Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G186400 Populus trichocarpa HOM05D006649 ORTHO05D008754 3.6e-143 511.5 252 100.0
Potri.009G146800 Populus trichocarpa HOM05D006649 ORTHO05D008754 2.1e-119 432.6 255 85.9
Sabra09G0115900 Salix brachista HOM05D006649 ORTHO05D008754 1.5e-117 426.4 255 84.3
Manes.11G159300 Manihot esculenta HOM05D006649 ORTHO05D008754 1.3e-97 360.1 255 75.7
Manes.04G006800 Manihot esculenta HOM05D006649 ORTHO05D008754 9.3e-91 337.4 240 72.1
Prupe.6G122700 Prunus persica HOM05D006649 ORTHO05D008754 1.1e-88 330.5 229 73.8
MD11G1159700 Malus domestica HOM05D006649 ORTHO05D008754 5.6e-88 328.2 236 73.3
Thecc.09G288800 Theobroma cacao HOM05D006649 ORTHO05D008754 5.6e-88 328.2 255 71.0
Sabra04G0125600 Salix brachista HOM05D006649 ORTHO05D008754 4.8e-87 325.1 174 92.5
Lj3g0022718 Lotus japonicus HOM05D006649 ORTHO05D008754 6.9e-86 321.2 238 68.1
Nn6g35002 Nelumbo nucifera HOM05D006649 ORTHO05D008754 1.2e-85 320.5 239 69.9
TWI79G0266 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.0e-85 319.7 234 72.2
TWI79G0985 Tripterygium wilfordii HOM05D006649 ORTHO05D008754 2.0e-85 319.7 234 72.2
Atru.chr3.3344 Acer truncatum HOM05D006649 ORTHO05D008754 2.6e-85 319.3 232 72.8
FAN25G2701 Fragaria x ananassa HOM05D006649 ORTHO05D008754 3.4e-85 318.9 229 72.1
Rhsim13G0107300 Rhododendron simsii HOM05D006649 ORTHO05D008754 5.8e-85 318.2 236 68.2
QL01p013359 Quercus lobata HOM05D006649 ORTHO05D008754 1.3e-84 317.0 172 88.4
PSO384G2883 Papaver somniferum HOM05D006649 ORTHO05D008754 1.7e-84 316.6 239 69.5
RcHm_v2.0_Chr5g0043851 Rosa chinensis HOM05D006649 ORTHO05D008754 1.7e-84 316.6 229 69.9
GSVIVG01031373001 Vitis vinifera HOM05D006649 ORTHO05D008754 8.4e-84 314.3 176 85.2
TAR633G2780 Trochodendron aralioides HOM05D006649 ORTHO05D008754 1.4e-83 313.5 237 69.2
Lsat_1_v5_gn_1_62060 Lactuca sativa HOM05D006649 ORTHO05D008754 1.9e-83 313.2 235 69.8
Glyma.12G086800 Glycine max HOM05D006649 ORTHO05D008754 3.2e-83 312.4 232 71.1
Hma1.2p1_0695F.1_g204540 Hydrangea macrophylla HOM05D006649 ORTHO05D008754 3.2e-83 312.4 234 67.5
vmacro03292 Vaccinium macrocarpon HOM05D006649 ORTHO05D008754 4.2e-83 312.0 248 66.1
Phvul.011G091000 Phaseolus vulgaris HOM05D006649 ORTHO05D008754 5.5e-83 311.6 233 68.2
Haze_23431 Corylus avellana HOM05D006649 ORTHO05D008754 7.1e-83 311.2 179 84.9
Duzib170G0763 Durio zibethinus HOM05D006649 ORTHO05D008754 7.1e-83 311.2 263 62.4
AUR62009801 Chenopodium quinoa HOM05D006649 ORTHO05D008754 1.2e-82 310.5 249 66.7
TPR.G15571 Trifolium pratense HOM05D006649 ORTHO05D008754 1.2e-82 310.5 230 70.0
CiPaw.13G139500 Carya illinoinensis HOM05D006649 ORTHO05D008754 3.5e-82 308.9 165 88.5
Ca_19382_v3 Cicer arietinum L. HOM05D006649 ORTHO05D008754 6.0e-82 308.1 246 65.9
Gohir.D05G085700 Gossypium hirsutum HOM05D006649 ORTHO05D008754 7.9e-82 307.8 235 69.4
PGR119G1752 Punica granatum HOM05D006649 ORTHO05D008754 1.0e-81 307.4 245 66.1
Gohir.A05G082800 Gossypium hirsutum HOM05D006649 ORTHO05D008754 1.8e-81 306.6 233 69.1
Actinidia24190 Actinidia chinensis HOM05D006649 ORTHO05D008754 2.3e-81 306.2 176 83.0
Gorai.009G087400 Gossypium raimondii HOM05D000146 ORTHO05D000178 2.3e-81 306.2 235 68.9
PSO339G3959 Papaver somniferum HOM05D006649 ORTHO05D008754 2.3e-81 306.2 175 82.9
VMungo1127G2203 Vigna mungo HOM05D006649 ORTHO05D008754 2.3e-81 306.2 233 67.4
Medtr4g055030 Medicago truncatula HOM05D006649 ORTHO05D008754 3.0e-81 305.8 175 84.0
Hund20864 Selenicereus undatus HOM05D006649 ORTHO05D008754 5.1e-81 305.1 233 70.0
HanXRQChr01g0019741 Helianthus annuus HOM05D006649 ORTHO05D008754 8.7e-81 304.3 250 66.8
Psat7g189840 Pisum sativum HOM05D006649 ORTHO05D008754 1.1e-80 303.9 232 68.5
Nn2g14062 Nelumbo nucifera HOM05D006649 ORTHO05D008754 1.5e-80 303.5 170 85.9
Cfa010067 Carpinus fangiana HOM05D006649 ORTHO05D008754 1.9e-80 303.1 179 83.8
Oeu035544.1 Olea europaea HOM05D006649 ORTHO05D008754 4.3e-80 302.0 230 67.4
Lj2A991T88 Lonicera japonica HOM05D006649 ORTHO05D008754 8.2e-79 297.7 236 68.2
Eucgr.J00458 Eucalyptus grandis HOM05D006649 ORTHO05D008754 1.1e-78 297.4 252 62.7
Lalb_Chr19g0136681 Lupinus albus HOM05D006649 ORTHO05D008754 1.4e-78 297.0 242 65.7
Glyma.11G187700 Glycine max HOM05D006649 ORTHO05D008754 2.4e-78 296.2 174 81.0
AUR62039249 Chenopodium quinoa HOM05D006649 ORTHO05D008754 3.1e-78 295.8 174 81.6
Nitab4.5_0009861g0020 Nicotiana tabacum HOM05D006649 ORTHO05D008754 5.3e-78 295.0 217 70.0
arahy.Tifrunner.gnm1.ann1.AS0IPM Arachis hypogaea HOM05D006649 ORTHO05D008754 1.5e-77 293.5 241 63.9
arahy.Tifrunner.gnm1.ann1.WDN5HE Arachis hypogaea HOM05D006649 ORTHO05D008754 1.5e-77 293.5 241 63.9
CsaV3_6G014840 Cucumis sativus L. HOM05D006649 ORTHO05D008754 4.5e-77 292.0 214 71.0
EL10Ac7g15785 Beta vulgaris HOM05D006649 ORTHO05D008754 1.3e-76 290.4 238 65.1
CANSAT54G3044 Cannabis sativa HOM05D006649 ORTHO05D008754 2.9e-76 289.3 164 81.1
CAN.G644.11 Capsicum annuum HOM05D006649 ORTHO05D008754 5.0e-76 288.5 236 64.0
Solyc11g067060.3 Solanum lycopersicum HOM05D006649 ORTHO05D008754 5.0e-76 288.5 223 66.4
Migut.N02505 Erythranthe guttata HOM05D006649 ORTHO05D008754 6.5e-76 288.1 230 65.7
Cc01_g09580 Coffea canephora HOM05D006649 ORTHO05D008754 8.5e-76 287.7 173 78.6
SalBow6G0396 Salvia bowleyana HOM05D006649 ORTHO05D008754 8.5e-76 287.7 170 78.8
DCAR_006154 Daucus carota HOM05D006649 ORTHO05D008754 1.4e-75 287.0 176 76.7
SGA_v2.0_scaffold147G36353 Striga asiatica HOM05D006649 ORTHO05D008754 3.2e-75 285.8 228 67.1
THA.LOC104810902 Tarenaya hassleriana HOM05D006649 ORTHO05D008754 5.5e-75 285.0 247 62.3
COL.COLO4_19946 Corchorus olitorius HOM05D000146 ORTHO05D000178 7.2e-75 284.6 156 86.5
HPP92_013801 Vanilla planifolia HOM05D006649 ORTHO05D008754 4.6e-74 282.0 233 59.7
AT3G44620 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 7.9e-74 281.2 237 62.4
CARHR151530 Cardamine hirsuta HOM05D006649 ORTHO05D008754 1.8e-73 280.0 240 63.3
CSS0006150 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 3.0e-73 279.3 176 77.3
Sc21g0004770 Simmondsia chinensis HOM05D006649 ORTHO05D008754 3.9e-73 278.9 230 62.2
PGSC0003DMG400026546 Solanum tuberosum HOM05D006649 ORTHO05D008754 5.1e-73 278.5 165 79.4
BcaC01g02065 Brassica carinata HOM05D006649 ORTHO05D008754 1.1e-72 277.3 236 64.4
C03p69000 Brassica napus HOM05D006649 ORTHO05D008754 1.1e-72 277.3 236 64.4
BolC3t19153H Brassica oleracea HOM05D006649 ORTHO05D008754 1.1e-72 277.3 236 64.4
Os08g0557400 Oryza sativa ssp. japonica HOM05D006649 ORTHO05D008754 1.5e-72 276.9 166 76.5
A06p21790 Brassica napus HOM05D006649 ORTHO05D008754 2.0e-72 276.6 178 75.8
Carub.0005s1026 Capsella rubella HOM05D006649 ORTHO05D008754 2.0e-72 276.6 238 62.6
Carub.0015s0017 Capsella rubella HOM05D006649 ORTHO05D008754 2.5e-72 276.2 226 65.9
Sopen11g026770 Solanum pennellii HOM05D006649 ORTHO05D008754 4.3e-72 275.4 167 77.8
ATR0820G177 Amborella trichopoda HOM05D006649 ORTHO05D008754 9.7e-72 274.2 170 75.9
BcaB01g01150 Brassica carinata HOM05D006649 ORTHO05D008754 1.3e-71 273.9 244 61.5
Carub.0015s0012 Capsella rubella HOM05D006649 ORTHO05D008754 2.8e-71 272.7 165 78.2
unitig_8.g3286 Utricularia gibba HOM05D006649 ORTHO05D008754 6.3e-71 271.6 192 68.8
BraA06t25266Z Brassica rapa HOM05D006649 ORTHO05D008754 1.1e-70 270.8 179 74.9
Sp5g16580 Schrenkiella parvula HOM05D006649 ORTHO05D008754 1.1e-70 270.8 247 60.3
TPR.G9708 Trifolium pratense HOM05D006649 ORTHO05D008754 9.1e-70 267.7 187 71.7
Nitab4.5_0006735g0030 Nicotiana tabacum HOM05D006649 ORTHO05D008754 3.6e-66 255.8 155 78.1
Aa31LG4G14340 Aethionema arabicum HOM05D006649 ORTHO05D008754 4.7e-66 255.4 286 52.1
CSS0022960 Camellia sinensis var. sinensis HOM05D006649 ORTHO05D008754 2.6e-64 249.6 184 67.9
Actinidia07225 Actinidia chinensis HOM05D006649 ORTHO05D008754 9.7e-64 247.7 193 66.8
Pp3c2_15060 Physcomitrium patens HOM05D006649 ORTHO05D008754 4.8e-63 245.4 169 67.5
Mapoly0056s0130 Marchantia polymorpha HOM05D006649 ORTHO05D008754 7.0e-62 241.5 168 66.7
CBR_g29713 Chara braunii HOM05D006649 ORTHO05D008754 3.2e-59 232.6 175 64.0
CDE08G1146 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 4.2e-59 232.3 210 58.1
SMO356G0095 Selaginella moellendorffii HOM05D006649 ORTHO05D008754 2.1e-58 229.9 173 63.6
MELO3C021441.2 Cucumis melo HOM05D006649 ORTHO05D008754 8.0e-58 228.0 214 58.9
FvH4_3g24360 Fragaria vesca HOM05D006649 ORTHO05D008754 1.8e-54 216.9 185 63.8
ClCG02G022010 Citrullus lanatus HOM05D006649 ORTHO05D008754 3.5e-53 212.6 208 56.7
Zm00001eb339600 Zea mays HOM05D006649 ORTHO05D008754 1.7e-52 210.3 131 74.8
Peaxi162Scf01284g00017 Petunia axillaris HOM05D006649 ORTHO05D008754 2.2e-52 209.9 204 55.9
Zm00001eb382760 Zea mays HOM05D006649 ORTHO05D008754 3.6e-50 202.6 126 74.6
Dinv29440 Davidia involucrata HOM05D006649 ORTHO05D008754 8.3e-47 191.4 111 79.3
Ah.15g095620 Amaranthus hybridus HOM05D006649 ORTHO05D008754 1.1e-46 191.0 116 76.7
Thhalv10002731m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 1.9e-43 180.3 113 74.3
AL5G22760 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 2.7e-42 176.4 113 72.6
AL5G22830 Arabidopsis lyrata HOM05D006649 ORTHO05D008754 2.7e-42 176.4 113 72.6
Cre14.g632767 Chlamydomonas reinhardtii HOM05D006649 ORTHO05D008754 2.0e-40 170.2 188 47.3
Zm00001eb039610 Zea mays HOM05D006649 ORTHO05D008754 2.6e-40 169.9 178 56.2
SEGI_31986 Sequoiadendron giganteum HOM05D006649 ORTHO05D008754 1.3e-39 167.5 154 55.2
Duzib168G0232 Durio zibethinus HOM05D006649 ORTHO05D008754 2.8e-39 166.4 109 75.2
PRCOL_00004711 Prasinoderma coloniale HOM05D006649 ORTHO05D008754 2.8e-39 166.4 178 48.9
Sed0010741 Sechium edule HOM05D006649 ORTHO05D008754 6.3e-39 165.2 175 58.9
COL.COLO4_00685 Corchorus olitorius HOM05D030008 ORTHO05D034598 1.3e-20 104.4 162 36.4
Thhalv10003008m.g Eutrema salsugineum HOM05D006649 ORTHO05D008754 6.2e-18 95.5 130 49.2
CDE06G0522 Ceratophyllum demersum HOM05D006649 ORTHO05D008754 1.7e-15 87.4 57 73.7
Mapoly0054s0048 Marchantia polymorpha HOM05D006649 ORTHO05D023509 3.5e-13 79.7 194 28.9
GSVIVG01023086001 Vitis vinifera HOM05D006649 ORTHO05D008754 1.5e-11 74.3 67 55.2
CBR_g19487 Chara braunii HOM05D006649 ORTHO05D023509 3.6e-10 69.7 169 27.2
Pp3c1_29030 Physcomitrium patens HOM05D006649 ORTHO05D023509 2.3e-09 67.0 178 24.7
AT3G44485 Arabidopsis thaliana HOM05D006649 ORTHO05D008754 8.3e-07 58.5 60 53.3


User provided reference genes

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