Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G099000 Populus trichocarpa HOM05D006028 ORTHO05D007784 7.2e-212 740.3 380 100.0
Sabra04G0080900 Salix brachista HOM05D006028 ORTHO05D007784 1.7e-165 586.3 382 80.9
Manes.02G069100 Manihot esculenta HOM05D006028 ORTHO05D007784 1.2e-153 547.0 381 73.2
TWI53G1478 Tripterygium wilfordii HOM05D006028 ORTHO05D007784 1.8e-146 523.1 381 71.1
Thecc.04G133100 Theobroma cacao HOM05D006028 ORTHO05D007784 2.4e-146 522.7 382 71.7
Ciclev10011993m.g Citrus clementina HOM05D006028 ORTHO05D007784 2.1e-142 509.6 380 69.7
Prupe.3G142900 Prunus persica HOM05D006028 ORTHO05D007784 1.9e-140 503.1 381 68.5
Cfa007919 Carpinus fangiana HOM05D006028 ORTHO05D007784 3.3e-140 502.3 381 69.3
QL02p051229 Quercus lobata HOM05D006028 ORTHO05D007784 1.3e-139 500.4 380 67.6
CANSAT78G1220 Cannabis sativa HOM05D006028 ORTHO05D007784 1.8e-138 496.5 380 68.2
Gohir.A12G053400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.2e-137 493.8 382 68.1
Gorai.008G055200 Gossypium raimondii HOM05D006028 ORTHO05D007784 2.6e-137 492.7 382 68.6
Gohir.D12G052100 Gossypium hirsutum HOM05D006028 ORTHO05D007784 7.6e-137 491.1 382 68.3
Haze_14158 Corylus avellana HOM05D006028 ORTHO05D007784 9.9e-137 490.7 389 67.4
Atru.chr1.1685 Acer truncatum HOM05D006028 ORTHO05D007784 1.9e-135 486.5 381 68.2
CSS0038458 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 2.1e-134 483.0 381 67.5
CSS0040274 Camellia sinensis var. sinensis HOM05D006028 ORTHO05D007784 2.1e-134 483.0 382 67.5
TAR629G2682 Trochodendron aralioides HOM05D006028 ORTHO05D007784 2.1e-134 483.0 381 66.1
CiPaw.03G061900 Carya illinoinensis HOM05D006028 ORTHO05D007784 1.8e-133 479.9 381 66.4
Duzib138G1322 Durio zibethinus HOM05D006028 ORTHO05D007784 2.5e-132 476.1 382 66.2
GSVIVG01031016001 Vitis vinifera HOM05D006028 ORTHO05D007784 5.6e-132 474.9 381 66.4
COL.COLO4_09340 Corchorus olitorius HOM05D006028 ORTHO05D007784 2.4e-130 469.5 382 66.0
Hma1.2p1_1109F.1_g258060 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 6.9e-130 468.0 382 64.7
Glyma.14G193600 Glycine max HOM05D006028 ORTHO05D007784 9.9e-129 464.2 380 65.8
Glyma.02G226700 Glycine max HOM05D006028 ORTHO05D007784 6.4e-128 461.5 381 65.6
Rhsim10G0067700 Rhododendron simsii HOM05D006028 ORTHO05D007784 1.9e-127 459.9 381 63.0
Actinidia15886 Actinidia chinensis HOM05D006028 ORTHO05D007784 2.1e-126 456.4 381 64.8
Lj2A441T56 Lonicera japonica HOM05D006028 ORTHO05D007784 7.9e-126 454.5 383 64.2
CsaV3_3G020280 Cucumis sativus L. HOM05D006028 ORTHO05D007784 3.9e-125 452.2 381 61.9
PGSC0003DMG400026405 Solanum tuberosum HOM05D006028 ORTHO05D007784 1.1e-124 450.7 381 61.7
Phvul.008G261300 Phaseolus vulgaris HOM05D006028 ORTHO05D007784 7.4e-124 448.0 380 63.7
CAN.G625.27 Capsicum annuum HOM05D006028 ORTHO05D007784 9.6e-124 447.6 381 62.2
VMungo0647G1142 Vigna mungo HOM05D006028 ORTHO05D007784 9.6e-124 447.6 380 64.7
Sopen02g030790 Solanum pennellii HOM05D006028 ORTHO05D007784 1.3e-123 447.2 381 61.2
ECA246G2307 Erigeron canadensis HOM05D006028 ORTHO05D007784 1.6e-123 446.8 381 61.7
Aqoxy4G02499 Aquilegia oxysepala HOM05D006028 ORTHO05D007784 6.2e-123 444.9 383 60.8
RcHm_v2.0_Chr6g0273571 Rosa chinensis HOM05D006028 ORTHO05D007784 2.4e-122 443.0 379 62.8
FvH4_4g11350 Fragaria vesca HOM05D006028 ORTHO05D007784 5.3e-122 441.8 380 62.6
Nitab4.5_0000912g0170 Nicotiana tabacum HOM05D006028 ORTHO05D007784 6.9e-122 441.4 381 61.4
Oeu008432.1 Olea europaea HOM05D006028 ORTHO05D007784 6.9e-122 441.4 381 61.9
MELO3C023751.2 Cucumis melo HOM05D006028 ORTHO05D007784 9.0e-122 441.0 382 61.0
FAN07G0954 Fragaria x ananassa HOM05D006028 ORTHO05D007784 1.0e-120 437.6 380 62.1
LjContig00155g0021894 Lotus japonicus HOM05D006028 ORTHO05D007784 3.8e-120 435.6 384 63.5
Nitab4.5_0004416g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.9e-120 435.3 381 60.4
TPR.G23017 Trifolium pratense HOM05D006028 ORTHO05D007784 2.5e-119 433.0 380 62.9
Lalb_Chr10g0103311 Lupinus albus HOM05D006028 ORTHO05D007784 3.2e-119 432.6 381 63.8
Cc07_g08770 Coffea canephora HOM05D006028 ORTHO05D007784 5.5e-119 431.8 383 59.8
Medtr5g070860 Medicago truncatula HOM05D006028 ORTHO05D007784 1.0e-117 427.6 381 62.7
PGR004G1556 Punica granatum HOM05D006028 ORTHO05D007784 2.3e-117 426.4 380 59.2
Dinv34819 Davidia involucrata HOM05D006028 ORTHO05D007784 8.7e-117 424.5 381 61.9
Eucgr.F02499 Eucalyptus grandis HOM05D006028 ORTHO05D007784 5.7e-116 421.8 353 61.5
AUR62023297 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.3e-115 420.6 384 60.2
Hund13711 Selenicereus undatus HOM05D006028 ORTHO05D007784 1.6e-115 420.2 380 59.5
ClCG05G012120 Citrullus lanatus HOM05D006028 ORTHO05D007784 2.8e-115 419.5 381 60.6
THA.LOC104820944 Tarenaya hassleriana HOM05D006028 ORTHO05D007784 2.8e-115 419.5 383 58.5
Migut.H00221 Erythranthe guttata HOM05D006028 ORTHO05D007784 1.1e-114 417.5 380 59.2
AT2G18410 Arabidopsis thaliana HOM05D006028 ORTHO05D007784 2.4e-114 416.4 383 59.3
HanXRQChr12g0375811 Helianthus annuus HOM05D006028 ORTHO05D007784 9.0e-114 414.5 380 58.9
Lsat_1_v5_gn_3_79681 Lactuca sativa HOM05D006028 ORTHO05D007784 9.0e-114 414.5 381 59.6
vmacro05550 Vaccinium macrocarpon HOM05D006028 ORTHO05D007784 2.0e-113 413.3 382 59.7
EL10Ac2g04560 Beta vulgaris HOM05D006028 ORTHO05D007784 3.4e-113 412.5 380 59.7
Sp3g31820 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.4e-111 407.1 383 57.7
SpUn0030_0010 Schrenkiella parvula HOM05D006028 ORTHO05D007784 1.4e-111 407.1 383 57.7
Carub.0003s3256 Capsella rubella HOM05D006028 ORTHO05D007784 1.9e-111 406.8 383 58.2
AL3G51690 Arabidopsis lyrata HOM05D006028 ORTHO05D007784 3.2e-111 406.0 383 58.5
Thhalv10022737m.g Eutrema salsugineum HOM05D006028 ORTHO05D007784 4.2e-111 405.6 383 57.4
BcaC06g36407 Brassica carinata HOM05D006028 ORTHO05D007784 7.2e-111 404.8 383 56.4
A07p02330 Brassica napus HOM05D006028 ORTHO05D007784 7.2e-111 404.8 387 57.1
arahy.Tifrunner.gnm1.ann1.QNRR2Z Arachis hypogaea HOM05D006028 ORTHO05D007784 2.1e-110 403.3 380 60.3
PSO017G5051 Papaver somniferum HOM05D006028 ORTHO05D007784 4.6e-110 402.1 387 56.3
Aa31LG8G15620 Aethionema arabicum HOM05D006028 ORTHO05D007784 7.9e-110 401.4 382 56.3
BraA07t28024Z Brassica rapa HOM05D006028 ORTHO05D007784 1.0e-109 401.0 387 56.3
AUR62009005 Chenopodium quinoa HOM05D006028 ORTHO05D007784 1.4e-109 400.6 402 57.2
C07p04450 Brassica napus HOM05D006028 ORTHO05D007784 3.9e-109 399.1 387 56.1
arahy.Tifrunner.gnm1.ann1.I9N3Y5 Arachis hypogaea HOM05D006028 ORTHO05D007784 6.7e-109 398.3 380 59.5
PSO478G1932 Papaver somniferum HOM05D006028 ORTHO05D007784 8.8e-109 397.9 386 55.7
BolC7t40839H Brassica oleracea HOM05D006028 ORTHO05D007784 1.1e-108 397.5 387 55.8
MSTRG.17981 Avicennia marina HOM05D006028 ORTHO05D007784 1.3e-107 394.0 384 57.3
CARHR109010 Cardamine hirsuta HOM05D006028 ORTHO05D007784 2.8e-107 392.9 384 56.5
Nn3g17886 Nelumbo nucifera HOM05D006028 ORTHO05D007784 2.8e-107 392.9 383 55.4
SGA_v2.0_scaffold33G13509 Striga asiatica HOM05D006028 ORTHO05D007784 6.3e-107 391.7 382 56.3
MD00G1149900 Malus domestica HOM05D006028 ORTHO05D007784 9.1e-106 387.9 345 60.6
SalBow3G3202 Salvia bowleyana HOM05D006028 ORTHO05D007784 2.0e-105 386.7 399 55.6
Peaxi162Scf00394g00620 Petunia axillaris HOM05D006028 ORTHO05D007784 1.0e-104 384.4 381 57.7
BcaB03g16641 Brassica carinata HOM05D006028 ORTHO05D007784 1.3e-104 384.0 407 53.1
Ah.16g101740 Amaranthus hybridus HOM05D006028 ORTHO05D007784 6.5e-104 381.7 380 55.3
ATR1125G043 Amborella trichopoda HOM05D006028 ORTHO05D007784 5.5e-103 378.6 399 53.4
HPP92_018993 Vanilla planifolia HOM05D006028 ORTHO05D007784 2.2e-99 366.7 385 51.7
Zm00001eb007750 Zea mays HOM05D006028 ORTHO05D007784 2.7e-94 349.7 390 50.3
Os03g0201700 Oryza sativa ssp. japonica HOM05D006028 ORTHO05D007784 1.5e-92 344.0 388 48.5
CDE05G1052 Ceratophyllum demersum HOM05D006028 ORTHO05D007784 4.0e-85 319.3 385 48.8
Sed0006429 Sechium edule HOM05D006028 ORTHO05D007784 5.2e-85 318.9 286 59.1
Sc10g0001120 Simmondsia chinensis HOM05D006028 ORTHO05D007784 3.5e-81 306.2 258 61.2
Ca_05599_v3 Cicer arietinum L. HOM05D006028 ORTHO05D007784 9.4e-79 298.1 317 56.2
Psat0s2922g0040 Pisum sativum HOM05D006028 ORTHO05D007784 8.0e-78 295.0 264 58.7
Hma1.2p1_1109F.1_g258050 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 1.5e-71 274.2 200 68.0
Potri.017G115566 Populus trichocarpa HOM05D006028 ORTHO05D007784 2.5e-71 273.5 166 83.1
Pp3c5_13580 Physcomitrium patens HOM05D006028 ORTHO05D007784 4.0e-69 266.2 394 42.4
Haze_14159 Corylus avellana HOM05D006028 ORTHO05D007784 6.8e-69 265.4 228 64.0
Mapoly0156s0014 Marchantia polymorpha HOM05D006028 ORTHO05D007784 9.8e-68 261.5 393 41.5
SHI29124 Sapria himalayana HOM05D006028 ORTHO05D007784 1.1e-55 221.5 280 46.8
SMO351G0506 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 1.4e-53 214.5 385 39.5
RcHm_v2.0_Chr1g0332721 Rosa chinensis HOM05D006028 ORTHO05D007784 5.2e-53 212.6 179 59.8
QL02p051191 Quercus lobata HOM05D006028 ORTHO05D007784 1.3e-51 208.0 173 64.2
SEGI_33346 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.3e-48 198.0 242 47.1
Solyc02g086100.4 Solanum lycopersicum HOM05D006028 ORTHO05D007784 1.7e-48 197.6 169 65.1
Sabra17G0095800 Salix brachista HOM05D006028 ORTHO05D007784 1.4e-45 188.0 161 69.6
unitig_748.g7283 Utricularia gibba HOM05D006028 ORTHO05D007784 2.3e-45 187.2 382 35.6
Hma1.2p1_1109F.1_g258070 Hydrangea macrophylla HOM05D006028 ORTHO05D007784 6.8e-45 185.7 172 60.5
SMO009G0016 Selaginella moellendorffii HOM05D006028 ORTHO05D007784 2.0e-44 184.1 389 35.7
Gorai.007G000700 Gossypium raimondii HOM05D006028 ORTHO05D007784 5.4e-42 176.0 161 60.9
Gohir.1Z049310 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-39 167.5 189 50.3
Gohir.A09G249300 Gossypium hirsutum HOM05D006028 ORTHO05D007784 1.9e-39 167.5 189 49.7
Cpa.g.sc282.2 Carica papaya HOM05D006028 ORTHO05D007784 7.1e-34 149.1 160 52.5
FAN17G0046 Fragaria x ananassa HOM05D006028 ORTHO05D007784 2.7e-33 147.1 161 51.6
Gohir.A06G000200 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.0e-24 117.1 127 50.4
Gohir.A12G000400 Gossypium hirsutum HOM05D006028 ORTHO05D007784 5.6e-23 112.8 92 62.0
AagrBONN_evm.TU.Sc2ySwM_368.1688 Anthoceros agrestis HOM05D006028 ORTHO05D007784 5.3e-21 106.3 143 48.3
QL02p051195 Quercus lobata HOM05D006028 ORTHO05D007784 4.2e-18 96.7 73 64.4
AagrBONN_evm.TU.Sc2ySwM_368.1687 Anthoceros agrestis HOM05D006028 ORTHO05D007784 9.3e-18 95.5 170 31.2
SEGI_36511 Sequoiadendron giganteum HOM05D006028 ORTHO05D007784 1.3e-14 85.1 88 51.1
Gohir.A01G231820 Gossypium hirsutum HOM05D006028 ORTHO05D007784 3.7e-14 83.6 77 58.4
Nitab4.5_0014016g0010 Nicotiana tabacum HOM05D006028 ORTHO05D007784 4.9e-11 73.2 83 47.0
CBR_g37698 Chara braunii HOM05D006028 ORTHO05D007784 2.7e-09 67.4 440 23.2
Gohir.D03G000201 Gossypium hirsutum HOM05D006028 ORTHO05D048139 4.3e-07 60.1 37 73.0
Gorai.003G000500 Gossypium raimondii HOM05D006028 ORTHO05D048139 4.3e-07 60.1 37 73.0


User provided reference genes

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