Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G019100 Populus trichocarpa HOM05D005787 ORTHO05D007011 3.3e-283 977.6 471 100.0
Sabra04G0010700 Salix brachista HOM05D005787 ORTHO05D007011 7.0e-257 890.2 575 77.7
Manes.16G010400 Manihot esculenta HOM05D005787 ORTHO05D007011 1.5e-227 792.7 472 80.3
Prupe.4G024200 Prunus persica HOM05D005787 ORTHO05D007011 9.5e-222 773.5 477 77.8
Thecc.06G217000 Theobroma cacao HOM05D005787 ORTHO05D007011 1.1e-220 770.0 480 76.7
Cpa.g.sc198.22 Carica papaya HOM05D005787 ORTHO05D007011 1.1e-217 760.0 484 75.2
QL05p074231 Quercus lobata HOM05D005787 ORTHO05D007011 8.6e-215 750.4 477 75.7
Gohir.D05G171800 Gossypium hirsutum HOM05D005787 ORTHO05D007011 1.9e-214 749.2 475 76.2
Gorai.009G176900 Gossypium raimondii HOM05D005787 ORTHO05D007011 4.3e-214 748.0 475 76.0
Dinv20032 Davidia involucrata HOM05D005787 ORTHO05D007011 9.5e-214 746.9 463 75.6
Haze_06771 Corylus avellana HOM05D005787 ORTHO05D007011 1.4e-212 743.0 475 76.4
Atru.chr10.2171 Acer truncatum HOM05D005787 ORTHO05D007011 1.8e-212 742.7 484 73.1
GSVIVG01012651001 Vitis vinifera HOM05D005787 ORTHO05D007011 3.4e-211 738.4 460 75.4
Gohir.A05G168600 Gossypium hirsutum HOM05D005787 ORTHO05D007011 6.4e-210 734.2 486 73.7
CANSAT56G2549 Cannabis sativa HOM05D005787 ORTHO05D007011 1.1e-209 733.4 477 71.9
TAR624G0905 Trochodendron aralioides HOM05D005787 ORTHO05D007011 9.2e-209 730.3 463 73.2
FvH4_3g02480 Fragaria vesca HOM05D005787 ORTHO05D007011 2.3e-207 725.7 476 73.7
RcHm_v2.0_Chr5g0003731 Rosa chinensis HOM05D005787 ORTHO05D007011 2.3e-207 725.7 473 73.8
Rhsim02G0110900 Rhododendron simsii HOM05D005787 ORTHO05D007011 3.0e-207 725.3 449 75.7
FAN25G2524 Fragaria x ananassa HOM05D005787 ORTHO05D007011 5.1e-207 724.5 476 73.7
Oeu015733.1 Olea europaea HOM05D005787 ORTHO05D007011 5.1e-207 724.5 468 73.5
Ciclev10015055m.g Citrus clementina HOM05D005787 ORTHO05D007011 8.6e-207 723.8 480 72.1
Nn1g07089 Nelumbo nucifera HOM05D005787 ORTHO05D007011 5.6e-206 721.1 463 72.1
Eucgr.E04102 Eucalyptus grandis HOM05D005787 ORTHO05D007011 4.0e-204 714.9 473 74.2
PGR042G0837 Punica granatum HOM05D005787 ORTHO05D007011 1.2e-203 713.4 475 71.2
Actinidia11846 Actinidia chinensis HOM05D005787 ORTHO05D007011 2.0e-203 712.6 449 73.1
vmacro15819 Vaccinium macrocarpon HOM05D005787 ORTHO05D007011 7.6e-203 710.7 453 73.3
Lj6g0006260 Lotus japonicus HOM05D005787 ORTHO05D007011 1.3e-202 709.9 476 71.0
MD10G1317600 Malus domestica HOM05D005787 ORTHO05D007011 1.7e-202 709.5 398 82.2
Lj1C1227T21 Lonicera japonica HOM05D005787 ORTHO05D007011 8.4e-202 707.2 452 74.6
Ca_00626_v3 Cicer arietinum L. HOM05D005787 ORTHO05D007011 1.1e-201 706.8 474 71.5
Glyma.13G206600 Glycine max HOM05D005787 ORTHO05D007011 2.7e-200 702.2 410 77.3
Glyma.15G106100 Glycine max HOM05D005787 ORTHO05D007011 6.0e-200 701.0 468 70.9
Phvul.006G151200 Phaseolus vulgaris HOM05D005787 ORTHO05D007011 6.6e-199 697.6 468 70.9
Medtr2g022770 Medicago truncatula HOM05D005787 ORTHO05D007011 1.9e-198 696.0 473 70.2
THA.LOC104812988 Tarenaya hassleriana HOM05D005787 ORTHO05D007011 1.9e-198 696.0 463 71.7
TPR.G7642 Trifolium pratense HOM05D005787 ORTHO05D007011 5.6e-198 694.5 415 76.6
Psat1g182520 Pisum sativum HOM05D005787 ORTHO05D007011 7.3e-198 694.1 473 70.2
Aa31LG6G3750 Aethionema arabicum HOM05D005787 ORTHO05D007011 1.4e-196 689.9 466 70.6
Cc09_g01960 Coffea canephora HOM05D005787 ORTHO05D007011 1.4e-196 689.9 467 69.8
PGSC0003DMG400002087 Solanum tuberosum HOM05D005787 ORTHO05D007011 1.4e-196 689.9 472 69.7
VMungo0540G0861 Vigna mungo HOM05D005787 ORTHO05D007011 3.1e-196 688.7 475 69.7
Lalb_Chr18g0056211 Lupinus albus HOM05D005787 ORTHO05D007011 4.0e-196 688.3 408 77.2
ClCG03G004890 Citrullus lanatus HOM05D005787 ORTHO05D007011 6.9e-196 687.6 491 68.8
Lj6g0025395 Lotus japonicus HOM05D005787 ORTHO05D007011 3.4e-195 685.3 476 69.5
Solyc02g080320.4 Solanum lycopersicum HOM05D005787 ORTHO05D007011 7.6e-195 684.1 472 69.1
CsaV3_1G010950 Cucumis sativus L. HOM05D005787 ORTHO05D007011 1.3e-194 683.3 477 69.6
CSS0006555 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 1.7e-194 682.9 489 66.9
Sopen02g025020 Solanum pennellii HOM05D005787 ORTHO05D007011 2.2e-194 682.6 472 69.3
PSO541G2671 Papaver somniferum HOM05D005787 ORTHO05D007011 2.4e-193 679.1 464 69.2
Aqoxy1G03304 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 4.2e-193 678.3 462 69.5
Peaxi162Scf00262g00038 Petunia axillaris HOM05D005787 ORTHO05D007011 4.2e-193 678.3 449 71.5
CAN.G569.24 Capsicum annuum HOM05D005787 ORTHO05D007011 9.3e-193 677.2 451 71.2
Sed0015393 Sechium edule HOM05D005787 ORTHO05D007011 2.7e-192 675.6 469 70.4
Sp7g19940 Schrenkiella parvula HOM05D005787 ORTHO05D007011 1.0e-191 673.7 461 70.5
Migut.H01558 Erythranthe guttata HOM05D005787 ORTHO05D007011 6.6e-191 671.0 457 69.8
Lalb_Chr18g0056221 Lupinus albus HOM05D005787 ORTHO05D007011 2.5e-190 669.1 409 75.6
Psat0s341g0040 Pisum sativum HOM05D005787 ORTHO05D007011 9.6e-190 667.2 448 69.6
arahy.Tifrunner.gnm1.ann1.J4BAYR Arachis hypogaea HOM05D005787 ORTHO05D007011 2.1e-189 666.0 490 66.5
SalBow1G7047 Salvia bowleyana HOM05D005787 ORTHO05D007011 2.1e-189 666.0 467 69.0
AL7G32160 Arabidopsis lyrata HOM05D005787 ORTHO05D007011 4.8e-189 664.8 467 69.4
BcaNung02245 Brassica carinata HOM05D005787 ORTHO05D007011 4.8e-189 664.8 459 69.3
BcaC09g51204 Brassica carinata HOM05D005787 ORTHO05D007011 8.1e-189 664.1 458 69.9
A01p13100 Brassica napus HOM05D005787 ORTHO05D007011 1.4e-188 663.3 460 69.6
arahy.Tifrunner.gnm1.ann1.N0U7LY Arachis hypogaea HOM05D005787 ORTHO05D007011 1.8e-188 662.9 491 66.4
C01p15790 Brassica napus HOM05D005787 ORTHO05D007011 2.4e-188 662.5 460 69.8
BolC1t01532H Brassica oleracea HOM05D005787 ORTHO05D007011 2.4e-188 662.5 460 69.8
AT4G21770 Arabidopsis thaliana HOM05D005787 ORTHO05D007011 4.0e-188 661.8 464 69.8
EL10Ac8g20016 Beta vulgaris HOM05D005787 ORTHO05D007011 9.0e-188 660.6 461 67.7
Nitab4.5_0003893g0010 Nicotiana tabacum HOM05D005787 ORTHO05D007011 1.2e-187 660.2 454 70.3
TPR.G33224 Trifolium pratense HOM05D005787 ORTHO05D007011 1.2e-187 660.2 440 70.0
BraA01t01253Z Brassica rapa HOM05D005787 ORTHO05D007011 2.0e-187 659.4 460 69.1
CsaV3_1G010930 Cucumis sativus L. HOM05D005787 ORTHO05D007011 3.4e-187 658.7 471 67.7
CARHR228510 Cardamine hirsuta HOM05D005787 ORTHO05D007011 5.8e-187 657.9 471 68.6
Thhalv10025093m.g Eutrema salsugineum HOM05D005787 ORTHO05D007011 2.2e-186 656.0 466 68.2
AUR62021985 Chenopodium quinoa HOM05D005787 ORTHO05D007011 9.3e-185 650.6 453 66.9
SGA_v2.0_scaffold89G27454 Striga asiatica HOM05D005787 ORTHO05D007011 2.1e-184 649.4 471 68.6
Medtr7g113450 Medicago truncatula HOM05D005787 ORTHO05D007011 2.7e-184 649.0 431 70.5
AUR62012669 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.0e-184 647.9 453 66.2
Hund21387 Selenicereus undatus HOM05D005787 ORTHO05D007011 1.8e-183 646.4 472 65.5
MD10G1317000 Malus domestica HOM05D005787 ORTHO05D007011 4.3e-182 641.7 423 74.5
HanXRQChr01g0003621 Helianthus annuus HOM05D005787 ORTHO05D007011 2.1e-181 639.4 450 67.1
ATR0752G095 Amborella trichopoda HOM05D005787 ORTHO05D007011 4.0e-180 635.2 463 65.0
Carub.0007s1963 Capsella rubella HOM05D005787 ORTHO05D007011 6.9e-180 634.4 393 74.8
ECA248G2950 Erigeron canadensis HOM05D005787 ORTHO05D007011 7.6e-179 630.9 477 63.7
HanXRQChr05g0138101 Helianthus annuus HOM05D005787 ORTHO05D007011 1.3e-178 630.2 396 73.2
Lsat_1_v5_gn_1_122000 Lactuca sativa HOM05D005787 ORTHO05D007011 6.4e-178 627.9 474 65.8
AUR62012670 Chenopodium quinoa HOM05D005787 ORTHO05D007011 2.7e-176 622.5 399 69.9
MELO3C002471.2 Cucumis melo HOM05D005787 ORTHO05D007011 1.3e-173 613.6 409 71.6
Hund21388 Selenicereus undatus HOM05D005787 ORTHO05D007011 4.8e-173 611.7 388 69.8
AUR62021984 Chenopodium quinoa HOM05D005787 ORTHO05D007011 6.9e-172 607.8 418 66.5
Ah.09g235150 Amaranthus hybridus HOM05D005787 ORTHO05D007011 2.6e-171 605.9 456 63.4
MELO3C002473.2 Cucumis melo HOM05D005787 ORTHO05D007011 4.2e-169 598.6 355 78.9
Ah.09g235140 Amaranthus hybridus HOM05D005787 ORTHO05D007011 5.5e-169 598.2 413 65.6
DCAR_024937 Daucus carota HOM05D005787 ORTHO05D007011 2.1e-168 596.3 357 76.2
Lsat_1_v5_gn_1_128660 Lactuca sativa HOM05D005787 ORTHO05D007011 3.0e-167 592.4 468 63.7
EL10Ac8g20017 Beta vulgaris HOM05D005787 ORTHO05D007011 3.9e-167 592.0 408 66.4
MBI02_g15259_MAGBIO Magnolia biondii HOM05D005787 ORTHO05D007011 3.3e-166 589.0 454 64.5
Zm00001eb110780 Zea mays HOM05D005787 ORTHO05D007011 2.0e-163 579.7 408 65.9
CiPaw.10G069200 Carya illinoinensis HOM05D005787 ORTHO05D007011 5.0e-162 575.1 387 70.5
CiPaw.09G089100 Carya illinoinensis HOM05D005787 ORTHO05D007011 7.2e-161 571.2 367 75.2
unitig_0.g957 Utricularia gibba HOM05D005787 ORTHO05D007011 3.0e-159 565.8 356 72.2
HPP92_013307 Vanilla planifolia HOM05D005787 ORTHO05D007011 1.7e-157 560.1 353 69.4
ECA248G3226 Erigeron canadensis HOM05D005787 ORTHO05D007011 9.4e-153 544.3 394 65.2
Sc05g0009040 Simmondsia chinensis HOM05D005787 ORTHO05D007011 7.0e-148 528.1 379 67.8
Aqoxy92s001 Aquilegia oxysepala HOM05D005787 ORTHO05D007011 5.3e-132 475.3 427 57.4
Mapoly0146s0040 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.0e-128 461.5 413 54.0
Pp3c5_11180 Physcomitrium patens HOM05D005787 ORTHO05D007011 2.4e-124 449.9 395 53.7
Mapoly0067s0098 Marchantia polymorpha HOM05D005787 ORTHO05D007011 8.6e-122 441.4 406 53.0
CSS0044707 Camellia sinensis var. sinensis HOM05D005787 ORTHO05D007011 2.5e-121 439.9 312 68.6
CANSAT64G1034 Cannabis sativa HOM05D005787 ORTHO05D007011 5.5e-121 438.7 259 79.5
SMO200G0166 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 6.1e-120 435.3 404 50.5
SMO200G0270 Selaginella moellendorffii HOM05D005787 ORTHO05D007011 1.0e-111 407.9 435 46.7
DCAR_029795 Daucus carota HOM05D005787 ORTHO05D007011 9.2e-100 368.2 278 66.2
SEGI_04414 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.3e-90 337.8 243 62.1
RcHm_v2.0_Chr5g0003761 Rosa chinensis HOM05D005787 ORTHO05D007011 5.6e-81 305.8 235 68.5
CDE11G0446 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 7.6e-78 295.4 185 65.9
CDE11G0095 Ceratophyllum demersum HOM05D005787 ORTHO05D007011 1.5e-73 281.2 180 73.3
MSTRG.13153 Avicennia marina HOM05D005787 ORTHO05D007011 5.6e-73 279.3 160 76.9
AagrBONN_evm.TU.Sc2ySwM_228.3336 Anthoceros agrestis HOM05D005787 ORTHO05D007011 8.7e-66 255.4 206 57.8
SEGI_19902 Sequoiadendron giganteum HOM05D005787 ORTHO05D007011 1.1e-63 248.4 157 72.0
DCAR_029794 Daucus carota HOM05D005787 ORTHO05D007011 1.8e-55 221.1 129 71.3
Hma1.2p1_3055F.1_g332150 Hydrangea macrophylla HOM05D005787 ORTHO05D007011 2.9e-45 187.2 118 69.5
Cre11.g474850 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 2.2e-29 134.4 377 29.4
MCO11G946 Micromonas commoda HOM05D005787 ORTHO05D007011 5.0e-29 133.3 461 27.3
BcaC05g26802 Brassica carinata HOM05D005787 ORTHO05D007011 1.8e-26 124.8 86 68.6
MCO10G204 Micromonas commoda HOM05D005787 ORTHO05D007011 3.1e-23 114.0 475 24.8
PRCOL_00006623 Prasinoderma coloniale HOM05D005787 ORTHO05D007011 1.0e-18 99.0 367 29.2
A09p39340 Brassica napus HOM05D005787 ORTHO05D007011 2.9e-13 80.9 55 72.7
A01p18320 Brassica napus HOM05D005787 ORTHO05D007011 2.1e-11 74.7 56 69.6
Cre10.g462500 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 3.6e-11 73.9 166 33.7
Cre10.g462600 Chlamydomonas reinhardtii HOM05D005787 ORTHO05D007011 6.1e-11 73.2 89 40.4
QL05p074297 Quercus lobata HOM05D000001 ORTHO05D007011 3.0e-10 70.9 55 58.2
C01p29500 Brassica napus HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 52.5
BolC1t02892H Brassica oleracea HOM05D005787 ORTHO05D042539 1.3e-08 65.5 61 52.5
Os07g0660400 Oryza sativa ssp. japonica HOM05D005787 ORTHO05D007011 4.1e-07 60.5 54 50.0
Cfa023901 Carpinus fangiana HOM05D005705 ORTHO05D007152 5.9e-06 56.6 195 24.6
Cc08_g11650 Coffea canephora HOM05D005705 ORTHO05D007152 7.7e-06 56.2 208 23.1


User provided reference genes

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