Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.3e-82 309.7 154 100.0
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.2e-69 266.5 140 94.3
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 5.0e-63 244.6 152 84.2
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 1.5e-54 216.5 140 75.0
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 2.5e-54 215.7 140 75.0
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 3.3e-54 215.3 150 71.3
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 3.3e-54 215.3 150 71.3
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.0e-52 210.3 140 73.6
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 8.9e-52 207.2 140 72.9
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 1.2e-51 206.8 140 72.9
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 1.5e-51 206.5 140 70.7
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 2.0e-51 206.1 140 70.7
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-51 205.7 140 70.0
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 4.4e-51 204.9 140 67.9
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.4e-51 204.9 140 72.9
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 4.4e-51 204.9 140 68.6
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 7.5e-51 204.1 140 70.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 7.5e-51 204.1 140 72.1
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 7.5e-51 204.1 140 70.7
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 9.8e-51 203.8 141 69.5
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.2e-50 202.6 140 69.3
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 4.9e-50 201.4 140 69.3
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 8.3e-50 200.7 140 67.9
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 1.9e-49 199.5 140 70.0
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 1.9e-49 199.5 140 67.9
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 2.4e-49 199.1 140 69.3
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 3.2e-49 198.7 141 68.1
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 4.1e-49 198.4 140 68.6
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 1.2e-48 196.8 140 67.9
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.6e-48 196.4 140 66.4
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 1.6e-48 196.4 140 67.1
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 2.7e-48 195.7 140 67.9
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 4.6e-48 194.9 140 68.6
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 6.0e-48 194.5 137 67.2
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.3e-47 193.4 140 65.7
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 1.7e-47 193.0 141 69.5
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-47 192.6 140 66.4
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 2.3e-47 192.6 140 67.9
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 3.9e-47 191.8 140 65.7
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 6.6e-47 191.0 140 65.7
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 8.6e-47 190.7 140 66.4
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 1.1e-46 190.3 140 70.0
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.1e-46 190.3 145 66.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.1e-46 190.3 140 65.0
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 1.5e-46 189.9 143 62.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 1.5e-46 189.9 140 67.1
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 1.2e-45 186.8 140 64.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 1.6e-45 186.4 140 64.3
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 2.1e-45 186.0 140 62.1
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 2.8e-45 185.7 140 62.9
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 6.2e-45 184.5 140 63.6
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.4e-44 183.3 140 63.6
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.4e-44 183.3 120 71.7
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.8e-44 183.0 144 71.5
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.8e-44 183.0 140 64.3
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 2.3e-44 182.6 140 65.0
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 4.0e-44 181.8 140 62.1
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 4.0e-44 181.8 138 64.5
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 5.2e-44 181.4 147 61.2
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 6.8e-44 181.0 142 63.4
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 1.2e-43 180.3 140 62.9
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 1.5e-43 179.9 140 62.1
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 4.4e-43 178.3 140 60.7
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 4.4e-43 178.3 140 60.7
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 5.8e-43 177.9 150 62.0
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 5.8e-43 177.9 138 62.3
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 9.8e-43 177.2 140 61.4
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.7e-42 176.4 140 59.3
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 2.2e-42 176.0 139 60.4
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.4e-41 173.3 140 60.7
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 1.9e-41 172.9 121 69.4
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.2e-41 172.2 140 59.3
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 3.2e-41 172.2 126 69.0
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 9.2e-41 170.6 132 61.4
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 9.2e-41 170.6 134 61.9
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.2e-40 170.2 140 58.6
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.6e-40 169.9 140 57.9
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 6.0e-40 167.9 140 58.6
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 7.8e-40 167.5 145 57.9
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 7.8e-40 167.5 148 56.1
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 7.8e-40 167.5 140 57.9
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.0e-39 167.2 148 55.4
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.3e-39 166.8 141 56.7
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.3e-39 166.8 129 62.0
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 6.6e-39 164.5 126 67.5
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 8.6e-39 164.1 140 56.4
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 8.6e-39 164.1 140 57.1
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 1.1e-38 163.7 140 56.4
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.1e-38 163.7 127 62.2
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 1.9e-38 162.9 142 62.0
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 2.5e-38 162.5 140 55.0
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 3.3e-38 162.2 140 55.0
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 7.3e-38 161.0 118 65.3
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 7.3e-38 161.0 151 55.6
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.3e-38 161.0 140 56.4
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 7.3e-38 161.0 140 56.4
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 1.2e-37 160.2 140 54.3
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 2.8e-37 159.1 144 53.5
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 2.8e-37 159.1 140 56.4
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 4.7e-37 158.3 163 50.3
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 4.7e-37 158.3 134 58.2
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 4.7e-37 158.3 134 58.2
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 1.8e-36 156.4 158 51.9
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-36 155.6 134 57.5
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 3.1e-36 155.6 134 57.5
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 4.0e-36 155.2 159 50.9
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 5.2e-36 154.8 150 52.7
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 5.2e-36 154.8 140 52.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.9e-36 154.1 134 56.7
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 1.2e-35 153.7 140 52.1
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 1.2e-35 153.7 140 52.1
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 5.8e-35 151.4 273 36.3
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.4e-33 146.7 190 43.7
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 4.1e-33 145.2 145 52.4
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 7.8e-32 141.0 145 51.7
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.5e-30 136.7 127 53.5
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 7.3e-30 134.4 192 40.6
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 2.4e-28 129.4 140 49.3
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 3.4e-27 125.6 84 70.2
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 3.2e-25 119.0 140 45.7
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 6.2e-21 104.8 142 45.8
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.1e-20 102.4 81 60.5
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 4.0e-20 102.1 81 61.7
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 6.9e-20 101.3 85 55.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 1.3e-18 97.1 85 55.3
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 7.1e-17 91.3 62 66.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 9.3e-17 90.9 81 56.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.5e-16 89.0 85 54.1
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 4.6e-16 88.6 65 64.6
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 2.3e-15 86.3 145 33.1
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 5.1e-15 85.1 93 48.4
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.5e-14 83.6 140 35.7
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.3e-13 80.5 82 48.8
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.8e-12 76.6 55 61.8
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 6.9e-12 74.7 129 35.7
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.5e-11 73.6 134 29.9
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 2.2e-10 69.7 134 29.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 8.4e-10 67.8 49 65.3
SHI22474 Sapria himalayana HOM05D004374 ORTHO05D005430 9.3e-09 64.3 39 69.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.1e-08 63.2 50 56.0
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 6.7e-07 58.2 80 36.2
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 8.7e-07 57.8 45 62.2
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 1.5e-06 57.0 141 28.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 2.5e-06 56.2 76 38.2


User provided reference genes

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