Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 5.4e-43 177.2 84 100.0
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 6.1e-39 163.7 80 95.0
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 1.4e-38 162.5 78 96.2
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 1.4e-38 162.5 78 96.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.8e-38 162.2 78 96.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.8e-38 162.2 78 96.2
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.8e-38 162.2 78 96.2
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 1.8e-38 162.2 78 96.2
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 2.3e-38 161.8 78 94.9
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 3.0e-38 161.4 78 94.9
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 95.0
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 3.0e-38 161.4 80 92.5
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 90.2
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 90.2
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 90.2
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 4.0e-38 161.0 85 90.6
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 82 90.2
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 4.0e-38 161.0 78 94.9
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 5.2e-38 160.6 78 94.9
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 6.8e-38 160.2 85 90.6
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 6.8e-38 160.2 79 92.4
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 8.9e-38 159.8 82 92.7
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 8.9e-38 159.8 78 93.6
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 1.2e-37 159.5 78 93.6
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 1.2e-37 159.5 79 93.7
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.2e-37 159.5 78 93.6
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 94.9
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 1.5e-37 159.1 81 88.9
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 1.5e-37 159.1 78 93.6
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 2.0e-37 158.7 78 93.6
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 92.3
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 93.6
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 93.6
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 93.6
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 94.9
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.0e-37 158.7 78 94.9
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 2.6e-37 158.3 81 90.1
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 2.6e-37 158.3 78 93.6
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.6e-37 158.3 78 93.6
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 3.4e-37 157.9 78 93.6
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 3.4e-37 157.9 78 93.6
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 3.4e-37 157.9 79 91.1
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 3.4e-37 157.9 78 92.3
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 4.4e-37 157.5 79 92.4
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 4.4e-37 157.5 78 92.3
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 4.4e-37 157.5 78 92.3
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 4.4e-37 157.5 78 92.3
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 4.4e-37 157.5 82 89.0
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 4.4e-37 157.5 78 92.3
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 5.7e-37 157.1 84 85.7
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 5.7e-37 157.1 84 85.7
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.7e-37 157.1 78 92.3
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 7.5e-37 156.8 78 91.0
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 7.5e-37 156.8 78 92.3
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 7.5e-37 156.8 78 92.3
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 7.5e-37 156.8 78 91.0
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 7.5e-37 156.8 78 92.3
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 9.8e-37 156.4 78 92.3
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 9.8e-37 156.4 84 85.7
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 9.8e-37 156.4 78 92.3
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 9.8e-37 156.4 78 91.0
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 1.3e-36 156.0 83 85.5
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-36 156.0 81 92.6
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 92.3
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 91.0
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 1.7e-36 155.6 79 91.1
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 92.3
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 92.3
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 92.3
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 1.7e-36 155.6 78 92.3
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 2.2e-36 155.2 78 91.0
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 2.2e-36 155.2 78 91.0
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.2e-36 155.2 76 93.4
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 2.2e-36 155.2 78 92.3
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 2.2e-36 155.2 75 94.7
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 2.9e-36 154.8 79 89.9
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.9e-36 154.8 79 89.9
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.9e-36 154.8 78 89.7
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.9e-36 154.8 76 94.7
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 2.9e-36 154.8 78 91.0
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.7e-36 154.5 76 92.1
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 3.7e-36 154.5 88 84.1
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 3.7e-36 154.5 78 91.0
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 3.7e-36 154.5 78 91.0
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 3.7e-36 154.5 79 88.6
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.9e-36 154.1 78 92.3
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 4.9e-36 154.1 79 87.3
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 6.4e-36 153.7 79 89.9
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 6.4e-36 153.7 79 89.9
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.4e-35 152.5 79 87.3
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.4e-35 151.8 76 92.1
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 3.2e-35 151.4 75 90.7
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 4.1e-35 151.0 75 93.3
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 4.1e-35 151.0 76 90.8
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 5.4e-35 150.6 76 88.2
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 7.0e-35 150.2 78 87.2
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.0e-35 150.2 77 88.3
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.6e-34 149.1 83 83.1
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 1.6e-34 149.1 83 83.1
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.6e-34 149.1 80 83.8
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 4.6e-34 147.5 88 81.8
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 4.6e-34 147.5 94 77.7
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 4.6e-34 147.5 78 87.2
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 1.3e-33 146.0 79 83.5
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.7e-33 145.6 74 87.8
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 2.3e-33 145.2 79 84.8
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 8.6e-33 143.3 79 84.8
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.5e-32 141.7 74 85.1
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-32 141.7 74 85.1
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.5e-32 141.7 74 85.1
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.5e-32 141.7 74 85.1
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 6.2e-31 137.1 78 78.2
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 3.1e-30 134.8 70 85.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 6.8e-30 133.7 74 81.1
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 5.8e-29 130.6 81 80.2
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.2e-28 128.6 95 66.3
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.1e-27 126.3 68 82.4
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 5.4e-27 124.0 69 76.8
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.2e-26 122.9 65 86.2
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.7e-26 121.7 61 91.8
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.7e-26 121.7 62 90.3
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 1.5e-24 115.9 60 85.0
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 7.3e-24 113.6 67 77.6
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 2.9e-20 101.7 55 87.3
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 3.2e-19 98.2 58 77.6
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 9.2e-19 96.7 48 93.8
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 1.1e-16 89.7 43 90.7
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 1.1e-14 83.2 44 86.4
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 2.4e-14 82.0 48 75.0
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 8.9e-14 80.1 83 49.4
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 2.0e-13 79.0 44 81.8
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 5.8e-13 77.4 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 5.8e-13 77.4 39 82.1
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 7.6e-13 77.0 46 76.1
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-11 73.2 39 84.6
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-11 72.8 37 91.9
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.9e-11 72.4 66 59.1
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.4e-11 72.0 47 76.6
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 5.4e-11 70.9 53 67.9
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 3.9e-09 64.7 38 84.2
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 8.7e-09 63.5 29 89.7
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.5e-08 62.0 38 78.9
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.6e-08 60.1 51 54.9
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 1.8e-06 55.8 29 82.8
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 5.2e-06 54.3 38 76.3


User provided reference genes

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