Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G065600 Populus trichocarpa HOM05D001104 ORTHO05D006535 8.5e-37 156.4 73 100.0
Potri.011G083300 Populus trichocarpa HOM05D001104 ORTHO05D006535 8.0e-11 70.1 36 83.3
Sabra11G0066300 Salix brachista HOM05D001104 ORTHO05D006535 1.8e-10 68.9 36 80.6
Aqoxy4G00068 Aquilegia oxysepala HOM05D001104 ORTHO05D006535 6.8e-10 67.0 75 53.3
Haze_05624 Corylus avellana HOM05D001104 ORTHO05D006535 8.9e-10 66.6 36 77.8
Rhsim13G0115200 Rhododendron simsii HOM05D001104 ORTHO05D006535 8.9e-10 66.6 36 80.6
Duzib235G0771 Durio zibethinus HOM05D001104 ORTHO05D006535 1.5e-09 65.9 36 77.8
Thecc.06G148200 Theobroma cacao HOM05D001104 ORTHO05D006535 1.5e-09 65.9 36 77.8
CANSAT35G0592 Cannabis sativa HOM05D001104 ORTHO05D006535 2.6e-09 65.1 36 75.0
Prupe.4G083000 Prunus persica HOM05D001104 ORTHO05D006535 2.6e-09 65.1 36 77.8
COL.COLO4_26643 Corchorus olitorius HOM05D001104 ORTHO05D006535 3.4e-09 64.7 36 75.0
Ca_00531_v3 Cicer arietinum L. HOM05D001104 ORTHO05D006535 4.4e-09 64.3 36 72.2
Gohir.D10G043100 Gossypium hirsutum HOM05D001104 ORTHO05D006535 4.4e-09 64.3 36 72.2
Gorai.011G045700 Gossypium raimondii HOM05D001104 ORTHO05D006535 4.4e-09 64.3 36 72.2
Medtr2g019140 Medicago truncatula HOM05D001104 ORTHO05D006535 4.4e-09 64.3 36 72.2
Ciclev10016002m.g Citrus clementina HOM05D001104 ORTHO05D006535 5.8e-09 63.9 36 75.0
Gohir.A10G042200 Gossypium hirsutum HOM05D001104 ORTHO05D006535 5.8e-09 63.9 36 69.4
MD05G1281600 Malus domestica HOM05D001104 ORTHO05D006535 5.8e-09 63.9 36 72.2
Oeu030938.1 Olea europaea HOM05D001104 ORTHO05D006535 7.5e-09 63.5 36 75.0
PGR031G0308 Punica granatum HOM05D001104 ORTHO05D006535 7.5e-09 63.5 36 72.2
Actinidia33715 Actinidia chinensis HOM05D001104 ORTHO05D006535 9.8e-09 63.2 36 77.8
CSS0046912 Camellia sinensis var. sinensis HOM05D001104 ORTHO05D006535 9.8e-09 63.2 36 75.0
QL05p057213 Quercus lobata HOM05D001104 ORTHO05D006535 9.8e-09 63.2 36 75.0
Manes.17G072000 Manihot esculenta HOM05D001104 ORTHO05D006535 1.3e-08 62.8 36 72.2
GSVIVG01004589001 Vitis vinifera HOM05D001104 ORTHO05D006535 1.3e-08 62.8 36 72.2
GSVIVG01021522001 Vitis vinifera HOM05D001104 ORTHO05D006535 1.3e-08 62.8 36 72.2
CiPaw.10G090500 Carya illinoinensis HOM05D001104 ORTHO05D006535 1.7e-08 62.4 36 75.0
Lj6g0000691 Lotus japonicus HOM05D001104 ORTHO05D006535 1.7e-08 62.4 36 72.2
THA.LOC104812860 Tarenaya hassleriana HOM05D001104 ORTHO05D006535 1.7e-08 62.4 36 72.2
Atru.chr10.1174 Acer truncatum HOM05D001104 ORTHO05D006535 2.2e-08 62.0 36 69.4
Lalb_Chr18g0055331 Lupinus albus HOM05D001104 ORTHO05D006535 2.2e-08 62.0 36 69.4
TWI53G0561 Tripterygium wilfordii HOM05D001104 ORTHO05D006535 2.2e-08 62.0 36 69.4
TAR627G0692 Trochodendron aralioides HOM05D001104 ORTHO05D006535 2.2e-08 62.0 36 75.0
FvH4_3g05290 Fragaria vesca HOM05D001104 ORTHO05D006535 2.9e-08 61.6 36 69.4
FAN11G2893 Fragaria x ananassa HOM05D001104 ORTHO05D006535 2.9e-08 61.6 36 69.4
RcHm_v2.0_Chr5g0014431 Rosa chinensis HOM05D001104 ORTHO05D006535 2.9e-08 61.6 36 69.4
Eucgr.E02422 Eucalyptus grandis HOM05D001104 ORTHO05D006535 3.7e-08 61.2 36 66.7
Glyma.13G219400 Glycine max HOM05D001104 ORTHO05D006535 3.7e-08 61.2 36 69.4
Dinv32236 Davidia involucrata HOM05D001104 ORTHO05D006535 4.9e-08 60.8 36 72.2
FAN16G1841 Fragaria x ananassa HOM05D001104 ORTHO05D006535 4.9e-08 60.8 36 69.4
QL05p057244 Quercus lobata HOM05D001104 ORTHO05D006535 4.9e-08 60.8 32 81.2
arahy.Tifrunner.gnm1.ann1.VE11WY Arachis hypogaea HOM05D001104 ORTHO05D006535 6.4e-08 60.5 36 66.7
FAN25G1463 Fragaria x ananassa HOM05D001104 ORTHO05D006535 6.4e-08 60.5 36 66.7
Glyma.15G092800 Glycine max HOM05D001104 ORTHO05D006535 8.3e-08 60.1 36 69.4
MBI02_g46874_MAGBIO Magnolia biondii HOM05D001104 ORTHO05D006535 8.3e-08 60.1 36 69.4
BcaC09g51528 Brassica carinata HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
BcaNung00010 Brassica carinata HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
A01p10280 Brassica napus HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
C01p12230 Brassica napus HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
BolC1t01199H Brassica oleracea HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
BraA01t00975Z Brassica rapa HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 72.2
Psat1g191040 Pisum sativum HOM05D001104 ORTHO05D006535 1.1e-07 59.7 36 69.4
CAN.G1145.1 Capsicum annuum HOM05D001104 ORTHO05D006535 1.4e-07 59.3 36 69.4
Cpa.g.sc17.5 Carica papaya HOM05D001104 ORTHO05D006535 1.4e-07 59.3 36 66.7
Migut.M00896 Erythranthe guttata HOM05D001104 ORTHO05D006535 1.4e-07 59.3 36 69.4
Solyc08g048550.3 Solanum lycopersicum HOM05D001104 ORTHO05D006535 1.4e-07 59.3 36 69.4
Sopen08g010960 Solanum pennellii HOM05D001104 ORTHO05D006535 1.4e-07 59.3 36 69.4
Lj2A320T43 Lonicera japonica HOM05D001104 ORTHO05D006535 1.9e-07 58.9 36 66.7
Peaxi162Scf00317g00115 Petunia axillaris HOM05D001104 ORTHO05D006535 1.9e-07 58.9 36 69.4
PGSC0003DMG400029873 Solanum tuberosum HOM05D001104 ORTHO05D006535 1.9e-07 58.9 36 66.7
AL7G36010 Arabidopsis lyrata HOM05D001104 ORTHO05D006535 2.4e-07 58.5 36 69.4
CARHR225140 Cardamine hirsuta HOM05D001104 ORTHO05D006535 2.4e-07 58.5 36 69.4
Thhalv10025708m.g Eutrema salsugineum HOM05D001104 ORTHO05D006535 2.4e-07 58.5 36 69.4
FAN21G1335 Fragaria x ananassa HOM05D001104 ORTHO05D006535 2.4e-07 58.5 36 66.7
Aa31LG6G1070 Aethionema arabicum HOM05D001104 ORTHO05D006535 3.2e-07 58.2 36 63.9
Nn4g26599 Nelumbo nucifera HOM05D001104 ORTHO05D006535 3.2e-07 58.2 36 69.4
Nitab4.5_0000833g0070 Nicotiana tabacum HOM05D001104 ORTHO05D006535 3.2e-07 58.2 36 66.7
HPP92_015669 Vanilla planifolia HOM05D001104 ORTHO05D006535 3.2e-07 58.2 35 68.6
DCAR_003899 Daucus carota HOM05D001104 ORTHO05D006535 4.1e-07 57.8 36 72.2
unitig_748.g7673 Utricularia gibba HOM05D001104 ORTHO05D006535 4.1e-07 57.8 36 66.7
vmacro03335 Vaccinium macrocarpon HOM05D001104 ORTHO05D006535 4.1e-07 57.8 36 69.4
MELO3C002750.2 Cucumis melo HOM05D001104 ORTHO05D006535 5.4e-07 57.4 36 61.1
CsaV3_1G004620 Cucumis sativus L. HOM05D001104 ORTHO05D006535 5.4e-07 57.4 36 61.1
Sp7g15700 Schrenkiella parvula HOM05D001104 ORTHO05D006535 7.0e-07 57.0 36 66.7
AT4G18370 Arabidopsis thaliana HOM05D001104 ORTHO05D006535 9.2e-07 56.6 36 66.7
TPR.G26235 Trifolium pratense HOM05D001104 ORTHO05D006535 9.2e-07 56.6 36 66.7
VMungo0540G2226 Vigna mungo HOM05D001104 ORTHO05D006535 9.2e-07 56.6 36 63.9
Cc11_g03520 Coffea canephora HOM05D001104 ORTHO05D006535 1.2e-06 56.2 36 66.7
ECA236G1178 Erigeron canadensis HOM05D001104 ORTHO05D006535 1.2e-06 56.2 36 61.1
Nitab4.5_0009022g0010 Nicotiana tabacum HOM05D001104 ORTHO05D006535 1.2e-06 56.2 36 63.9
Hund17819 Selenicereus undatus HOM05D001104 ORTHO05D006535 1.2e-06 56.2 36 63.9
Sc24g0001720 Simmondsia chinensis HOM05D001104 ORTHO05D006535 1.2e-06 56.2 36 66.7
Lsat_1_v5_gn_7_27640 Lactuca sativa HOM05D001104 ORTHO05D006535 1.6e-06 55.8 36 58.3
Sed0007195 Sechium edule HOM05D001104 ORTHO05D006535 1.6e-06 55.8 36 61.1
HanXRQChr04g0115731 Helianthus annuus HOM05D001104 ORTHO05D006535 2.0e-06 55.5 36 58.3
SalBow8G4304 Salvia bowleyana HOM05D001104 ORTHO05D006535 2.0e-06 55.5 36 66.7
Carub.0007s2292 Capsella rubella HOM05D001104 ORTHO05D006535 4.6e-06 54.3 36 63.9
AUR62030175 Chenopodium quinoa HOM05D001104 ORTHO05D006535 4.6e-06 54.3 36 63.9
SGA_v2.0_scaffold1G00192 Striga asiatica HOM05D001104 ORTHO05D006535 4.6e-06 54.3 36 63.9
AUR62002715 Chenopodium quinoa HOM05D001104 ORTHO05D006535 7.8e-06 53.5 36 61.1


User provided reference genes

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