Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.4e-101 372.9 181 100.0
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.6e-60 236.5 151 77.5
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 9.7e-58 227.3 165 70.9
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 4.1e-56 221.9 151 72.8
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 1.2e-55 220.3 148 72.3
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 2.0e-55 219.5 150 72.0
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 3.5e-55 218.8 148 73.0
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 7.7e-55 217.6 150 72.0
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 1.7e-54 216.5 150 70.0
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 2.2e-54 216.1 148 70.9
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 6.5e-54 214.5 148 69.6
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 8.5e-54 214.2 148 70.3
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 8.5e-54 214.2 151 70.2
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 8.5e-54 214.2 150 69.3
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 1.1e-53 213.8 148 71.6
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 1.1e-53 213.8 151 68.9
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 1.9e-53 213.0 152 68.4
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.5e-53 212.6 148 70.3
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 2.5e-53 212.6 148 70.9
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 3.2e-53 212.2 150 68.7
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 4.2e-53 211.8 148 69.6
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 4.2e-53 211.8 148 69.6
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 5.5e-53 211.5 148 70.3
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 5.5e-53 211.5 150 68.0
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 5.5e-53 211.5 150 68.7
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 5.5e-53 211.5 168 63.7
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 7.2e-53 211.1 152 69.7
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 7.2e-53 211.1 148 70.9
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 9.4e-53 210.7 148 69.6
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 1.2e-52 210.3 148 69.6
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 1.6e-52 209.9 148 69.6
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 1.6e-52 209.9 148 69.6
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 2.1e-52 209.5 148 69.6
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 2.7e-52 209.1 150 69.3
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 2.7e-52 209.1 148 68.9
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 2.7e-52 209.1 148 68.9
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 2.7e-52 209.1 148 68.9
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 3.6e-52 208.8 150 68.7
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 3.6e-52 208.8 148 70.3
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 6.1e-52 208.0 148 69.6
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 6.1e-52 208.0 151 69.5
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 6.1e-52 208.0 148 68.9
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 8.0e-52 207.6 148 67.6
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 1.0e-51 207.2 148 67.6
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 1.4e-51 206.8 148 69.6
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 3.0e-51 205.7 149 67.8
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 4.0e-51 205.3 148 68.9
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 5.2e-51 204.9 148 68.2
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 6.8e-51 204.5 148 67.6
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 6.8e-51 204.5 149 69.8
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 6.8e-51 204.5 150 64.7
Oeu049726.1 Olea europaea HOM05D005528 ORTHO05D007066 6.8e-51 204.5 147 67.3
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 8.8e-51 204.1 149 69.1
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 8.8e-51 204.1 148 65.5
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 8.8e-51 204.1 150 68.0
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 8.8e-51 204.1 150 68.0
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 8.8e-51 204.1 150 68.0
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 1.2e-50 203.8 148 67.6
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.6e-50 202.6 148 66.9
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 2.6e-50 202.6 148 66.2
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 2.6e-50 202.6 150 65.3
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 2.6e-50 202.6 148 66.2
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 2.6e-50 202.6 151 66.2
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 2.6e-50 202.6 148 66.2
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 3.4e-50 202.2 148 66.2
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 7.5e-50 201.1 148 65.5
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 7.5e-50 201.1 148 66.2
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 7.5e-50 201.1 150 67.3
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 9.8e-50 200.7 148 64.9
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 1.3e-49 200.3 162 61.1
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.3e-49 200.3 148 67.6
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 1.3e-49 200.3 148 65.5
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 1.3e-49 200.3 148 64.2
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 2.8e-49 199.1 148 66.2
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 2.8e-49 199.1 148 64.2
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 2.8e-49 199.1 150 66.0
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 4.8e-49 198.4 148 64.9
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 4.8e-49 198.4 148 64.9
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 8.3e-49 197.6 148 64.2
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 8.3e-49 197.6 148 64.2
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 1.4e-48 196.8 150 66.0
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 2.4e-48 196.1 148 62.8
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 3.1e-48 195.7 150 63.3
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.1e-48 195.7 148 63.5
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 4.1e-48 195.3 151 64.2
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 5.4e-48 194.9 146 65.8
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 5.4e-48 194.9 148 65.5
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 7.0e-48 194.5 150 62.7
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 7.0e-48 194.5 150 63.3
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 9.1e-48 194.1 146 65.8
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 9.1e-48 194.1 194 52.6
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 1.2e-47 193.7 151 64.9
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 1.6e-47 193.4 148 64.2
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 2.0e-47 193.0 145 65.5
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 2.0e-47 193.0 146 64.4
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 2.0e-47 193.0 152 63.2
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 7.7e-47 191.0 150 61.3
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 1.0e-46 190.7 146 63.7
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 2.3e-46 189.5 158 60.8
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 7.2e-45 184.5 138 65.9
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 1.0e-43 180.6 148 60.1
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 1.0e-43 180.6 148 59.5
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 1.8e-43 179.9 150 59.3
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 2.3e-43 179.5 148 60.1
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 5.2e-43 178.3 148 56.8
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 8.9e-43 177.6 143 60.1
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 1.2e-42 177.2 148 57.4
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 1.1e-40 170.6 239 42.7
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 1.3e-33 147.1 149 49.0
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 1.7e-33 146.7 135 56.3
Rhsim13G0147900 Rhododendron simsii HOM05D005528 ORTHO05D007066 4.9e-33 145.2 197 44.2
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 7.8e-31 137.9 112 61.6
Haze_06901 Corylus avellana HOM05D005528 ORTHO05D007066 2.3e-30 136.3 138 53.6
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.1e-28 129.8 95 66.3
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 8.9e-27 124.4 147 46.9
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 1.2e-26 124.0 83 71.1
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 9.8e-26 120.9 145 42.8
MELO3C007429.2 Cucumis melo HOM05D005528 ORTHO05D007066 8.3e-25 117.9 104 55.8
AL7G31780 Arabidopsis lyrata HOM05D005528 ORTHO05D000003 2.4e-24 116.3 82 68.3
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 6.6e-22 108.2 98 58.2
Thhalv10011887m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 9.9e-18 94.4 60 75.0
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 3.2e-16 89.4 70 62.9
Thhalv10023148m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 3.0e-14 82.8 73 54.8
Glyma.07G264900 Glycine max HOM05D005528 ORTHO05D007066 2.4e-11 73.2 42 78.6
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 4.0e-11 72.4 147 29.9
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 4.4e-10 68.9 138 31.2
Glyma.07G264950 Glycine max HOM05D005528 ORTHO05D007066 1.3e-09 67.4 46 65.2
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 2.9e-09 66.2 49 63.3
Cfa025413 Carpinus fangiana HOM05D001262 ORTHO05D017802 7.1e-08 61.6 156 29.5
CBR_g44615 Chara braunii HOM05D001262 ORTHO05D001114 2.7e-07 59.7 144 31.9
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 1.3e-06 57.4 139 30.2
Os04g0669700 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 2.3e-06 56.6 46 52.2
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 2.3e-06 56.6 128 31.2


User provided reference genes

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