Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G083600 Populus trichocarpa HOM05D004947 ORTHO05D006077 0.0e+00 1085.5 567 100.0
Sabra07G0068900 Salix brachista HOM05D004947 ORTHO05D006077 2.8e-228 795.4 598 72.7
Sabra05G0068700 Salix brachista HOM05D004947 ORTHO05D006077 6.4e-164 581.6 384 85.4
Manes.12G141400 Manihot esculenta HOM05D004947 ORTHO05D006077 3.9e-153 545.8 526 56.8
Ciclev10025244m.g Citrus clementina HOM05D004947 ORTHO05D006077 5.2e-150 535.4 545 56.3
QL06p032353 Quercus lobata HOM05D004947 ORTHO05D006077 6.4e-148 528.5 488 59.4
Thecc.01G111600 Theobroma cacao HOM05D004947 ORTHO05D006077 2.1e-146 523.5 553 55.0
TAR625G0980 Trochodendron aralioides HOM05D004947 ORTHO05D006077 3.5e-146 522.7 575 52.3
Cfa002745 Carpinus fangiana HOM05D004947 ORTHO05D006077 4.6e-146 522.3 561 54.5
Potri.007G082100 Populus trichocarpa HOM05D004947 ORTHO05D006077 1.3e-145 520.8 383 76.5
Dinv42703 Davidia involucrata HOM05D004947 ORTHO05D006077 6.6e-145 518.5 577 55.3
Atru.chr4.372 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-143 513.8 496 59.1
Atru.chr4.373 Acer truncatum HOM05D004947 ORTHO05D006077 1.6e-143 513.8 496 59.1
Duzib147G0355 Durio zibethinus HOM05D004947 ORTHO05D006077 1.4e-142 510.8 559 52.8
TAR376G0315 Trochodendron aralioides HOM05D004947 ORTHO05D006077 4.0e-142 509.2 538 53.2
Gohir.D03G045400 Gossypium hirsutum HOM05D004947 ORTHO05D006077 5.8e-141 505.4 570 53.2
Gohir.A02G134000 Gossypium hirsutum HOM05D004947 ORTHO05D006077 1.9e-139 500.4 556 53.2
Gorai.003G046500 Gossypium raimondii HOM05D004947 ORTHO05D006077 2.7e-138 496.5 570 52.6
Prupe.6G175000 Prunus persica HOM05D004947 ORTHO05D006077 7.9e-138 495.0 544 52.8
COL.COLO4_11020 Corchorus olitorius HOM05D004947 ORTHO05D006077 5.1e-137 492.3 551 52.8
Manes.13G077600 Manihot esculenta HOM05D004947 ORTHO05D006077 1.8e-134 483.8 411 63.0
Sc03g0004250 Simmondsia chinensis HOM05D004947 ORTHO05D006077 7.6e-133 478.4 501 54.1
TWI74G1183 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 1.9e-131 473.8 568 50.7
CAN.G1854.1 Capsicum annuum HOM05D004947 ORTHO05D006077 3.2e-131 473.0 502 52.8
Sopen04g023630 Solanum pennellii HOM05D004947 ORTHO05D006077 1.2e-130 471.1 506 52.6
Nitab4.5_0002843g0020 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.7e-130 469.9 497 52.7
RcHm_v2.0_Chr2g0116221 Rosa chinensis HOM05D004947 ORTHO05D006077 2.7e-130 469.9 501 52.3
PGSC0003DMG402012957 Solanum tuberosum HOM05D004947 ORTHO05D006077 1.8e-129 467.2 500 52.6
Peaxi162Scf01006g00315 Petunia axillaris HOM05D004947 ORTHO05D006077 1.1e-128 464.5 480 53.8
Ca_17699_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 1.9e-128 463.8 496 52.8
Nitab4.5_0000156g0160 Nicotiana tabacum HOM05D004947 ORTHO05D006077 2.1e-127 460.3 509 50.3
Solyc04g054170.4 Solanum lycopersicum HOM05D004947 ORTHO05D006077 4.8e-127 459.1 536 49.4
Lalb_Chr11g0068011 Lupinus albus HOM05D004947 ORTHO05D006077 1.8e-126 457.2 556 51.3
CiPaw.03G134900 Carya illinoinensis HOM05D004947 ORTHO05D006077 3.1e-126 456.4 434 57.8
CsaV3_6G045960 Cucumis sativus L. HOM05D004947 ORTHO05D006077 3.1e-126 456.4 496 50.6
MBI03_g11138_MAGBIO Magnolia biondii HOM05D004947 ORTHO05D006077 5.3e-126 455.7 477 53.5
Lj1g0026570 Lotus japonicus HOM05D004947 ORTHO05D006077 1.2e-125 454.5 488 52.3
PGR102G0173 Punica granatum HOM05D004947 ORTHO05D006077 2.0e-125 453.8 568 48.1
TPR.G2194 Trifolium pratense HOM05D004947 ORTHO05D006077 5.8e-125 452.2 545 48.1
TWI53G2111 Tripterygium wilfordii HOM05D004947 ORTHO05D006077 5.8e-125 452.2 554 50.0
CANSAT01G0537 Cannabis sativa HOM05D004947 ORTHO05D006077 3.5e-122 443.0 605 45.0
ClCG01G019270 Citrullus lanatus HOM05D004947 ORTHO05D006077 7.9e-122 441.8 539 47.5
FAN28G2993 Fragaria x ananassa HOM05D004947 ORTHO05D006077 1.3e-121 441.0 539 49.2
Lsat_1_v5_gn_2_65461 Lactuca sativa HOM05D004947 ORTHO05D006077 3.9e-121 439.5 492 49.2
arahy.Tifrunner.gnm1.ann1.XRAY4T Arachis hypogaea HOM05D004947 ORTHO05D006077 1.5e-120 437.6 501 50.9
Cc07_g16050 Coffea canephora HOM05D004947 ORTHO05D006077 2.5e-120 436.8 497 50.1
PSO675G5310 Papaver somniferum HOM05D004947 ORTHO05D006077 3.3e-120 436.4 471 51.8
HanXRQChr14g0446211 Helianthus annuus HOM05D004947 ORTHO05D006077 7.4e-120 435.3 569 47.5
arahy.Tifrunner.gnm1.ann1.V2ZAQJ Arachis hypogaea HOM05D004947 ORTHO05D006077 9.6e-120 434.9 501 50.7
SGA_v2.0_scaffold47G17714 Striga asiatica HOM05D004947 ORTHO05D006077 1.3e-119 434.5 568 46.0
vmacro12909 Vaccinium macrocarpon HOM05D004947 ORTHO05D006077 2.1e-119 433.7 524 49.4
PSO541G1244 Papaver somniferum HOM05D004947 ORTHO05D006077 8.2e-119 431.8 471 50.5
DCAR_014256 Daucus carota HOM05D004947 ORTHO05D006077 1.4e-118 431.0 504 49.2
Aqoxy5G01985_Aqoxy5G01986 Aquilegia oxysepala HOM05D004947 ORTHO05D006077 4.1e-118 429.5 495 50.3
TPR.G6951 Trifolium pratense HOM05D004947 ORTHO05D006077 1.5e-117 427.6 492 49.4
Medtr3g094760 Medicago truncatula HOM05D004947 ORTHO05D006077 2.0e-117 427.2 496 48.8
EL10Ac6g14744 Beta vulgaris HOM05D004947 ORTHO05D006077 2.6e-117 426.8 566 46.5
Migut.L00078 Erythranthe guttata HOM05D004947 ORTHO05D006077 2.6e-117 426.8 480 50.8
Actinidia16961 Actinidia chinensis HOM05D004947 ORTHO05D006077 3.4e-117 426.4 577 48.0
CiPaw.04G092600 Carya illinoinensis HOM05D004947 ORTHO05D006077 1.7e-116 424.1 421 54.9
AUR62003314 Chenopodium quinoa HOM05D004947 ORTHO05D006077 2.2e-116 423.7 568 45.2
Haze_25032 Corylus avellana HOM05D004947 ORTHO05D006077 2.2e-116 423.7 563 50.1
Oeu056486.1 Olea europaea HOM05D004947 ORTHO05D006077 6.5e-116 422.2 474 51.3
SalBow5G4162 Salvia bowleyana HOM05D004947 ORTHO05D006077 6.5e-116 422.2 620 44.4
Glyma.06G145800 Glycine max HOM05D004947 ORTHO05D006077 5.5e-115 419.1 524 47.5
Ca_16888_v3 Cicer arietinum L. HOM05D004947 ORTHO05D006077 7.2e-115 418.7 495 49.5
HanXRQChr15g0471901 Helianthus annuus HOM05D004947 ORTHO05D006077 6.1e-114 415.6 488 49.0
MD01G1017700 Malus domestica HOM05D004947 ORTHO05D006077 1.3e-113 414.5 577 44.9
THA.LOC104818481 Tarenaya hassleriana HOM05D004947 ORTHO05D006077 1.8e-113 414.1 492 49.0
FAN23G3004 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.9e-113 412.9 611 45.5
Nn1g00054 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.4e-110 404.4 434 53.7
Ah.02g124420 Amaranthus hybridus HOM05D004947 ORTHO05D006077 1.8e-110 404.1 511 47.2
Hund19664 Selenicereus undatus HOM05D004947 ORTHO05D006077 5.3e-110 402.5 600 45.0
Rhsim10G0151500 Rhododendron simsii HOM05D004947 ORTHO05D006077 6.9e-110 402.1 632 41.9
Phvul.009G140300 Phaseolus vulgaris HOM05D004947 ORTHO05D006077 2.2e-108 397.1 527 45.9
Sed0009808 Sechium edule HOM05D004947 ORTHO05D006077 2.5e-107 393.7 436 49.8
SHI11672 Sapria himalayana HOM05D004947 ORTHO05D006077 7.2e-107 392.1 480 48.5
FvH4_1g24620 Fragaria vesca HOM05D004947 ORTHO05D006077 1.2e-106 391.3 559 44.4
FAN26G0674 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.6e-106 389.8 550 44.5
CDE05G2725 Ceratophyllum demersum HOM05D004947 ORTHO05D006077 6.1e-106 389.0 494 45.5
Lj4A878G34 Lonicera japonica HOM05D004947 ORTHO05D006077 6.1e-106 389.0 411 53.5
Sp2g28010 Schrenkiella parvula HOM05D004947 ORTHO05D006077 1.8e-105 387.5 491 44.6
Eucgr.H04830 Eucalyptus grandis HOM05D004947 ORTHO05D006077 1.1e-104 384.8 415 51.1
ECA238G1011 Erigeron canadensis HOM05D004947 ORTHO05D006077 9.7e-104 381.7 495 46.3
unitig_88.g27735 Utricularia gibba HOM05D004947 ORTHO05D006077 1.7e-103 380.9 519 44.1
FAN19G2885 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.7e-103 379.8 559 43.5
Psat7g052040 Pisum sativum HOM05D004947 ORTHO05D006077 2.9e-100 370.2 362 53.0
Psat5g067160 Pisum sativum HOM05D004947 ORTHO05D006077 6.5e-100 369.0 456 47.4
ATR0171G039 Amborella trichopoda HOM05D004947 ORTHO05D006077 3.2e-99 366.7 501 43.9
MELO3C007803.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.7e-98 363.6 487 44.1
BcaB02g09842 Brassica carinata HOM05D004947 ORTHO05D006077 3.6e-98 363.2 489 43.6
A06p31700 Brassica napus HOM05D004947 ORTHO05D006077 3.0e-97 360.1 562 42.9
Aa31LG1G17040 Aethionema arabicum HOM05D004947 ORTHO05D006077 5.1e-97 359.4 493 42.8
HPP92_005876 Vanilla planifolia HOM05D004947 ORTHO05D006077 8.8e-97 358.6 467 43.3
BraA06t26105Z Brassica rapa HOM05D004947 ORTHO05D006077 2.6e-96 357.1 562 42.7
BcaC01g02724 Brassica carinata HOM05D004947 ORTHO05D006077 7.4e-96 355.5 563 42.5
C03p61260 Brassica napus HOM05D004947 ORTHO05D006077 7.4e-96 355.5 563 42.5
BolC3t18387H Brassica oleracea HOM05D004947 ORTHO05D006077 1.7e-95 354.4 559 42.2
CARHR293840 Cardamine hirsuta HOM05D004947 ORTHO05D006077 1.8e-94 350.9 484 43.4
Thhalv10003912m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 7.7e-93 345.5 576 42.2
GSVIVG01022215001 Vitis vinifera HOM05D004947 ORTHO05D006077 1.0e-92 345.1 375 54.9
Zm00001eb364640 Zea mays HOM05D004947 ORTHO05D006077 5.0e-92 342.8 462 42.4
MELO3C007802.2 Cucumis melo HOM05D004947 ORTHO05D006077 2.5e-91 340.5 494 43.3
Carub.0008s2576 Capsella rubella HOM05D004947 ORTHO05D006077 6.1e-90 335.9 482 41.1
Os02g0770100 Oryza sativa ssp. japonica HOM05D004947 ORTHO05D006077 3.3e-88 330.1 481 40.3
AUR62016269 Chenopodium quinoa HOM05D004947 ORTHO05D006077 5.7e-88 329.3 471 44.2
AL8G42430 Arabidopsis lyrata HOM05D004947 ORTHO05D006077 1.8e-86 324.3 485 41.4
BcaB04g20000 Brassica carinata HOM05D004947 ORTHO05D006077 2.4e-86 323.9 495 40.4
AT5G64930 Arabidopsis thaliana HOM05D004947 ORTHO05D006077 3.2e-83 313.5 562 37.0
QL93p0275_0011 Quercus lobata HOM05D004947 ORTHO05D006077 1.2e-82 311.6 320 57.2
CSS0010100 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 2.3e-73 280.8 419 46.5
SalBow5G3891 Salvia bowleyana HOM05D004947 ORTHO05D006077 3.0e-73 280.4 233 59.2
Thhalv10019768m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 3.7e-63 246.9 498 35.7
FvH4_1g22140 Fragaria vesca HOM05D004947 ORTHO05D006077 3.7e-63 246.9 391 44.8
CSS0029975 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 1.4e-62 245.0 292 52.7
FAN23G2837 Fragaria x ananassa HOM05D004947 ORTHO05D006077 3.5e-61 240.4 354 43.8
Nn1g05196 Nelumbo nucifera HOM05D004947 ORTHO05D006077 1.2e-53 215.3 266 45.1
VMungo1309G1623 Vigna mungo HOM05D004947 ORTHO05D006077 1.9e-51 208.0 386 39.6
Cpa.g.sc196.3 Carica papaya HOM05D004947 ORTHO05D006077 5.8e-48 196.4 166 57.8
Thhalv10005311m.g Eutrema salsugineum HOM05D004947 ORTHO05D006077 9.8e-48 195.7 236 45.3
Zm00001eb193490 Zea mays HOM05D004947 ORTHO05D006077 6.0e-45 186.4 321 38.9
VMungo1309G0633 Vigna mungo HOM05D004947 ORTHO05D006077 2.5e-43 181.0 141 61.7
SEGI_09258 Sequoiadendron giganteum HOM05D004947 ORTHO05D006077 2.1e-42 177.9 293 37.9
Mapoly0483s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 3.9e-36 157.1 289 34.3
AagrBONN_evm.TU.Sc2ySwM_228.3588 Anthoceros agrestis HOM05D004947 ORTHO05D006077 1.5e-35 155.2 351 33.0
Mapoly0107s0002 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.5e-35 155.2 403 31.3
Pp3c21_530 Physcomitrium patens HOM05D004947 ORTHO05D006077 3.8e-31 140.6 228 36.4
Pp3c22_5670 Physcomitrium patens HOM05D004947 ORTHO05D006077 8.7e-28 129.4 214 37.4
Mapoly0002s0001 Marchantia polymorpha HOM05D004947 ORTHO05D006077 1.1e-27 129.0 274 31.8
CSS0006585 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-26 124.0 88 62.5
CSS0047108 Camellia sinensis var. sinensis HOM05D004947 ORTHO05D006077 3.6e-26 124.0 88 62.5
SGA_v2.0_scaffold47G17717 Striga asiatica HOM05D004947 ORTHO05D006077 3.6e-26 124.0 133 47.4
FAN28G0567 Fragaria x ananassa HOM05D004947 ORTHO05D006077 4.0e-25 120.6 205 41.5
BcaB02g07604 Brassica carinata HOM05D004947 ORTHO05D006077 2.4e-22 111.3 488 25.4
BcaC08g44843 Brassica carinata HOM05D004947 ORTHO05D006077 6.6e-20 103.2 507 24.1
C06p24500 Brassica napus HOM05D004947 ORTHO05D006077 6.6e-20 103.2 507 24.1
BolC6t37597H Brassica oleracea HOM05D004947 ORTHO05D006077 6.6e-20 103.2 507 24.1
A07p23420 Brassica napus HOM05D004947 ORTHO05D006077 1.5e-19 102.1 499 24.4
BraA07t30005Z Brassica rapa HOM05D004947 ORTHO05D006077 1.5e-19 102.1 499 24.4
Nn5g28924 Nelumbo nucifera HOM05D004947 ORTHO05D006077 4.8e-18 97.1 140 50.0
CBR_g4593 Chara braunii HOM05D004947 ORTHO05D006077 4.0e-17 94.0 310 24.2
Nn1g00055 Nelumbo nucifera HOM05D004947 ORTHO05D006077 2.0e-16 91.7 205 35.1
CBR_g49522 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-14 84.0 267 25.8
FAN26G2475 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.4e-09 68.2 146 45.2
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.5e-08 65.5 55 52.7
FAN19G2927 Fragaria x ananassa HOM05D004947 ORTHO05D006077 2.0e-08 65.1 139 46.0


User provided reference genes

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