Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.1e-235 817.4 415 100.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 9.6e-210 733.4 437 87.0
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 5.6e-202 707.6 402 90.3
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.3e-176 621.3 402 77.6
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.3e-171 605.9 393 79.6
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 6.7e-171 604.4 393 79.4
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.9e-165 586.3 403 74.7
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.2e-164 583.6 400 73.8
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-162 577.0 401 72.6
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 4.4e-162 575.1 404 73.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.3e-161 573.5 404 72.8
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 2.2e-161 572.8 404 72.8
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.8e-161 572.4 401 72.1
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.7e-161 572.0 404 72.5
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.8e-160 569.7 401 71.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.4e-160 569.3 405 73.3
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 7.0e-160 567.8 402 73.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 7.0e-160 567.8 402 73.1
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.2e-159 567.0 402 73.1
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.0e-158 563.9 404 71.5
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.3e-158 563.5 405 72.6
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.7e-158 563.1 404 71.5
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.7e-158 563.1 401 71.8
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 6.5e-158 561.2 400 72.0
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 4.2e-157 558.5 407 71.0
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 4.7e-156 555.1 400 70.0
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 6.1e-156 554.7 402 69.4
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 8.0e-156 554.3 400 69.5
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 1.4e-155 553.5 401 69.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.3e-155 552.7 403 69.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.2e-154 550.4 402 68.9
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 4.4e-154 548.5 400 69.2
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 9.8e-154 547.4 379 73.6
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.7e-153 546.6 397 69.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 2.2e-153 546.2 406 70.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 3.7e-153 545.4 401 69.1
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 3.7e-153 545.4 403 69.2
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 4.8e-153 545.0 403 67.2
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 8.3e-153 544.3 400 69.0
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 8.3e-153 544.3 402 67.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 5.4e-152 541.6 400 68.0
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 9.1e-152 540.8 403 69.0
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 9.1e-152 540.8 400 68.8
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.2e-151 540.4 400 68.2
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.0e-151 539.7 415 67.2
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 4.5e-151 538.5 402 67.4
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 7.7e-151 537.7 396 68.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.1e-149 533.9 433 63.5
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 4.2e-149 531.9 400 66.0
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.2e-148 530.4 403 66.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.6e-148 530.0 402 66.2
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.0e-148 527.7 400 67.5
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 8.0e-148 527.7 400 67.5
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.4e-147 526.9 397 65.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.2e-147 525.0 397 65.7
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 1.2e-146 523.9 402 66.4
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.5e-146 523.5 429 65.0
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.5e-146 523.5 405 67.4
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 1.7e-145 520.0 377 71.4
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 3.7e-145 518.8 360 72.8
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 2.0e-143 513.1 402 63.7
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 2.7e-143 512.7 410 64.4
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 7.7e-143 511.1 402 63.7
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 3.8e-142 508.8 404 65.8
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 6.6e-142 508.1 360 71.4
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 8.6e-142 507.7 420 61.7
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-141 507.3 398 64.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 2.5e-141 506.1 419 62.1
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 9.5e-141 504.2 403 63.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-140 503.8 382 65.2
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 3.6e-140 502.3 422 60.4
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-139 500.7 396 64.1
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 4.0e-139 498.8 365 68.5
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 6.8e-139 498.0 414 62.1
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.0e-138 496.5 403 62.5
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 7.5e-138 494.6 401 65.3
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 6.4e-137 491.5 406 66.3
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 8.3e-137 491.1 406 62.1
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-136 490.3 416 59.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 5.4e-136 488.4 418 59.3
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 7.0e-136 488.0 397 63.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 9.2e-136 487.6 422 59.0
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-135 487.3 403 61.0
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 1.2e-135 487.3 423 58.9
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.0e-135 486.5 404 60.1
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 8.6e-134 481.1 403 59.8
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.0e-131 474.2 404 59.4
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 2.3e-131 473.0 407 59.2
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.1e-131 472.6 403 60.3
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.2e-130 470.7 421 57.7
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.2e-130 470.7 421 57.7
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 3.7e-129 465.7 287 78.0
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 3.7e-129 465.7 421 57.5
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 5.4e-128 461.8 296 76.7
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 7.0e-128 461.5 400 60.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 9.2e-128 461.1 383 62.7
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.6e-127 460.3 286 79.7
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 2.7e-127 459.5 369 61.5
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 4.6e-127 458.8 350 64.6
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.9e-126 455.7 420 57.4
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.7e-124 448.7 351 65.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 6.2e-124 448.4 319 69.6
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.5e-122 441.4 365 64.9
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 7.5e-122 441.4 401 58.6
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 4.9e-121 438.7 401 58.9
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 5.4e-120 435.3 333 67.3
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.5e-119 432.6 385 59.0
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 4.6e-119 432.2 399 58.9
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 6.6e-118 428.3 407 56.8
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.2e-115 418.7 402 54.7
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 2.4e-112 409.8 404 58.2
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.6e-111 407.1 283 70.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.6e-110 401.7 395 53.4
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-107 394.4 402 53.2
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-107 394.4 402 53.0
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 3.8e-105 386.0 406 52.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.7e-102 374.8 322 59.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 8.7e-102 374.8 398 52.8
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.5e-98 364.0 400 51.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 2.2e-97 360.1 322 58.1
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 6.2e-92 342.0 279 61.3
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.8e-91 340.5 279 62.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.3e-91 339.0 279 62.4
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 2.0e-90 337.0 357 50.4
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 5.8e-90 335.5 279 61.6
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-84 317.4 231 66.2
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.6e-84 317.4 279 58.4
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.0e-81 308.1 329 49.5
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.3e-81 307.8 407 46.9
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 3.0e-78 296.6 291 53.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 7.4e-77 292.0 244 60.7
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 4.6e-71 272.7 366 44.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 1.8e-70 270.8 227 60.4
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.5e-66 257.7 163 73.6
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.9e-64 250.8 144 86.8
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 2.4e-59 233.8 280 48.2
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 1.9e-56 224.2 124 90.3
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.4e-54 218.0 126 85.7
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.0e-54 216.9 123 86.2
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.0e-54 216.9 123 86.2
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 4.4e-53 213.0 122 86.1
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 4.8e-52 209.5 124 82.3
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.3e-51 206.1 154 66.2
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.6e-50 204.5 125 80.8
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 4.5e-50 203.0 231 48.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.7e-44 183.3 151 62.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.2e-42 178.3 183 56.8
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 3.5e-42 176.8 470 33.2
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.8e-41 173.3 306 37.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 6.5e-41 172.6 159 57.2
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.5e-41 172.6 110 74.5
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.1e-40 171.8 106 82.1
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 1.5e-40 171.4 102 84.3
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 6.8e-38 162.5 446 31.6
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 1.2e-34 151.8 129 58.9
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 4.5e-34 149.8 99 81.8
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 1.6e-26 124.8 66 93.9
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 2.5e-24 117.5 68 89.7
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 9.5e-24 115.5 118 55.9
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 1.2e-23 115.2 120 50.8
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.3e-17 94.4 178 34.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 2.2e-12 77.8 57 66.7
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.4e-11 75.1 99 48.5
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 6.0e-10 69.7 222 27.5
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 5.2e-06 56.6 73 45.2


User provided reference genes

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