Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G069700 Populus trichocarpa HOM05D008822 ORTHO05D050460 0.0e+00 1969.9 1032 100.0
Sabra05G0056800 Salix brachista HOM05D001094 ORTHO05D050460 9.1e-92 342.8 519 47.4
CiPaw.03G044500 Carya illinoinensis HOM05D015316 ORTHO05D003990 1.7e-13 82.8 452 26.5
Cfa020037 Carpinus fangiana HOM05D015316 ORTHO05D003990 3.8e-13 81.6 667 23.7
Sopen10g027670 Solanum pennellii HOM05D000651 ORTHO05D003990 4.2e-12 78.2 94 41.5
TWI79G0768 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 4.2e-12 78.2 545 25.7
Cpa.g.sc37.25 Carica papaya HOM05D008822 ORTHO05D003990 9.3e-12 77.0 458 23.8
Sopen10g027660 Solanum pennellii HOM05D000002 ORTHO05D003990 9.3e-12 77.0 94 41.5
PGSC0003DMG401006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 1.6e-11 76.3 107 35.5
Sopen10g027700 Solanum pennellii HOM05D000651 ORTHO05D003990 2.1e-11 75.9 118 38.1
Haze_20167 Corylus avellana HOM05D015316 ORTHO05D003990 2.7e-11 75.5 794 23.3
RcHm_v2.0_Chr7g0206321 Rosa chinensis HOM05D015272 ORTHO05D022694 2.7e-11 75.5 177 34.5
CSS0033557 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.6e-11 74.7 141 34.8
CSS0042277 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.6e-11 74.7 141 34.8
Cpa.g.sc37.24 Carica papaya HOM05D008822 ORTHO05D003990 4.6e-11 74.7 371 25.3
PGSC0003DMG402006007 Solanum tuberosum HOM05D000651 ORTHO05D003990 4.6e-11 74.7 108 36.1
Dinv07655 Davidia involucrata HOM05D000651 ORTHO05D003990 7.9e-11 73.9 120 39.2
THA.LOC104800215 Tarenaya hassleriana HOM05D008822 ORTHO05D003990 1.0e-10 73.6 485 25.6
CAN.G698.4 Capsicum annuum HOM05D000651 ORTHO05D003990 2.3e-10 72.4 123 34.1
arahy.Tifrunner.gnm1.ann1.34Z3BG Arachis hypogaea HOM05D000651 ORTHO05D003990 3.0e-10 72.0 195 32.8
arahy.Tifrunner.gnm1.ann1.1CZ7RW Arachis hypogaea HOM05D000651 ORTHO05D003990 3.9e-10 71.6 88 42.0
DCAR_007298 Daucus carota HOM05D008822 ORTHO05D003990 6.7e-10 70.9 136 36.0
Nitab4.5_0007359g0040 Nicotiana tabacum HOM05D000651 ORTHO05D003990 6.7e-10 70.9 115 41.7
AT5G08780 Arabidopsis thaliana HOM05D008822 ORTHO05D003990 1.1e-09 70.1 143 35.0
Prupe.5G053600 Prunus persica HOM05D015272 ORTHO05D003990 1.1e-09 70.1 262 28.6
QL10p040527 Quercus lobata HOM05D015316 ORTHO05D003990 1.1e-09 70.1 168 36.3
Sopen11g008640 Solanum pennellii HOM05D000651 ORTHO05D003990 1.9e-09 69.3 107 34.6
arahy.Tifrunner.gnm1.ann1.DY9A0E Arachis hypogaea HOM05D000651 ORTHO05D003990 2.5e-09 68.9 206 32.5
Sopen11g008610 Solanum pennellii HOM05D000651 ORTHO05D003990 2.5e-09 68.9 107 35.5
arahy.Tifrunner.gnm1.ann1.7T6UUP Arachis hypogaea HOM05D000651 ORTHO05D003435 3.3e-09 68.6 206 32.0
Lj4g0023305 Lotus japonicus HOM05D000651 ORTHO05D003990 3.3e-09 68.6 130 32.3
AUR62032767 Chenopodium quinoa HOM05D008822 ORTHO05D003990 4.3e-09 68.2 91 40.7
ECA246G2591 Erigeron canadensis HOM05D000651 ORTHO05D003990 4.3e-09 68.2 122 38.5
BcaB08g37226 Brassica carinata HOM05D008822 ORTHO05D003990 5.6e-09 67.8 73 49.3
Actinidia04066 Actinidia chinensis HOM05D000896 ORTHO05D000594 7.4e-09 67.4 203 28.1
Carub.0006s0775 Capsella rubella HOM05D008822 ORTHO05D003990 7.4e-09 67.4 156 35.9
Cc11_g08580 Coffea canephora HOM05D000651 ORTHO05D003990 7.4e-09 67.4 88 39.8
Glyma.07G218500 Glycine max HOM05D000651 ORTHO05D003990 1.6e-08 66.2 109 41.3
PGR042G3954 Punica granatum HOM05D000651 ORTHO05D003990 1.6e-08 66.2 344 25.3
Sopen11g008650 Solanum pennellii HOM05D000651 ORTHO05D003990 1.6e-08 66.2 93 36.6
arahy.Tifrunner.gnm1.ann1.58UXC0 Arachis hypogaea HOM05D000651 ORTHO05D003990 2.1e-08 65.9 233 30.5
CARHR204230 Cardamine hirsuta HOM05D008822 ORTHO05D003990 2.1e-08 65.9 157 29.9
Nitab4.5_0007504g0010 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.1e-08 65.9 78 42.3
Solyc11g013580.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.1e-08 65.9 95 35.8
Nitab4.5_0000426g0240 Nicotiana tabacum HOM05D000651 ORTHO05D003990 2.8e-08 65.5 85 40.0
Peaxi162Scf00047g00334 Petunia axillaris HOM05D000651 ORTHO05D003990 2.8e-08 65.5 90 38.9
AL6G19530 Arabidopsis lyrata HOM05D008822 ORTHO05D003990 4.8e-08 64.7 154 35.1
BraA10t44850Z Brassica rapa HOM05D008822 ORTHO05D003990 4.8e-08 64.7 79 44.3
Eucgr.J02425 Eucalyptus grandis HOM05D000651 ORTHO05D003990 6.2e-08 64.3 280 28.9
TAR629G0208 Trochodendron aralioides HOM05D008822 ORTHO05D003990 6.2e-08 64.3 94 40.4
Peaxi162Scf00253g01127 Petunia axillaris HOM05D000651 ORTHO05D003990 8.1e-08 63.9 91 38.5
Phvul.002G094900 Phaseolus vulgaris HOM05D000651 ORTHO05D003990 1.1e-07 63.5 76 47.4
Solyc11g013590.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 1.1e-07 63.5 89 36.0
SGA_v2.0_scaffold39G15180 Striga asiatica HOM05D000651 ORTHO05D003990 1.1e-07 63.5 102 34.3
Sopen10g027720 Solanum pennellii HOM05D000651 ORTHO05D003990 1.4e-07 63.2 173 30.1
arahy.Tifrunner.gnm1.ann1.RG7NZB Arachis hypogaea HOM05D000651 ORTHO05D003990 1.8e-07 62.8 167 33.5
MD06G1045800 Malus domestica HOM05D015272 ORTHO05D003990 2.4e-07 62.4 310 24.8
TPR.G38350 Trifolium pratense HOM05D000651 ORTHO05D003990 2.4e-07 62.4 148 30.4
TWI31G1292 Tripterygium wilfordii HOM05D000651 ORTHO05D003990 2.4e-07 62.4 71 47.9
Medtr1g048840 Medicago truncatula HOM05D000651 ORTHO05D003990 3.1e-07 62.0 79 45.6
A10p28000 Brassica napus HOM05D008822 ORTHO05D003990 4.0e-07 61.6 126 34.1
CSS0020544 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.0e-07 61.6 181 28.7
CSS0022216 Camellia sinensis var. sinensis HOM05D000651 ORTHO05D003990 4.0e-07 61.6 181 28.7
Nitab4.5_0000926g0060 Nicotiana tabacum HOM05D000651 ORTHO05D003990 4.0e-07 61.6 78 41.0
AUR62042685 Chenopodium quinoa HOM05D008822 ORTHO05D003990 5.3e-07 61.2 92 37.0
Psat7g128680 Pisum sativum HOM05D000651 ORTHO05D003990 6.9e-07 60.8 172 29.7
Hund01243 Selenicereus undatus HOM05D008822 ORTHO05D003990 6.9e-07 60.8 125 34.4
Ciclev10015830m.g Citrus clementina HOM05D000651 ORTHO05D003990 9.0e-07 60.5 77 40.3
HanXRQChr15g0476831 Helianthus annuus HOM05D000651 ORTHO05D003990 9.0e-07 60.5 88 36.4
Nitab4.5_0004230g0020 Nicotiana tabacum HOM05D000651 ORTHO05D003990 9.0e-07 60.5 81 38.3
Solyc11g013630.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 9.0e-07 60.5 102 32.4
Glyma.09G108100 Glycine max HOM05D000651 ORTHO05D003990 1.2e-06 60.1 76 40.8
Gohir.D04G187300 Gossypium hirsutum HOM05D000651 ORTHO05D003990 1.2e-06 60.1 96 36.5
TPR.G29102 Trifolium pratense HOM05D000651 ORTHO05D003990 1.2e-06 60.1 80 43.8
Ca_08976_v3 Cicer arietinum L. HOM05D000651 ORTHO05D003990 1.5e-06 59.7 73 43.8
SalBow8G0982 Salvia bowleyana HOM05D008822 ORTHO05D003990 1.5e-06 59.7 221 29.0
C09p68200 Brassica napus HOM05D008822 ORTHO05D003990 2.0e-06 59.3 127 32.3
CiPaw.04G078100 Carya illinoinensis HOM05D015316 ORTHO05D003990 2.0e-06 59.3 306 26.5
SGA_v2.0_scaffold50G18496 Striga asiatica HOM05D008822 ORTHO05D003990 2.0e-06 59.3 65 43.1
Solyc11g013680.1 Solanum lycopersicum HOM05D000651 ORTHO05D003990 2.6e-06 58.9 93 33.3
Sopen04g002810 Solanum pennellii HOM05D000651 ORTHO05D003990 3.4e-06 58.5 97 33.0
Solyc04g007720.3 Solanum lycopersicum HOM05D000651 ORTHO05D003990 4.5e-06 58.2 97 32.0
TPR.G19130 Trifolium pratense HOM05D000651 ORTHO05D003990 4.5e-06 58.2 86 40.7
Gohir.A04G141600 Gossypium hirsutum HOM05D000651 ORTHO05D003990 5.8e-06 57.8 145 31.7
Gorai.012G181100 Gossypium raimondii HOM05D000651 ORTHO05D003990 9.9e-06 57.0 131 32.8


User provided reference genes

Program Settings