Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 1.8e-287 991.9 496 100.0
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 4.0e-271 937.6 530 89.8
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 5.2e-271 937.2 496 93.8
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 4.0e-255 884.4 496 87.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 7.6e-254 880.2 496 87.3
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 1.4e-252 875.9 496 86.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 2.4e-252 875.2 496 86.7
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.2e-251 872.8 496 86.9
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.2e-251 872.8 496 86.5
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 2.7e-251 871.7 497 85.7
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 3.5e-251 871.3 488 87.1
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 3.5e-251 871.3 496 85.3
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.7e-250 869.0 496 86.1
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 2.3e-250 868.6 494 86.2
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 5.1e-250 867.5 496 85.9
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.5e-249 865.1 496 85.7
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 4.3e-249 864.4 493 85.8
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 5.6e-249 864.0 496 85.7
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 7.4e-249 863.6 496 85.7
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 1.3e-248 862.8 496 84.7
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.4e-247 859.4 496 85.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 1.8e-247 859.0 493 85.0
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 2.0e-246 855.5 495 84.2
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.8e-246 854.0 493 84.6
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 5.5e-244 847.4 496 83.9
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 7.1e-244 847.0 496 82.1
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 1.2e-243 846.3 496 83.7
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 4.6e-243 844.3 493 84.4
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 7.9e-243 843.6 498 83.5
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 7.9e-243 843.6 494 83.2
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-242 842.4 492 84.1
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 3.9e-242 841.3 497 83.3
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 3.9e-242 841.3 492 84.1
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 5.1e-242 840.9 492 83.7
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 5.1e-242 840.9 492 83.9
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 1.5e-241 839.3 496 83.1
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.9e-241 839.0 493 83.4
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.9e-241 839.0 498 83.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.5e-241 838.6 492 83.5
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 2.8e-240 835.1 496 83.1
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 3.7e-240 834.7 494 82.8
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 4.8e-240 834.3 496 82.1
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 6.2e-240 833.9 494 82.0
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 4.0e-239 831.2 493 82.6
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 4.0e-239 831.2 494 82.2
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 4.0e-239 831.2 493 83.6
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.3e-239 830.9 492 82.7
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 6.9e-239 830.5 495 83.2
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 9.0e-239 830.1 496 81.5
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 1.2e-238 829.7 496 82.1
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 1.5e-238 829.3 497 83.3
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.0e-238 828.9 493 81.7
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.6e-238 828.6 492 83.1
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 1.0e-237 826.6 532 78.0
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 2.2e-237 825.5 496 83.7
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 3.8e-237 824.7 496 81.2
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 3.8e-237 824.7 495 82.8
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.1e-236 823.2 495 82.8
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.9e-236 822.4 495 81.8
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 2.5e-236 822.0 507 79.9
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 3.2e-236 821.6 499 80.2
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 3.2e-236 821.6 498 80.7
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 5.5e-236 820.8 488 82.6
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 7.1e-236 820.5 493 81.5
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 9.3e-236 820.1 495 82.4
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 1.6e-235 819.3 493 81.1
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 2.1e-235 818.9 493 81.3
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 2.7e-235 818.5 494 81.8
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 2.7e-235 818.5 494 81.6
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 6.0e-235 817.4 493 80.9
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 6.0e-235 817.4 511 79.5
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 7.9e-235 817.0 495 81.2
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 1.0e-234 816.6 498 79.9
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 2.3e-234 815.5 501 80.6
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 3.9e-234 814.7 490 81.8
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 6.7e-234 813.9 490 80.8
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 8.7e-234 813.5 487 81.9
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 8.7e-234 813.5 494 80.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 1.1e-233 813.1 494 81.2
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 1.1e-233 813.1 493 79.9
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 1.5e-233 812.8 493 80.1
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.5e-233 812.8 497 80.5
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.9e-233 812.4 493 79.9
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 1.9e-233 812.4 480 82.3
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.7e-233 810.8 490 80.4
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 5.7e-233 810.8 490 81.4
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 2.8e-232 808.5 477 83.0
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-232 808.1 490 80.6
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 4.8e-232 807.7 493 79.7
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 4.1e-231 804.7 488 80.1
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 4.1e-231 804.7 498 79.9
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 6.9e-231 803.9 494 80.8
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 9.0e-231 803.5 498 79.1
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 2.6e-230 802.0 492 79.9
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.4e-230 801.6 492 79.5
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 7.6e-230 800.4 490 80.0
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 7.6e-230 800.4 494 79.8
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 2.9e-229 798.5 493 79.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.8e-224 781.9 485 79.6
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 2.9e-221 771.9 485 77.9
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 8.8e-218 760.4 435 85.7
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 9.7e-217 756.9 443 82.2
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 1.7e-216 756.1 514 74.3
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 8.2e-216 753.8 444 83.8
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.4e-215 753.1 492 75.6
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.5e-214 749.6 488 75.6
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 2.3e-210 735.7 492 74.2
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 6.7e-210 734.2 441 80.5
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 2.0e-209 732.6 445 80.9
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.7e-203 712.2 445 81.6
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 3.3e-201 705.3 488 70.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 5.7e-201 704.5 488 70.1
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.3e-200 703.4 440 79.5
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 1.7e-197 693.0 486 71.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 9.4e-196 687.2 389 87.4
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 1.3e-189 666.8 497 69.6
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 4.9e-184 648.3 493 68.8
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 1.1e-183 647.1 405 78.0
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 1.8e-183 646.4 380 83.2
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 7.0e-183 644.4 471 70.9
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 1.2e-179 633.6 382 83.5
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 1.3e-176 623.6 501 67.3
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 3.7e-176 622.1 386 80.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 4.1e-175 618.6 506 61.5
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 3.2e-167 592.4 388 78.1
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 6.4e-160 568.2 462 66.5
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 9.2e-159 564.3 348 80.5
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.5e-145 520.4 530 52.1
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.9e-135 486.9 267 89.5
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 9.3e-119 431.4 466 51.7
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 6.7e-117 425.2 245 84.1
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 2.5e-111 406.8 240 82.5
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.5e-105 386.0 481 48.2
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-104 384.0 228 84.2
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.2e-103 379.4 253 72.7
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-102 377.9 301 65.4
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.6e-102 377.5 238 76.1
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 8.2e-99 365.2 434 48.6
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 1.3e-96 357.8 303 66.3
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.9e-93 346.3 236 72.9
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.7e-91 340.9 313 59.7
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 1.8e-90 337.4 236 71.6
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 3.5e-81 306.6 254 66.1
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 4.0e-61 240.0 160 74.4
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 1.1e-55 221.9 259 50.6
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 1.8e-53 214.5 150 67.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 3.5e-49 200.3 299 44.5
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 6.2e-46 189.5 99 90.9
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.1e-45 188.7 103 86.4
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 2.3e-45 187.6 145 62.1
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 4.4e-44 183.3 151 67.5
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 2.1e-41 174.5 104 82.7
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 6.6e-40 169.5 122 67.2
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 4.4e-36 156.8 140 58.6
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 2.3e-32 144.4 161 50.3
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 1.2e-30 138.7 75 88.0
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 5.2e-29 133.3 79 81.0
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 1.1e-26 125.6 85 72.9
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 2.9e-19 100.9 76 67.1
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 4.6e-17 93.6 93 54.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 7.6e-12 76.3 61 67.2
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 2.9e-11 74.3 46 73.9
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 1.6e-09 68.6 36 83.3
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.5e-09 67.4 51 66.7
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.1e-07 62.4 30 86.7
MELO3C034926.2 Cucumis melo HOM05D002267 ORTHO05D001928 5.6e-07 60.1 38 78.9


User provided reference genes

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