Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G075700 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.2e-207 726.5 428 100.0
Sabra04G0050400 Salix brachista HOM05D004769 ORTHO05D005605 4.9e-185 651.4 439 88.6
Potri.017G144121 Populus trichocarpa HOM05D004769 ORTHO05D005605 1.7e-177 626.3 435 88.3
CiPaw.03G077600 Carya illinoinensis HOM05D004769 ORTHO05D005605 8.5e-153 544.3 451 74.5
Prupe.1G069400 Prunus persica HOM05D004769 ORTHO05D005605 3.6e-151 538.9 438 76.5
Thecc.04G060900 Theobroma cacao HOM05D004769 ORTHO05D005605 1.5e-149 533.5 448 76.3
Dinv19070 Davidia involucrata HOM05D004769 ORTHO05D005605 2.6e-149 532.7 430 77.2
Cpa.g.sc178.7 Carica papaya HOM05D004769 ORTHO05D005605 4.4e-149 531.9 462 73.4
Atru.chr1.1954 Acer truncatum HOM05D004769 ORTHO05D005605 7.7e-146 521.2 433 76.2
Haze_14305 Corylus avellana HOM05D004769 ORTHO05D005605 2.2e-145 519.6 443 73.1
RcHm_v2.0_Chr4g0398571 Rosa chinensis HOM05D004769 ORTHO05D005605 2.2e-145 519.6 430 75.6
CANSAT78G2338 Cannabis sativa HOM05D004769 ORTHO05D005605 5.5e-144 515.0 448 76.6
Cfa007768 Carpinus fangiana HOM05D004769 ORTHO05D005605 1.2e-143 513.8 442 75.3
FvH4_4g06670 Fragaria vesca HOM05D004769 ORTHO05D005605 1.6e-143 513.5 430 74.9
TAR375G0174 Trochodendron aralioides HOM05D004769 ORTHO05D005605 8.0e-143 511.1 442 65.8
MD13G1237000 Malus domestica HOM05D004769 ORTHO05D005605 1.0e-142 510.8 418 76.6
Ca_05772_v3 Cicer arietinum L. HOM05D004769 ORTHO05D005605 1.4e-142 510.4 428 64.5
TWI74G1557 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 5.2e-142 508.4 433 74.1
MD16G1242400 Malus domestica HOM05D004769 ORTHO05D005605 6.8e-142 508.1 412 77.7
PGR042G1215 Punica granatum HOM05D004769 ORTHO05D005605 8.8e-142 507.7 441 73.0
GSVIVG01026312001 Vitis vinifera HOM05D004769 ORTHO05D005605 2.2e-140 503.1 435 71.3
Actinidia35715 Actinidia chinensis HOM05D004769 ORTHO05D005605 2.8e-140 502.7 434 72.4
Cc07_g12960 Coffea canephora HOM05D004769 ORTHO05D005605 6.3e-140 501.5 430 72.8
Sc11g0004750 Simmondsia chinensis HOM05D004769 ORTHO05D005605 6.3e-140 501.5 439 73.8
Lalb_Chr17g0345901 Lupinus albus HOM05D004769 ORTHO05D005605 1.8e-139 500.0 445 73.9
Hma1.2p1_0158F.1_g069800 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 2.4e-139 499.6 437 70.5
Medtr5g077180 Medicago truncatula HOM05D004769 ORTHO05D005605 3.1e-139 499.2 442 73.3
FAN12G3741 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.4e-139 498.4 418 75.1
TWI77G0470 Tripterygium wilfordii HOM05D004769 ORTHO05D005605 1.2e-138 497.3 432 75.5
FAN07G0829 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.9e-138 495.0 432 71.8
Lj4A255T24 Lonicera japonica HOM05D004769 ORTHO05D005605 5.9e-138 495.0 430 71.9
FAN17G2568 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.0e-137 494.2 418 75.1
MBI04_g35346_MAGBIO Magnolia biondii HOM05D004769 ORTHO05D005605 1.7e-137 493.4 439 73.3
FAN22G0974 Fragaria x ananassa HOM05D004769 ORTHO05D005605 8.6e-137 491.1 418 75.1
QL02p060102 Quercus lobata HOM05D004769 ORTHO05D005605 8.6e-137 491.1 530 62.1
TPR.G9995 Trifolium pratense HOM05D004769 ORTHO05D005605 1.1e-136 490.7 441 72.1
Gorai.004G064700 Gossypium raimondii HOM05D004769 ORTHO05D005605 1.2e-135 487.3 430 76.0
VMungo0647G0921 Vigna mungo HOM05D004769 ORTHO05D005605 1.6e-135 486.9 453 72.4
Gohir.D08G062500 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.7e-135 485.3 434 73.5
Phvul.008G239200 Phaseolus vulgaris HOM05D004769 ORTHO05D005605 8.0e-135 484.6 439 74.5
Glyma.02G241900 Glycine max HOM05D004769 ORTHO05D005605 3.0e-134 482.6 489 65.4
Gohir.A08G052900 Gossypium hirsutum HOM05D004769 ORTHO05D005605 4.0e-134 482.3 430 75.1
COL.COLO4_05842 Corchorus olitorius HOM05D004769 ORTHO05D005605 8.9e-134 481.1 428 62.4
Glyma.14G211600 Glycine max HOM05D004769 ORTHO05D005605 1.5e-133 480.3 444 72.7
TAR374G1377 Trochodendron aralioides HOM05D004769 ORTHO05D005605 9.8e-133 477.6 441 68.9
ECA233G3826 Erigeron canadensis HOM05D000002 ORTHO05D000001 4.1e-131 472.2 414 72.5
Lsat_1_v5_gn_8_18601 Lactuca sativa HOM05D004769 ORTHO05D005605 2.0e-130 469.9 423 71.9
EL10Ac6g13916 Beta vulgaris HOM05D004769 ORTHO05D005605 2.7e-130 469.5 456 66.7
arahy.Tifrunner.gnm1.ann1.SAK0JK Arachis hypogaea HOM05D004769 ORTHO05D005605 5.9e-130 468.4 474 68.6
Aqoxy5G00268 Aquilegia oxysepala HOM05D004769 ORTHO05D005605 1.7e-129 466.8 447 64.4
PSO017G5633 Papaver somniferum HOM05D004769 ORTHO05D005605 2.9e-129 466.1 461 66.4
THA.LOC104823824 Tarenaya hassleriana HOM05D004769 ORTHO05D005605 1.1e-128 464.2 432 70.1
Nitab4.5_0000574g0160 Nicotiana tabacum HOM05D004769 ORTHO05D005605 3.3e-128 462.6 442 70.8
Hma1.2p1_0034F.1_g021310 Hydrangea macrophylla HOM05D004769 ORTHO05D005605 5.6e-128 461.8 406 75.4
ClCG01G008650 Citrullus lanatus HOM05D004769 ORTHO05D005605 1.6e-127 460.3 446 67.7
Peaxi162Scf00442g00627 Petunia axillaris HOM05D004769 ORTHO05D005605 1.6e-127 460.3 431 70.5
Sopen04g006720 Solanum pennellii HOM05D004769 ORTHO05D005605 3.6e-127 459.1 434 70.0
Solyc04g014560.4 Solanum lycopersicum HOM05D004769 ORTHO05D005605 1.0e-126 457.6 444 69.1
PGSC0003DMG400023617 Solanum tuberosum HOM05D004769 ORTHO05D005605 2.3e-126 456.4 432 69.2
Sed0006929 Sechium edule HOM05D004769 ORTHO05D005605 4.0e-126 455.7 452 66.6
AUR62017457 Chenopodium quinoa HOM05D004769 ORTHO05D005605 5.2e-126 455.3 421 62.5
HPP92_017811 Vanilla planifolia HOM05D004769 ORTHO05D005605 4.4e-125 452.2 438 63.9
Ah.02g128700 Amaranthus hybridus HOM05D004769 ORTHO05D005605 9.8e-125 451.1 509 60.3
CSS0001926 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 2.2e-124 449.9 266 82.7
Os05g0178900 Oryza sativa ssp. japonica HOM05D004769 ORTHO05D005605 3.7e-124 449.1 441 66.7
CAN.G525.4 Capsicum annuum HOM05D004769 ORTHO05D005605 4.9e-124 448.7 434 68.9
Lj2C513G15 Lonicera japonica HOM05D004769 ORTHO05D005605 1.1e-123 447.6 421 58.2
Lalb_Chr04g0251441 Lupinus albus HOM05D004769 ORTHO05D005605 1.1e-123 447.6 432 70.1
ATR0083G043 Amborella trichopoda HOM05D004769 ORTHO05D005605 1.9e-123 446.8 428 67.3
HanXRQChr08g0218471 Helianthus annuus HOM05D004769 ORTHO05D005605 2.4e-123 446.4 424 70.8
MELO3C025080.2 Cucumis melo HOM05D004769 ORTHO05D005605 2.7e-122 443.0 498 60.6
Rhsim10G0183300 Rhododendron simsii HOM05D004769 ORTHO05D005605 3.5e-122 442.6 428 68.9
Nn1g02020 Nelumbo nucifera HOM05D004769 ORTHO05D005605 6.0e-122 441.8 431 71.9
CsaV3_5G020660 Cucumis sativus L. HOM05D004769 ORTHO05D005605 1.7e-121 440.3 449 65.9
SHI30114 Sapria himalayana HOM05D002544 ORTHO05D007856 1.1e-120 437.6 418 62.0
MSTRG.3686 Avicennia marina HOM05D004769 ORTHO05D005605 6.2e-119 431.8 447 66.2
AUR62032521 Chenopodium quinoa HOM05D004769 ORTHO05D005605 8.0e-119 431.4 414 57.2
vmacro20487 Vaccinium macrocarpon HOM05D004769 ORTHO05D005605 1.1e-118 431.0 235 86.8
Migut.H02243 Erythranthe guttata HOM05D004769 ORTHO05D005605 1.4e-118 430.6 431 67.7
Oeu032315.1 Olea europaea HOM05D004769 ORTHO05D005605 1.2e-117 427.6 500 57.8
BolC4t25993H Brassica oleracea HOM05D004769 ORTHO05D005605 1.5e-117 427.2 431 63.1
Zm00001eb377290 Zea mays HOM05D004769 ORTHO05D005605 1.5e-117 427.2 434 58.1
Thhalv10027788m.g Eutrema salsugineum HOM05D004769 ORTHO05D005605 2.0e-117 426.8 427 68.4
AL7G46000 Arabidopsis lyrata HOM05D004769 ORTHO05D005605 9.8e-117 424.5 429 66.2
C04p44180 Brassica napus HOM05D004769 ORTHO05D005605 2.9e-116 422.9 431 62.9
Carub.0007s3249 Capsella rubella HOM05D004769 ORTHO05D005605 2.9e-116 422.9 431 64.7
DCAR_028435 Daucus carota HOM05D004769 ORTHO05D005605 2.9e-116 422.9 265 79.6
Sp7g05100 Schrenkiella parvula HOM05D004769 ORTHO05D005605 2.9e-116 422.9 427 58.5
A04p10540 Brassica napus HOM05D004769 ORTHO05D005605 3.5e-114 416.0 434 64.7
Oeu029083.1 Olea europaea HOM05D004769 ORTHO05D005605 3.5e-114 416.0 505 57.0
BcaC02g09560 Brassica carinata HOM05D004769 ORTHO05D005605 1.2e-111 407.5 431 61.3
LjContig00141g0012428 Lotus japonicus HOM05D004769 ORTHO05D005605 1.1e-110 404.4 475 51.6
BraA04t16720Z Brassica rapa HOM05D004769 ORTHO05D005605 2.3e-110 403.3 431 66.1
MapolyY_B0025 Marchantia polymorpha HOM05D004769 ORTHO05D005605 5.2e-110 402.1 263 73.8
SGA_v2.0_scaffold45G17131 Striga asiatica HOM05D004769 ORTHO05D005605 1.2e-109 401.0 427 58.8
unitig_748.g7024 Utricularia gibba HOM05D004769 ORTHO05D005605 1.1e-107 394.4 241 78.8
Mapoly0017s0020 Marchantia polymorpha HOM05D004769 ORTHO05D005605 1.4e-107 394.0 271 72.3
SGA_v2.0_scaffold115G32089 Striga asiatica HOM05D004769 ORTHO05D005605 2.4e-107 393.3 430 61.6
Pp3c14_14980 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.3e-105 386.7 228 78.1
Pp3c14_14989 Physcomitrium patens HOM05D004769 ORTHO05D005605 2.3e-105 386.7 228 78.1
SMO351G0501 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 5.6e-104 382.1 229 78.2
Migut.K01113 Erythranthe guttata HOM05D004769 ORTHO05D005605 2.0e-101 373.6 228 77.2
Eucgr.J01630 Eucalyptus grandis HOM05D004769 ORTHO05D005605 3.4e-101 372.9 388 68.8
CBR_g22246 Chara braunii HOM05D004769 ORTHO05D005605 7.6e-101 371.7 231 76.6
CARHR215720 Cardamine hirsuta HOM05D004769 ORTHO05D005605 1.0e-97 361.3 382 64.1
PSO170G3102 Papaver somniferum HOM05D004769 ORTHO05D005605 1.7e-97 360.5 400 64.0
Dinv28230 Davidia involucrata HOM05D004769 ORTHO05D005605 3.9e-89 332.8 336 69.6
CDE02G3274 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 7.9e-82 308.5 155 88.4
Pp3c17_5870 Physcomitrium patens HOM05D004769 ORTHO05D005605 1.5e-80 304.3 209 71.8
Duzib211G0206 Durio zibethinus HOM05D004769 ORTHO05D005605 4.0e-78 296.2 331 67.4
Manes.02G080000 Manihot esculenta HOM05D004769 ORTHO05D005605 7.6e-77 292.0 318 73.9
Lalb_Chr10g0104091 Lupinus albus HOM05D004769 ORTHO05D005605 2.2e-76 290.4 149 86.6
Ciclev10015797m.g Citrus clementina HOM05D004769 ORTHO05D005605 3.8e-76 289.7 341 68.9
Nitab4.5_0005193g0040 Nicotiana tabacum HOM05D004769 ORTHO05D005605 8.7e-73 278.5 347 66.3
CDE02G0598 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 5.8e-69 265.8 137 85.4
Sed0026946 Sechium edule HOM05D004769 ORTHO05D005605 5.0e-68 262.7 347 60.5
Ciclev10018227m.g Citrus clementina HOM05D004769 ORTHO05D005605 8.7e-65 251.9 144 81.9
Cre03.g178300 Chlamydomonas reinhardtii HOM05D004769 ORTHO05D005605 4.8e-63 246.1 259 52.1
SEGI_40758 Sequoiadendron giganteum HOM05D004769 ORTHO05D005605 2.4e-62 243.8 156 76.3
Zm00001eb283000 Zea mays HOM05D004769 ORTHO05D005605 2.0e-61 240.7 325 60.0
CDE02G1258 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 6.5e-60 235.7 316 56.0
MCO07G113 Micromonas commoda HOM05D004769 ORTHO05D005605 6.5e-60 235.7 226 50.9
PRCOL_00000163 Prasinoderma coloniale HOM05D004769 ORTHO05D005605 3.2e-59 233.4 217 53.0
Lj1g0013060 Lotus japonicus HOM05D004769 ORTHO05D005605 5.5e-59 232.6 175 66.3
Oeu048972.1 Olea europaea HOM05D004769 ORTHO05D005605 1.6e-50 204.5 112 81.2
Lalb_Chr10g0104101 Lupinus albus HOM05D004769 ORTHO05D005605 5.1e-49 199.5 293 63.1
Sed0001997 Sechium edule HOM05D004769 ORTHO05D005605 1.5e-48 198.0 102 89.2
Psat2g044720 Pisum sativum HOM05D004769 ORTHO05D005605 2.0e-48 197.6 294 64.3
CSS0045560 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 8.2e-47 192.2 96 88.5
AT5G37370 Arabidopsis thaliana HOM05D004769 ORTHO05D005605 1.2e-45 188.3 298 56.4
SMO231G0026 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 1.7e-44 184.5 446 39.5
Gohir.A02G124601 Gossypium hirsutum HOM05D004769 ORTHO05D005605 6.5e-44 182.6 97 88.7
FAN07G1815 Fragaria x ananassa HOM05D004769 ORTHO05D005605 2.7e-42 177.2 247 66.8
Aa31LG9G17630 Aethionema arabicum HOM05D004769 ORTHO05D005605 4.7e-42 176.4 96 83.3
SMO231G0020 Selaginella moellendorffii HOM05D004769 ORTHO05D005605 2.3e-41 174.1 129 65.1
Zm00001eb361740 Zea mays HOM05D004769 ORTHO05D005605 9.7e-40 168.7 97 79.4
FAN05G2233 Fragaria x ananassa HOM05D004769 ORTHO05D005605 5.3e-38 162.9 252 64.7
Zm00001eb046660 Zea mays HOM05D004769 ORTHO05D005605 1.0e-36 158.7 83 85.5
Gohir.A11G193800 Gossypium hirsutum HOM05D004769 ORTHO05D005605 3.8e-36 156.8 86 86.0
Zm00001eb221230 Zea mays HOM05D004769 ORTHO05D005605 1.5e-35 154.8 82 84.1
HanXRQChr14g0429111 Helianthus annuus HOM05D004769 ORTHO05D005605 8.0e-34 149.1 80 88.8
HanXRQChr14g0429051 Helianthus annuus HOM05D004769 ORTHO05D005605 3.4e-32 143.7 80 86.2
MD01G1153700 Malus domestica HOM05D004769 ORTHO05D005605 9.8e-32 142.1 80 83.8
Actinidia28787 Actinidia chinensis HOM05D004769 ORTHO05D005605 3.8e-28 130.2 315 46.7
CSS0036345 Camellia sinensis var. sinensis HOM05D004769 ORTHO05D005605 4.7e-26 123.2 288 52.4
Gohir.A08G086562 Gossypium hirsutum HOM05D004769 ORTHO05D005605 1.0e-25 122.1 84 72.6
ATR0127G005 Amborella trichopoda HOM05D004769 ORTHO05D005605 8.8e-25 119.0 77 76.6
CDE02G3573 Ceratophyllum demersum HOM05D004769 ORTHO05D005605 1.1e-22 112.1 258 44.6
Lj2g0009880 Lotus japonicus HOM05D004769 ORTHO05D005605 1.3e-20 105.1 74 63.5
HanXRQChr08g0224021 Helianthus annuus HOM05D004769 ORTHO05D005605 1.7e-20 104.8 60 85.0
Lj1g0013083 Lotus japonicus HOM05D004769 ORTHO05D005605 3.3e-19 100.5 68 63.2
FAN23G0276 Fragaria x ananassa HOM05D004769 ORTHO05D005605 1.4e-14 85.1 119 52.1
SMO351G0097 Selaginella moellendorffii HOM05D007698 ORTHO05D009663 4.1e-14 83.6 61 60.7
AagrBONN_evm.TU.Sc2ySwM_344.2680 Anthoceros agrestis HOM05D004769 ORTHO05D005605 4.6e-13 80.1 247 46.2
Zm00001eb313200 Zea mays HOM05D004769 ORTHO05D005605 8.6e-12 75.9 43 81.4


User provided reference genes

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