Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 0.0e+00 2963.3 1786 100.0
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 0.0e+00 2408.6 1879 81.1
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 0.0e+00 1324.7 1773 51.7
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 0.0e+00 1286.6 1735 47.7
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 0.0e+00 1249.2 1743 47.0
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 0.0e+00 1242.6 1746 46.7
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 0.0e+00 1222.2 1709 48.6
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 0.0e+00 1216.1 1754 46.1
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 0.0e+00 1211.1 1728 45.7
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 0.0e+00 1209.1 1754 48.1
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1189.1 1714 48.0
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 0.0e+00 1189.1 1714 48.0
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 0.0e+00 1154.4 1751 46.6
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 0.0e+00 1154.4 1764 46.6
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 0.0e+00 1138.3 1716 46.7
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 0.0e+00 1119.4 1758 46.5
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 0.0e+00 1112.4 1804 43.0
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 0.0e+00 1109.7 1684 45.6
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 0.0e+00 1109.7 1759 44.3
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 0.0e+00 1075.5 1706 43.1
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 3.2e-310 1069.3 1716 44.4
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 2.7e-309 1066.2 1700 43.6
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 5.8e-304 1048.5 1802 40.6
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 2.6e-296 1023.1 1884 40.4
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-292 1010.4 1696 42.2
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 5.1e-292 1008.8 1807 43.2
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 3.3e-291 1006.1 1642 44.4
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 8.4e-279 964.9 1831 39.5
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 6.0e-277 958.7 1741 41.9
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.1e-273 948.0 1697 39.5
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 1.7e-271 940.6 1666 41.5
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.2e-270 936.4 1702 43.1
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.6e-269 934.1 1690 40.9
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 2.8e-266 923.3 1694 40.9
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 5.3e-265 919.1 1679 40.3
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 7.7e-264 915.2 1718 40.5
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 1.7e-263 914.1 1755 38.5
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 6.7e-260 902.1 1752 39.0
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 2.0e-259 900.6 1748 40.2
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 9.7e-259 898.3 1773 39.4
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 1.1e-257 894.8 1746 39.1
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 4.5e-256 889.4 1273 45.4
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 7.7e-256 888.6 1705 39.1
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.8e-255 886.3 1835 38.0
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 1.4e-252 877.9 1741 40.1
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 2.3e-252 877.1 1777 37.1
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 8.2e-250 868.6 1723 39.3
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 1.2e-248 864.8 1769 37.5
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 1.2e-248 864.8 1660 39.6
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 2.2e-247 860.5 1753 39.2
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 8.5e-247 858.6 1761 39.8
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.1e-246 858.2 2107 35.1
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 3.2e-246 856.7 1860 38.4
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 7.2e-246 855.5 1767 37.6
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 7.2e-246 855.5 1697 40.1
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 2.8e-242 843.6 1687 37.6
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 8.2e-242 842.0 1735 38.2
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 1.2e-235 821.6 1707 38.8
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 3.7e-234 816.6 1772 36.6
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 1.4e-233 814.7 1585 40.0
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 6.1e-229 799.3 1716 37.1
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 4.0e-228 796.6 1700 37.8
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 1.3e-223 781.6 1666 37.2
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 2.1e-221 774.2 1714 36.1
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 6.0e-216 756.1 1692 38.4
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 3.0e-215 753.8 1801 35.3
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.8e-213 747.3 1772 35.2
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 4.4e-211 740.0 1669 37.3
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 4.6e-208 729.9 1715 35.6
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 1.3e-207 728.4 1687 36.0
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 4.3e-206 723.4 1118 42.5
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 5.6e-206 723.0 1451 40.6
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 1.4e-204 718.4 1676 35.8
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.8e-204 716.1 1713 34.4
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 1.0e-199 702.2 1727 34.0
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 2.8e-197 694.1 1698 35.8
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 4.7e-189 666.8 1768 32.9
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.1e-188 665.6 909 44.2
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 1.4e-180 638.6 1661 33.7
Gohir.A08G083000 Gossypium hirsutum HOM05D004493 ORTHO05D005117 1.3e-167 595.5 998 45.4
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 1.8e-167 595.1 1414 35.6
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 7.6e-163 579.7 1708 31.7
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.3e-162 578.9 1666 31.8
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.8e-156 558.5 752 45.1
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 1.4e-148 532.3 1693 29.9
Hund28035 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.0e-143 516.2 1446 32.3
Hund28037 Selenicereus undatus HOM05D004493 ORTHO05D005117 1.0e-143 516.2 1446 32.3
COL.COLO4_35068 Corchorus olitorius HOM05D004493 ORTHO05D005117 5.1e-143 513.8 970 40.5
Cpa.g.sc119.15 Carica papaya HOM05D004493 ORTHO05D005117 2.7e-136 491.5 886 39.5
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.3e-130 472.6 771 39.9
FAN11G3847 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.3e-119 435.3 907 40.1
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 4.1e-108 397.9 888 34.3
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.2e-104 386.3 443 46.5
unitig_0.g1239 Utricularia gibba HOM05D004493 ORTHO05D005117 1.1e-97 363.2 934 30.8
Nitab4.5_0000075g0170 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.2e-94 353.2 927 35.6
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 9.2e-84 317.0 1224 26.2
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 9.2e-84 317.0 609 35.6
Ah.06g182280 Amaranthus hybridus HOM05D004493 ORTHO05D005117 1.0e-82 313.5 960 34.3
COL.COLO4_35067 Corchorus olitorius HOM05D004493 ORTHO05D005117 5.8e-78 297.7 717 37.4
Peaxi162Scf00186g00168 Petunia axillaris HOM05D004493 ORTHO05D005117 1.7e-77 296.2 890 33.0
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.4e-76 293.1 558 35.8
Dinv13491 Davidia involucrata HOM05D004493 ORTHO05D005117 1.2e-75 290.0 669 40.8
CDE02G1557 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 3.0e-74 285.4 1290 28.9
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 5.1e-74 284.6 471 38.0
AagrBONN_evm.TU.Sc2ySwM_117.2650 Anthoceros agrestis HOM05D004493 ORTHO05D005117 1.4e-71 276.6 1035 27.1
Pp3c13_12950 Physcomitrium patens HOM05D004493 ORTHO05D005117 2.5e-65 255.8 1743 24.2
QL01p007909 Quercus lobata HOM05D004453 ORTHO05D005375 1.2e-62 246.9 676 33.9
Potri.001G001201 Populus trichocarpa HOM05D004493 ORTHO05D005117 7.6e-62 244.2 233 61.4
Potri.001G001250 Populus trichocarpa HOM05D004493 ORTHO05D005117 2.3e-58 232.6 352 45.7
vmacro09616 Vaccinium macrocarpon HOM05D004493 ORTHO05D005117 1.1e-57 230.3 693 34.5
Solyc02g032380.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.5e-57 229.2 358 43.0
MSTRG.929 Avicennia marina HOM05D004493 ORTHO05D005117 1.3e-56 226.9 846 31.1
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 3.8e-53 215.3 250 49.2
Hma1.2p1_0589F.1_g184740 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 4.9e-53 214.9 238 56.3
QL01p007891 Quercus lobata HOM05D004493 ORTHO05D005117 3.3e-49 202.2 255 51.8
Hund05058 Selenicereus undatus HOM05D004493 ORTHO05D005117 7.4e-49 201.1 242 47.5
Eucgr.J01832 Eucalyptus grandis HOM05D004493 ORTHO05D005117 2.1e-48 199.5 146 60.3
CDE02G2692 Ceratophyllum demersum HOM05D004493 ORTHO05D005117 2.0e-46 193.0 243 44.9
Hma1.2p1_0589F.1_g184760 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 5.8e-46 191.4 201 54.2
Hma1.2p1_0589F.1_g184750 Hydrangea macrophylla HOM05D004493 ORTHO05D005117 3.3e-41 175.6 492 31.7
BcaNung06979 Brassica carinata HOM05D004493 ORTHO05D005117 5.7e-41 174.9 198 52.0
SEGI_27502 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 2.8e-40 172.6 999 27.8
Solyc02g032490.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 4.6e-35 155.2 201 46.8
Solyc02g032450.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 2.3e-34 152.9 719 29.6
ATR0906G002 Amborella trichopoda HOM05D004493 ORTHO05D005117 2.6e-30 139.4 160 44.4
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.3e-29 137.1 94 64.9
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.4e-28 133.7 217 39.6
Peaxi162Scf00186g01613 Petunia axillaris HOM05D004493 ORTHO05D005117 8.8e-26 124.4 205 42.9
MSTRG.12812 Avicennia marina HOM05D004493 ORTHO05D005117 1.3e-24 120.6 141 51.1
CSS0040729 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 1.1e-23 117.5 136 52.9
Zm00001eb202920 Zea mays HOM05D004493 ORTHO05D005117 2.4e-23 116.3 140 42.1
Lj2A889T20 Lonicera japonica HOM05D004493 ORTHO05D005117 2.6e-22 112.8 724 28.0
Cpa.g.sc119.16 Carica papaya HOM05D004493 ORTHO05D005117 4.0e-18 99.0 81 61.7
SEGI_28014 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 7.4e-17 94.7 111 41.4
unitig_0.g1240 Utricularia gibba HOM05D004493 ORTHO05D005117 8.2e-16 91.3 219 37.0
FAN26G0295 Fragaria x ananassa HOM05D000290 ORTHO05D006676 2.6e-14 86.3 71 60.6
AagrBONN_evm.TU.Sc2ySwM_228.300 Anthoceros agrestis HOM05D004493 ORTHO05D005117 3.5e-14 85.9 328 26.5
FAN14G4108 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.5e-14 85.5 71 60.6
Os07g0685400 Oryza sativa ssp. japonica HOM05D004493 ORTHO05D005117 2.2e-13 83.2 133 40.6
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 6.5e-13 81.6 92 48.9
FAN14G5048 Fragaria x ananassa HOM05D004493 ORTHO05D005117 3.2e-12 79.3 66 59.1
ATR0906G001 Amborella trichopoda HOM05D004493 ORTHO05D005117 9.4e-12 77.8 922 23.5
FAN12G3781 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.1e-11 75.1 90 46.7
Cpa.g.sc119.17 Carica papaya HOM05D004493 ORTHO05D005117 1.0e-10 74.3 266 30.5
SEGI_11629 Sequoiadendron giganteum HOM05D004493 ORTHO05D005117 3.0e-10 72.8 159 34.0
MSTRG.12811 Avicennia marina HOM05D004493 ORTHO05D005117 5.7e-09 68.6 81 55.6
CSS0009629 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.5e-09 68.2 323 27.6
FAN10G2778 Fragaria x ananassa HOM05D004493 ORTHO05D005117 6.3e-08 65.1 47 59.6
RcHm_v2.0_Chr7g0214951 Rosa chinensis HOM05D004493 ORTHO05D005117 7.0e-07 61.6 62 58.1


User provided reference genes

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