Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 2.5e-95 352.8 290 100.0
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 5.5e-71 271.9 322 81.7
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 9.4e-71 271.2 324 81.2
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 2.8e-67 259.6 325 77.8
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 8.0e-62 241.5 345 68.4
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 2.3e-61 240.0 349 67.3
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 1.2e-60 237.7 311 66.9
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 9.8e-60 234.6 324 69.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 6.3e-59 231.9 170 68.8
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.4e-58 229.9 170 67.1
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 7.0e-58 228.4 323 71.2
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 1.6e-57 227.3 339 69.6
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.0e-57 226.9 332 69.6
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.7e-57 226.5 333 69.4
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.3e-56 224.2 311 75.9
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.7e-56 223.8 324 73.5
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 1.7e-56 223.8 324 73.5
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 2.3e-56 223.4 327 74.9
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 6.6e-56 221.9 329 68.1
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 6.6e-56 221.9 329 69.0
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 1.5e-55 220.7 325 72.3
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 1.9e-55 220.3 332 66.9
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 2.5e-55 219.9 326 72.1
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 4.3e-55 219.2 334 65.9
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 5.6e-55 218.8 332 65.1
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 7.3e-55 218.4 171 66.1
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 7.3e-55 218.4 171 65.5
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 7.3e-55 218.4 169 63.3
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 9.5e-55 218.0 171 64.9
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.2e-54 217.6 332 68.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.2e-54 217.6 323 67.5
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 3.6e-54 216.1 356 67.7
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 6.1e-54 215.3 322 71.4
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 2.3e-53 213.4 331 66.5
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 2.3e-53 213.4 171 64.3
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 2.3e-53 213.4 171 63.7
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 3.0e-53 213.0 171 66.1
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.0e-53 212.6 329 70.8
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 6.8e-53 211.8 331 69.8
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 8.9e-53 211.5 169 62.1
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 1.5e-52 210.7 334 65.3
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.5e-52 210.7 333 64.9
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 3.4e-52 209.5 339 69.9
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 7.5e-52 208.4 328 72.3
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 7.5e-52 208.4 327 65.4
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 7.5e-52 208.4 316 73.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 2.9e-51 206.5 349 66.2
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 3.7e-51 206.1 334 65.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 4.9e-51 205.7 170 63.5
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 6.4e-51 205.3 171 63.7
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 6.4e-51 205.3 337 65.0
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 6.4e-51 205.3 337 65.0
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 6.4e-51 205.3 171 64.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 1.4e-50 204.1 170 65.3
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.4e-50 204.1 332 69.6
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 1.4e-50 204.1 336 64.6
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 1.4e-50 204.1 333 67.6
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 2.4e-50 203.4 171 63.2
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 3.2e-50 203.0 170 64.1
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 3.2e-50 203.0 334 69.2
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 5.4e-50 202.2 140 71.4
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 7.0e-50 201.8 341 49.3
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 7.0e-50 201.8 351 63.5
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 9.2e-50 201.4 322 71.4
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 1.2e-49 201.1 328 70.4
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 2.0e-49 200.3 173 62.4
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.7e-49 199.9 170 62.9
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 2.7e-49 199.9 161 64.6
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.7e-49 199.9 170 63.5
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 5.9e-49 198.7 171 63.7
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 1.0e-48 198.0 168 62.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.0e-48 198.0 337 67.4
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 1.7e-48 197.2 169 62.1
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 1.7e-48 197.2 169 62.1
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 1.7e-48 197.2 171 60.2
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 1.7e-48 197.2 345 52.2
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 1.7e-48 197.2 338 67.5
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 2.3e-48 196.8 310 70.6
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 2.3e-48 196.8 139 69.8
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 3.9e-48 196.1 139 69.1
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 8.6e-48 194.9 139 69.1
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 1.1e-47 194.5 139 69.1
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 1.1e-47 194.5 137 67.9
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 1.5e-47 194.1 139 68.3
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.5e-47 194.1 139 69.1
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.5e-47 194.1 139 68.3
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 1.5e-47 194.1 137 68.6
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 4.3e-47 192.6 384 61.7
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 7.3e-47 191.8 382 61.0
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 9.5e-47 191.4 139 69.8
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-46 191.0 139 67.6
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 2.8e-46 189.9 139 67.6
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 4.7e-46 189.1 139 67.6
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 6.2e-46 188.7 139 66.9
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 1.0e-45 188.0 139 66.9
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.0e-45 188.0 161 63.4
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.4e-45 187.6 139 67.6
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 3.1e-45 186.4 146 64.4
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.1e-45 186.4 161 61.5
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 3.1e-45 186.4 161 61.5
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.2e-44 184.5 139 66.9
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 9.8e-44 181.4 139 65.5
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 1.3e-43 181.0 162 58.6
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 1.3e-43 181.0 139 64.7
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 3.7e-43 179.5 160 58.8
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 4.9e-43 179.1 167 56.9
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.2e-41 174.5 139 63.3
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 2.7e-41 173.3 171 54.4
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 4.6e-41 172.6 140 62.1
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 8.6e-40 168.3 326 38.3
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 4.3e-39 166.0 139 61.9
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.2e-38 164.5 139 60.4
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 3.6e-38 162.9 324 38.6
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.1e-37 161.4 186 51.6
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.4e-37 161.0 133 63.9
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 5.2e-37 159.1 150 59.3
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 2.6e-36 156.8 86 84.9
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 3.4e-36 156.4 305 37.7
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 1.0e-32 144.8 284 62.7
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 5.1e-32 142.5 131 57.3
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 4.7e-30 136.0 139 46.8
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 3.3e-23 113.2 146 43.8
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 2.8e-22 110.2 126 47.6
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 4.9e-19 99.4 166 41.0
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 8.1e-14 82.0 41 85.4
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 5.3e-13 79.3 121 41.3
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.9e-13 79.0 70 55.7
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 6.9e-13 79.0 70 55.7
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 2.6e-12 77.0 41 82.9
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 2.9e-11 73.6 77 51.9
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 3.5e-09 66.6 45 66.7


User provided reference genes

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