.9 342 66.4
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 3.8e-103 379.0 343 63.8
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 5.0e-103 378.6 287 71.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.0e-103 378.6 343 64.7
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.0e-103 378.6 343 64.7
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 4.6e-101 372.1 342 62.6
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 2.0e-99 366.7 318 67.0
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 4.3e-99 365.5 343 61.5
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 7.4e-99 364.8 287 70.0
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 7.4e-99 364.8 261 74.3
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 2.2e-98 363.2 344 63.4
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 4.8e-98 362.1 336 62.8
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.8e-97 360.1 323 61.3
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 2.4e-97 359.8 341 61.9
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.4e-97 359.8 336 63.1
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 2.4e-97 359.8 330 62.1
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 1.5e-96 357.1 328 61.0
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 3.4e-96 355.9 343 59.8
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 7.7e-96 354.8 343 60.1
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.7e-95 353.6 350 60.3
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 1.7e-95 353.6 369 58.8
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.5e-94 348.6 348 58.9
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.6e-93 347.1 334 59.9
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.8e-92 343.6 325 60.9
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 2.3e-92 343.2 347 59.1
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 3.7e-90 335.9 322 60.2
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.8e-89 333.6 322 61.2
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 2.0e-88 330.1 341 58.7
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 2.0e-88 330.1 341 58.7
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 7.7e-88 328.2 341 58.4
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 6.5e-87 325.1 341 57.8
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 3.2e-86 322.8 325 60.6
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 4.2e-86 322.4 340 57.4
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.6e-85 320.5 330 58.2
Psat6g005760 Pisum sativum HOM05D001533 ORTHO05D005122 8.0e-85 318.2 292 61.6
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 2.3e-84 316.6 328 58.8
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.3e-82 310.8 287 65.2
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.8e-82 308.9 343 54.2
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 5.3e-81 305.4 324 58.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 2.6e-80 303.1 343 54.2
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.5e-80 302.8 345 54.8
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.9e-79 299.7 328 56.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.1e-78 297.7 323 57.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 1.1e-78 297.7 318 53.1
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 1.1e-78 297.7 308 58.8
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 7.2e-78 295.0 323 56.3
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 6.1e-77 292.0 321 53.6
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.8e-76 290.4 320 55.6
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 1.2e-75 287.7 284 62.0
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.5e-75 287.3 332 54.8
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.4e-73 280.0 302 58.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 9.1e-73 278.1 320 53.8
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 2.0e-72 276.9 208 74.5
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 4.5e-72 275.8 295 58.0
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 5.9e-72 275.4 284 59.9
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 1.7e-71 273.9 325 51.1
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.5e-70 270.8 249 61.8
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 9.4e-70 268.1 329 50.8
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 3.4e-67 259.6 343 48.7
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 7.7e-64 248.4 289 52.2
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 2.5e-62 243.4 286 52.4
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 7.2e-62 241.9 342 40.9
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 2.0e-59 233.8 320 47.5
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 3.4e-59 233.0 338 43.2
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 9.8e-59 231.5 350 46.9
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 2.8e-58 229.9 138 93.5
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.2e-57 226.5 315 48.3
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 2.0e-56 223.8 295 48.1
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 6.1e-53 212.2 343 39.1
BcaNung04499 Brassica carinata HOM05D001533 ORTHO05D005122 1.2e-51 208.0 238 54.6
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 9.8e-51 204.9 225 56.9
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 2.6e-43 180.3 185 54.6
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 4.4e-43 179.5 139 71.9
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 9.8e-43 178.3 172 65.1
HPP92_007128 Vanilla planifolia HOM05D001533 ORTHO05D005122 4.1e-41 172.9 176 58.5
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 2.1e-40 170.6 303 43.2
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 8.9e-36 155.2 280 40.7
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.2e-32 144.8 320 37.8
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 4.7e-29 132.9 291 38.5
unitig_699.g19710 Utricularia gibba HOM05D001533 ORTHO05D005122 6.4e-26 122.5 172 49.4
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 2.7e-24 117.1 280 36.4
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 2.7e-24 117.1 280 36.4
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 7.6e-19 99.0 91 64.8
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 3.0e-15 87.0 55 83.6
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 3.9e-15 86.7 50 92.0
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 8.7e-15 85.5 111 52.3
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.3e-14 83.6 291 31.3
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 3.5e-08 63.5 95 48.4
BcaC04g22938 Brassica carinata HOM05D001533 ORTHO05D019802 4.6e-08 63.2 89 47.2


User provided reference genes

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