Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G009600 Populus trichocarpa HOM05D004784 ORTHO05D005762 1.5e-239 832.4 409 100.0
Potri.011G006800 Populus trichocarpa HOM05D004784 ORTHO05D005762 2.2e-230 802.0 409 95.4
Sabra11G0005900 Salix brachista HOM05D004784 ORTHO05D005762 2.0e-228 795.4 409 94.6
Thecc.06G223500 Theobroma cacao HOM05D004784 ORTHO05D005762 7.0e-221 770.4 406 91.6
Manes.17G025900 Manihot esculenta HOM05D004784 ORTHO05D005762 1.2e-220 769.6 406 91.6
Sabra04G0005000 Salix brachista HOM05D004784 ORTHO05D005762 3.5e-220 768.1 385 97.4
Duzib192G0808 Durio zibethinus HOM05D004784 ORTHO05D005762 1.7e-219 765.8 406 91.1
CiPaw.09G093700 Carya illinoinensis HOM05D004784 ORTHO05D005762 5.0e-219 764.2 409 89.0
COL.COLO4_31797 Corchorus olitorius HOM05D004784 ORTHO05D005762 5.0e-219 764.2 406 90.6
Gohir.A05G171500 Gossypium hirsutum HOM05D004784 ORTHO05D005762 8.5e-219 763.5 406 90.6
Gohir.D05G174600 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.1e-218 763.1 406 90.9
Prupe.4G018500 Prunus persica HOM05D004784 ORTHO05D005762 1.1e-218 763.1 409 90.0
FAN25G0478 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.9e-218 762.3 409 89.7
Gorai.010G181500 Gossypium raimondii HOM05D004784 ORTHO05D005762 1.9e-218 762.3 406 90.9
Gohir.A06G149200 Gossypium hirsutum HOM05D004784 ORTHO05D005762 2.5e-218 761.9 406 90.6
Hma1.2p1_0091F.1_g046500 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 2.5e-218 761.9 409 89.0
QL05p072692 Quercus lobata HOM05D004784 ORTHO05D005762 2.5e-218 761.9 405 89.4
TWI38G1114 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 4.2e-218 761.1 409 89.7
QL02p099920 Quercus lobata HOM05D004784 ORTHO05D005762 5.5e-218 760.8 408 88.7
FvH4_3g01820 Fragaria vesca HOM05D004784 ORTHO05D005762 1.6e-217 759.2 409 89.2
Gohir.D06G155300 Gossypium hirsutum HOM05D004784 ORTHO05D005762 1.6e-217 759.2 406 90.4
Sed0013135 Sechium edule HOM05D004784 ORTHO05D005762 2.7e-217 758.4 406 89.7
CiPaw.10G073000 Carya illinoinensis HOM05D004784 ORTHO05D005762 4.7e-217 757.7 409 88.0
RcHm_v2.0_Chr5g0002651 Rosa chinensis HOM05D004784 ORTHO05D005762 6.1e-217 757.3 409 89.0
Hma1.2p1_0298F.1_g117720 Hydrangea macrophylla HOM05D004784 ORTHO05D005762 1.0e-216 756.5 408 88.7
FAN21G1227 Fragaria x ananassa HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 89.0
MD10G1323700 Malus domestica HOM05D004784 ORTHO05D005762 1.4e-216 756.1 409 89.2
Nitab4.5_0002695g0040 Nicotiana tabacum HOM05D004784 ORTHO05D005762 1.8e-216 755.7 404 88.9
TWI63G0560 Tripterygium wilfordii HOM05D004784 ORTHO05D005762 2.3e-216 755.4 409 88.5
Nitab4.5_0007963g0010 Nicotiana tabacum HOM05D004784 ORTHO05D005762 3.0e-216 755.0 404 88.6
Eucgr.L02773 Eucalyptus grandis HOM05D004784 ORTHO05D005762 5.2e-216 754.2 409 88.8
MELO3C002444.2 Cucumis melo HOM05D004784 ORTHO05D005762 6.8e-216 753.8 406 89.4
Rhsim13G0152700 Rhododendron simsii HOM05D004784 ORTHO05D005762 8.8e-216 753.4 409 88.5
Sed0006727 Sechium edule HOM05D004784 ORTHO05D005762 8.8e-216 753.4 406 88.9
Dinv20065 Davidia involucrata HOM05D004784 ORTHO05D005762 1.5e-215 752.7 409 88.3
Haze_06821 Corylus avellana HOM05D004784 ORTHO05D005762 2.6e-215 751.9 409 87.3
Dinv13913 Davidia involucrata HOM05D004784 ORTHO05D005762 2.6e-215 751.9 409 88.0
arahy.Tifrunner.gnm1.ann1.EH8QHL Arachis hypogaea HOM05D004784 ORTHO05D005762 3.4e-215 751.5 406 88.9
ClCG03G004610 Citrullus lanatus HOM05D004784 ORTHO05D005762 5.7e-215 750.7 406 88.9
Atru.chr10.2254 Acer truncatum HOM05D004784 ORTHO05D005762 7.5e-215 750.4 409 87.8
Cfa000202 Carpinus fangiana HOM05D004784 ORTHO05D005762 9.8e-215 750.0 409 87.0
Peaxi162Scf00131g01117 Petunia axillaris HOM05D004784 ORTHO05D005762 1.3e-214 749.6 405 87.4
CsaV3_1G010620 Cucumis sativus L. HOM05D004784 ORTHO05D005762 1.7e-214 749.2 406 88.9
TAR629G2745 Trochodendron aralioides HOM05D004784 ORTHO05D005762 2.2e-214 748.8 409 87.8
SalBow8G0639 Salvia bowleyana HOM05D004784 ORTHO05D005762 2.8e-214 748.4 409 87.8
PGSC0003DMG400016444 Solanum tuberosum HOM05D004784 ORTHO05D005762 4.8e-214 747.7 404 87.9
Lj6g0010262 Lotus japonicus HOM05D004784 ORTHO05D005762 8.3e-214 746.9 406 88.2
Sopen02g025500 Solanum pennellii HOM05D004784 ORTHO05D005762 1.4e-213 746.1 404 87.6
MSTRG.7197 Avicennia marina HOM05D004784 ORTHO05D005762 1.8e-213 745.7 409 86.8
Lalb_Chr18g0056491 Lupinus albus HOM05D004784 ORTHO05D005762 1.8e-213 745.7 404 88.1
CAN.G1014.12 Capsicum annuum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 404 87.9
Oeu013835.1 Olea europaea HOM05D004784 ORTHO05D005762 2.4e-213 745.3 409 85.8
Solyc02g080810.3 Solanum lycopersicum HOM05D004784 ORTHO05D005762 2.4e-213 745.3 404 87.4
Oeu002744.1 Olea europaea HOM05D004784 ORTHO05D005762 3.1e-213 745.0 409 86.6
Ca_21072_v3 Cicer arietinum L. HOM05D004784 ORTHO05D005762 4.1e-213 744.6 406 87.9
Glyma.09G004700 Glycine max HOM05D004784 ORTHO05D005762 7.0e-213 743.8 406 87.4
Cc09_g01490 Coffea canephora HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 87.7
TPR.G37066 Trifolium pratense HOM05D004784 ORTHO05D005762 1.6e-212 742.7 406 87.4
vmacro03682 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 2.0e-212 742.3 425 85.9
Lj1A1232G87 Lonicera japonica HOM05D004784 ORTHO05D005762 2.7e-212 741.9 407 86.7
Phvul.003G080400 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 5.9e-212 740.7 406 87.9
VMungo1215G1817 Vigna mungo HOM05D004784 ORTHO05D005762 7.7e-212 740.3 406 88.2
Glyma.17G012000 Glycine max HOM05D004784 ORTHO05D005762 1.7e-211 739.2 406 87.7
PGR142G1596 Punica granatum HOM05D004784 ORTHO05D005762 2.3e-211 738.8 411 87.1
Glyma.07G262100 Glycine max HOM05D004784 ORTHO05D005762 2.9e-211 738.4 406 87.2
Aqoxy1G03119 Aquilegia oxysepala HOM05D004784 ORTHO05D005762 3.8e-211 738.0 409 85.6
Medtr4g132360 Medicago truncatula HOM05D004784 ORTHO05D005762 3.8e-211 738.0 406 87.2
Hund23455 Selenicereus undatus HOM05D004784 ORTHO05D005762 6.6e-211 737.3 409 85.8
Lalb_Chr15g0087671 Lupinus albus HOM05D004784 ORTHO05D005762 8.6e-211 736.9 404 87.1
THA.LOC104809494 Tarenaya hassleriana HOM05D004784 ORTHO05D005762 8.6e-211 736.9 409 86.6
Ciclev10015433m.g Citrus clementina HOM05D004784 ORTHO05D005762 1.5e-210 736.1 410 86.8
Glyma.15G109300 Glycine max HOM05D004784 ORTHO05D005762 5.5e-210 734.2 405 86.4
RhsimUnG0232700 Rhododendron simsii HOM05D004784 ORTHO05D005762 1.6e-209 732.6 452 80.1
Hund21422 Selenicereus undatus HOM05D004784 ORTHO05D005762 1.6e-209 732.6 409 85.1
CANSAT56G2555 Cannabis sativa HOM05D004784 ORTHO05D005762 2.1e-209 732.3 406 86.2
Migut.M01336 Erythranthe guttata HOM05D004784 ORTHO05D005762 6.1e-209 730.7 407 85.3
CARHR012170 Cardamine hirsuta HOM05D004784 ORTHO05D005762 8.0e-209 730.3 409 85.8
Psat4g005920 Pisum sativum HOM05D004784 ORTHO05D005762 8.0e-209 730.3 407 86.7
Sp1g10470 Schrenkiella parvula HOM05D004784 ORTHO05D005762 1.8e-208 729.2 409 85.6
Aa31LG1G2870 Aethionema arabicum HOM05D004784 ORTHO05D005762 2.3e-208 728.8 409 85.8
AL1G23030 Arabidopsis lyrata HOM05D004784 ORTHO05D005762 3.0e-208 728.4 409 85.3
Nn1g03473 Nelumbo nucifera HOM05D004784 ORTHO05D005762 3.0e-208 728.4 448 79.9
Phvul.006G148700 Phaseolus vulgaris HOM05D004784 ORTHO05D005762 3.0e-208 728.4 406 85.7
Ah.09g234740 Amaranthus hybridus HOM05D004784 ORTHO05D005762 4.0e-208 728.0 409 84.8
AT1G11860 Arabidopsis thaliana HOM05D004784 ORTHO05D005762 4.0e-208 728.0 409 85.1
arahy.Tifrunner.gnm1.ann1.PLZ2LX Arachis hypogaea HOM05D004784 ORTHO05D005762 5.2e-208 727.6 396 88.4
Thhalv10007781m.g Eutrema salsugineum HOM05D004784 ORTHO05D005762 5.2e-208 727.6 409 85.3
Carub.0001s1151 Capsella rubella HOM05D004784 ORTHO05D005762 8.9e-208 726.9 409 85.3
DCAR_008168 Daucus carota HOM05D004784 ORTHO05D005762 2.6e-207 725.3 421 84.1
Ah.14g087950 Amaranthus hybridus HOM05D004784 ORTHO05D005762 3.4e-207 724.9 409 83.9
MBI02_g15378_MAGBIO Magnolia biondii HOM05D004784 ORTHO05D005762 3.4e-207 724.9 410 84.6
PSO541G3045 Papaver somniferum HOM05D004784 ORTHO05D005762 3.4e-207 724.9 410 83.9
unitig_92.g28113 Utricularia gibba HOM05D004784 ORTHO05D005762 3.4e-207 724.9 406 86.0
PSO675G1799 Papaver somniferum HOM05D004784 ORTHO05D005762 4.4e-207 724.5 410 83.9
MSTRG.14637 Avicennia marina HOM05D004784 ORTHO05D005762 9.8e-207 723.4 409 83.9
CDE05G1701 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 9.8e-207 723.4 406 85.2
vmacro22539 Vaccinium macrocarpon HOM05D004784 ORTHO05D005762 1.3e-206 723.0 476 76.9
C08p47920 Brassica napus HOM05D004784 ORTHO05D005762 2.8e-206 721.8 409 84.8
BolC8t52329H Brassica oleracea HOM05D004784 ORTHO05D005762 3.7e-206 721.5 409 84.6
CDE02G4424 Ceratophyllum demersum HOM05D004784 ORTHO05D005762 1.1e-205 719.9 406 85.0
A09p64310 Brassica napus HOM05D004784 ORTHO05D005762 1.4e-205 719.5 409 84.1
BraA09t41774Z Brassica rapa HOM05D004784 ORTHO05D005762 1.4e-205 719.5 409 84.1
C08p14960 Brassica napus HOM05D004784 ORTHO05D005762 4.1e-205 718.0 410 84.4
BolC8t49127H Brassica oleracea HOM05D004784 ORTHO05D005762 4.1e-205 718.0 410 84.4
SGA_v2.0_scaffold7G03812 Striga asiatica HOM05D004784 ORTHO05D005762 7.0e-205 717.2 436 80.5
AUR62022970 Chenopodium quinoa HOM05D004784 ORTHO05D005762 9.2e-205 716.8 406 83.7
BraA08t35239Z Brassica rapa HOM05D004784 ORTHO05D005762 1.2e-204 716.5 410 84.4
AUR62012328 Chenopodium quinoa HOM05D004784 ORTHO05D005762 1.2e-204 716.5 406 83.3
Gorai.009G179900 Gossypium raimondii HOM05D004784 ORTHO05D005762 2.0e-204 715.7 383 90.1
Sc24g0000220 Simmondsia chinensis HOM05D004784 ORTHO05D005762 8.6e-203 710.3 405 83.0
Nn030s41595 Nelumbo nucifera HOM05D004784 ORTHO05D005762 2.3e-200 702.2 377 89.1
Sc05g0009310 Simmondsia chinensis HOM05D004784 ORTHO05D005762 5.2e-200 701.0 405 82.2
Oeu040336.3 Olea europaea HOM05D004784 ORTHO05D005762 6.4e-198 694.1 520 68.3
EL10Ac6g15683 Beta vulgaris HOM05D004784 ORTHO05D005762 1.4e-197 693.0 452 73.9
Lsat_1_v5_gn_7_16480 Lactuca sativa HOM05D004784 ORTHO05D005762 2.7e-196 688.7 394 84.0
ATR0794G107 Amborella trichopoda HOM05D004784 ORTHO05D005762 5.6e-194 681.0 415 80.2
HPP92_004130 Vanilla planifolia HOM05D004784 ORTHO05D005762 1.8e-192 676.0 413 78.7
A08p33210 Brassica napus HOM05D004784 ORTHO05D005762 2.3e-192 675.6 410 80.7
GSVIVG01012702001 Vitis vinifera HOM05D004784 ORTHO05D005762 2.6e-191 672.2 358 89.7
SEGI_27497 Sequoiadendron giganteum HOM05D004784 ORTHO05D005762 5.1e-187 657.9 409 76.3
HanXRQChr15g0470421 Helianthus annuus HOM05D004784 ORTHO05D005762 8.6e-187 657.1 356 87.4
Os04g0623800 Oryza sativa ssp. japonica HOM05D004784 ORTHO05D005762 8.6e-187 657.1 379 82.6
Zm00001eb070250 Zea mays HOM05D004784 ORTHO05D005762 1.5e-183 646.4 379 81.3
BcaB03g13227 Brassica carinata HOM05D004784 ORTHO05D005762 1.9e-181 639.4 358 85.2
ECA236G1893 Erigeron canadensis HOM05D004784 ORTHO05D005762 1.0e-179 633.6 406 77.1
Pp3c4_15010 Physcomitrium patens HOM05D004784 ORTHO05D005762 3.0e-171 605.5 405 70.4
Pp3c12_9500 Physcomitrium patens HOM05D004784 ORTHO05D005762 1.1e-170 603.6 404 70.8
AagrBONN_evm.TU.Sc2ySwM_344.1952 Anthoceros agrestis HOM05D004784 ORTHO05D005762 3.3e-170 602.1 406 71.9
TAR627G1106 Trochodendron aralioides HOM05D004784 ORTHO05D005762 4.7e-169 598.2 320 89.1
Mapoly0129s0024 Marchantia polymorpha HOM05D004784 ORTHO05D005762 1.3e-166 590.1 380 71.8
SMO352G0047 Selaginella moellendorffii HOM05D004784 ORTHO05D005762 2.6e-159 565.8 400 68.0
CSS0014504 Camellia sinensis var. sinensis HOM05D004784 ORTHO05D005762 1.0e-155 553.9 387 72.9
A06p08340 Brassica napus HOM05D004784 ORTHO05D005762 1.6e-153 546.6 409 68.5
TAR626G0807 Trochodendron aralioides HOM05D004784 ORTHO05D005762 1.9e-146 523.1 360 73.1
Actinidia26902 Actinidia chinensis HOM05D004784 ORTHO05D005762 8.4e-142 507.7 310 81.0
Cre03.g193750 Chlamydomonas reinhardtii HOM05D004784 ORTHO05D005762 8.7e-139 497.7 400 61.2
Atru.chr8.533 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-131 473.0 258 87.2
Eucgr.E03909 Eucalyptus grandis HOM05D004784 ORTHO05D005762 1.4e-128 463.8 245 90.6
PRCOL_00007041 Prasinoderma coloniale HOM05D004784 ORTHO05D005762 2.7e-124 449.5 368 61.1
MD05G1348800 Malus domestica HOM05D004784 ORTHO05D005762 1.4e-120 437.2 238 87.8
MCO15G045 Micromonas commoda HOM05D004784 ORTHO05D005762 4.2e-117 425.6 385 55.6
Lalb_Chr20g0118761 Lupinus albus HOM05D004784 ORTHO05D005762 4.1e-112 409.1 225 85.8
BraA06t24032Z Brassica rapa HOM05D000911 ORTHO05D001266 3.4e-106 389.4 239 77.8
Cpa.g.sc152.29 Carica papaya HOM05D004784 ORTHO05D005762 2.7e-100 369.8 195 91.8
Cfa026602 Carpinus fangiana HOM05D004784 ORTHO05D005762 7.3e-77 292.0 419 41.5
Haze_26660 Corylus avellana HOM05D004784 ORTHO05D005762 1.9e-72 277.3 390 42.8
CBR_g24348 Chara braunii HOM05D004784 ORTHO05D005762 1.0e-70 271.6 183 73.8
Sopen07g011340 Solanum pennellii HOM05D004784 ORTHO05D005762 8.1e-68 261.9 180 70.6
EL10Ac1g01135 Beta vulgaris HOM05D004784 ORTHO05D005762 2.4e-56 223.8 141 73.8
EL10Ac2g03767 Beta vulgaris HOM05D004784 ORTHO05D005762 4.2e-56 223.0 140 74.3
Atru.chr8.531 Acer truncatum HOM05D004784 ORTHO05D005762 2.3e-54 217.2 124 81.5
Actinidia05506 Actinidia chinensis HOM05D004784 ORTHO05D005762 3.2e-48 196.8 130 76.9
Actinidia15969 Actinidia chinensis HOM05D004784 ORTHO05D058202 4.1e-19 100.1 128 46.1
Actinidia11861 Actinidia chinensis HOM05D004784 ORTHO05D005762 6.9e-19 99.4 58 74.1
Peaxi162Scf00017g02640 Petunia axillaris HOM05D006894 ORTHO05D008724 1.1e-13 82.0 333 24.0
Peaxi162Scf00011g00531 Petunia axillaris HOM05D006894 ORTHO05D008724 4.3e-13 80.1 322 24.2
Lsat_1_v5_gn_9_118621 Lactuca sativa HOM05D006894 ORTHO05D008724 1.1e-11 75.5 334 24.3
PGR042G0448 Punica granatum HOM05D006894 ORTHO05D008724 1.2e-10 72.0 327 23.2


User provided reference genes

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