Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G157800 Populus trichocarpa HOM05D006967 ORTHO05D008692 0.0e+00 1077.8 540 100.0
Sabra03G0114400 Salix brachista HOM05D006967 ORTHO05D008692 1.2e-241 839.7 487 87.7
Manes.18G124500 Manihot esculenta HOM05D006967 ORTHO05D008692 1.5e-218 763.1 542 69.9
Haze_05177 Corylus avellana HOM05D006967 ORTHO05D008692 1.7e-190 669.8 563 62.7
CiPaw.09G141400 Carya illinoinensis HOM05D006967 ORTHO05D008692 4.2e-189 665.2 546 63.6
Thecc.05G313500 Theobroma cacao HOM05D006967 ORTHO05D008692 9.0e-176 620.9 542 60.9
TWI63G0275 Tripterygium wilfordii HOM05D006967 ORTHO05D008692 2.7e-172 609.4 537 59.6
MD10G1221200 Malus domestica HOM05D006967 ORTHO05D008692 2.6e-167 592.8 540 55.4
Duzib177G0925 Durio zibethinus HOM05D006967 ORTHO05D008692 8.5e-166 587.8 542 57.7
Gorai.013G126100 Gossypium raimondii HOM05D006967 ORTHO05D008692 8.5e-166 587.8 543 58.0
Gohir.A13G109700 Gossypium hirsutum HOM05D006967 ORTHO05D008692 1.9e-165 586.6 540 57.6
RcHm_v2.0_Chr5g0022471 Rosa chinensis HOM05D006967 ORTHO05D008692 4.2e-165 585.5 538 57.4
Phvul.003G274600 Phaseolus vulgaris HOM05D006967 ORTHO05D008692 2.3e-163 579.7 545 54.9
Glyma.16G096000 Glycine max HOM05D006967 ORTHO05D008692 2.6e-162 576.2 542 55.5
Lj4g0002657 Lotus japonicus HOM05D006967 ORTHO05D008692 2.2e-161 573.2 536 56.2
Lalb_Chr09g0334571 Lupinus albus HOM05D006967 ORTHO05D008692 2.8e-161 572.8 533 56.8
CANSAT35G1213 Cannabis sativa HOM05D006967 ORTHO05D008692 8.2e-161 571.2 537 56.6
QL11p010599 Quercus lobata HOM05D006967 ORTHO05D008692 3.1e-160 569.3 537 57.9
Medtr8g070630 Medicago truncatula HOM05D006967 ORTHO05D008692 3.2e-157 559.3 545 54.3
Gohir.D13G112300 Gossypium hirsutum HOM05D006967 ORTHO05D008692 2.1e-156 556.6 480 59.8
FAN11G3906 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.6e-156 555.8 534 54.9
FvH4_3g13520 Fragaria vesca HOM05D006967 ORTHO05D008692 1.5e-154 550.4 534 54.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 1.3e-153 547.4 522 54.8
Aqoxy1G01340 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 1.1e-152 544.3 535 54.4
arahy.Tifrunner.gnm1.ann1.B3JMJ8 Arachis hypogaea HOM05D006967 ORTHO05D008692 3.1e-152 542.7 593 50.6
PSO675G8399 Papaver somniferum HOM05D006967 ORTHO05D008692 2.6e-151 539.7 543 50.5
FAN25G2282 Fragaria x ananassa HOM05D006967 ORTHO05D008692 2.2e-150 536.6 514 54.5
FAN21G4071 Fragaria x ananassa HOM05D006967 ORTHO05D008692 3.8e-150 535.8 546 52.7
vmacro03578 Vaccinium macrocarpon HOM05D006967 ORTHO05D008692 1.5e-149 533.9 583 49.7
CSS0034338 Camellia sinensis var. sinensis HOM05D006967 ORTHO05D008692 5.5e-149 531.9 421 62.9
PSO541G0117 Papaver somniferum HOM05D006967 ORTHO05D008692 1.2e-148 530.8 536 50.4
CAN.G40.7 Capsicum annuum HOM05D006967 ORTHO05D008692 3.6e-148 529.3 542 52.2
SHI28117 Sapria himalayana HOM05D006967 ORTHO05D008692 1.8e-147 526.9 538 52.6
Aa31LG6G2720 Aethionema arabicum HOM05D006967 ORTHO05D008692 4.4e-146 522.3 528 50.4
Eucgr.E04333 Eucalyptus grandis HOM05D006967 ORTHO05D008692 4.4e-146 522.3 534 51.1
Sopen01g015960 Solanum pennellii HOM05D006967 ORTHO05D008692 1.7e-145 520.4 543 51.6
TPR.G19829 Trifolium pratense HOM05D006967 ORTHO05D008692 2.8e-145 519.6 543 52.9
Sed0023777 Sechium edule HOM05D006967 ORTHO05D008692 1.6e-143 513.8 542 49.3
THA.LOC104806234 Tarenaya hassleriana HOM05D006967 ORTHO05D008692 1.3e-142 510.8 543 51.0
Cc09_g04480 Coffea canephora HOM05D006967 ORTHO05D008692 2.5e-141 506.5 581 48.7
Carub.0007s2087 Capsella rubella HOM05D006967 ORTHO05D008692 1.0e-139 501.1 511 51.9
CsaV3_5G000140 Cucumis sativus L. HOM05D006967 ORTHO05D008692 4.0e-139 499.2 541 49.0
Sp7g18650 Schrenkiella parvula HOM05D006967 ORTHO05D008692 8.8e-139 498.0 540 50.6
BraA01t01143Z Brassica rapa HOM05D006967 ORTHO05D008692 4.4e-138 495.7 518 51.7
MELO3C005917.2 Cucumis melo HOM05D006967 ORTHO05D008692 9.8e-138 494.6 542 47.8
A01p12010 Brassica napus HOM05D006967 ORTHO05D008692 3.7e-137 492.7 518 51.5
HanXRQChr14g0439851 Helianthus annuus HOM05D006967 ORTHO05D008692 1.1e-136 491.1 536 49.1
BcaNung03720 Brassica carinata HOM05D006967 ORTHO05D008692 1.8e-136 490.3 519 51.1
AL7G33600 Arabidopsis lyrata HOM05D006967 ORTHO05D008692 7.0e-136 488.4 511 50.7
Thhalv10024898m.g Eutrema salsugineum HOM05D006967 ORTHO05D008692 3.5e-135 486.1 526 51.3
FAN16G1037 Fragaria x ananassa HOM05D006967 ORTHO05D008692 7.7e-135 485.0 488 52.7
C01p14260 Brassica napus HOM05D006967 ORTHO05D008692 1.0e-134 484.6 518 51.2
BcaC09g51322 Brassica carinata HOM05D006967 ORTHO05D008692 1.7e-134 483.8 518 51.0
EL10Ac5g10560 Beta vulgaris HOM05D006967 ORTHO05D008692 3.8e-134 482.6 618 45.8
BolC1t01391H Brassica oleracea HOM05D006967 ORTHO05D008692 1.9e-133 480.3 518 50.6
Cpa.g.sc30.57 Carica papaya HOM05D006967 ORTHO05D008692 2.5e-133 479.9 479 54.3
Dinv05283 Davidia involucrata HOM05D006967 ORTHO05D008692 4.2e-133 479.2 423 57.2
MBI10_g30431_MAGBIO Magnolia biondii HOM05D006967 ORTHO05D008692 4.2e-133 479.2 437 56.3
Prupe.4G123400 Prunus persica HOM05D006967 ORTHO05D008692 4.2e-133 479.2 387 62.5
BcaNung03721 Brassica carinata HOM05D006967 ORTHO05D008692 2.1e-132 476.9 519 50.9
MSTRG.24877 Avicennia marina HOM05D006967 ORTHO05D008692 2.8e-132 476.5 540 50.4
ECA238G0649 Erigeron canadensis HOM05D006967 ORTHO05D008692 6.1e-132 475.3 530 50.0
Migut.K01517 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.2e-130 471.1 523 49.7
Migut.M02039 Erythranthe guttata HOM05D006967 ORTHO05D008692 3.4e-130 469.5 516 50.2
COL.COLO4_10527 Corchorus olitorius HOM05D001999 ORTHO05D001994 3.1e-128 463.0 450 54.7
Oeu008739.3 Olea europaea HOM05D006967 ORTHO05D008692 3.1e-128 463.0 469 50.5
Hund09497 Selenicereus undatus HOM05D006967 ORTHO05D008692 3.1e-128 463.0 569 46.7
ClCG01G000040 Citrullus lanatus HOM05D006967 ORTHO05D008692 4.5e-127 459.1 499 48.3
Lj2A340G21 Lonicera japonica HOM05D006967 ORTHO05D008692 8.6e-126 454.9 433 54.3
Nn7g38428 Nelumbo nucifera HOM05D006967 ORTHO05D008692 1.5e-125 454.1 393 58.3
Sopen01g019010 Solanum pennellii HOM05D006967 ORTHO05D008692 9.5e-125 451.4 697 39.7
arahy.Tifrunner.gnm1.ann1.S5Z5QJ Arachis hypogaea HOM05D006967 ORTHO05D008692 2.1e-124 450.3 566 46.1
Peaxi162Scf00715g00310 Petunia axillaris HOM05D006967 ORTHO05D008692 2.1e-124 450.3 481 51.8
Solyc01g049910.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 4.9e-121 439.1 476 50.6
Nitab4.5_0000217g0010 Nicotiana tabacum HOM05D006967 ORTHO05D008692 4.6e-119 432.6 431 53.6
Rhsim13G0136900 Rhododendron simsii HOM05D006967 ORTHO05D008692 6.0e-119 432.2 357 59.9
HPP92_009939 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.3e-118 430.3 539 44.7
SEGI_11534 Sequoiadendron giganteum HOM05D006967 ORTHO05D008692 8.9e-115 418.3 552 43.3
Ciclev10015668m.g Citrus clementina HOM05D006967 ORTHO05D008692 1.5e-114 417.5 380 59.5
arahy.Tifrunner.gnm1.ann1.IV6A0X Arachis hypogaea HOM05D006967 ORTHO05D008692 2.6e-114 416.8 563 44.0
VMungo0251G0412 Vigna mungo HOM05D006967 ORTHO05D008692 7.0e-112 408.7 407 52.8
Migut.G00899 Erythranthe guttata HOM05D006967 ORTHO05D008692 2.5e-109 400.2 429 51.3
AT4G20310 Arabidopsis thaliana HOM05D006967 ORTHO05D008692 1.1e-107 394.8 386 53.1
SGA_v2.0_scaffold62G21391 Striga asiatica HOM05D006967 ORTHO05D008692 4.0e-107 392.9 534 44.8
AUR62032339 Chenopodium quinoa HOM05D006967 ORTHO05D008692 1.5e-106 391.0 395 52.9
ATR0737G179 Amborella trichopoda HOM05D006967 ORTHO05D008692 2.9e-105 386.7 432 49.1
Nitab4.5_0001253g0030 Nicotiana tabacum HOM05D006967 ORTHO05D008692 4.1e-104 382.9 398 52.3
Solyc01g020520.4 Solanum lycopersicum HOM05D006967 ORTHO05D008692 3.3e-101 373.2 398 49.5
Ah.11g050600 Amaranthus hybridus HOM05D006967 ORTHO05D008692 4.3e-101 372.9 382 52.9
Sc05g0001460 Simmondsia chinensis HOM05D006967 ORTHO05D008692 5.6e-101 372.5 382 51.3
CARHR227130 Cardamine hirsuta HOM05D006967 ORTHO05D008692 4.4e-98 362.8 394 50.8
AUR62028614 Chenopodium quinoa HOM05D006967 ORTHO05D008692 9.9e-98 361.7 444 46.6
TAR624G1073 Trochodendron aralioides HOM05D006967 ORTHO05D008692 1.1e-85 321.6 281 57.7
Potri.001G073200 Populus trichocarpa HOM05D006967 ORTHO05D008692 2.1e-79 300.8 229 69.0
PGSC0003DMG402016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 1.3e-73 281.6 305 50.5
TAR624G0936 Trochodendron aralioides HOM05D006967 ORTHO05D008692 4.2e-72 276.6 229 63.3
Psat4g112640 Pisum sativum HOM05D006967 ORTHO05D008692 1.3e-68 265.0 233 57.5
AagrBONN_evm.TU.Sc2ySwM_368.2736 Anthoceros agrestis HOM05D006967 ORTHO05D008692 3.0e-62 243.8 520 32.7
Zm00001eb158090 Zea mays HOM05D006967 ORTHO05D008692 3.9e-62 243.4 534 31.5
Os01g0654200 Oryza sativa ssp. japonica HOM05D006967 ORTHO05D008692 8.7e-62 242.3 339 40.7
Ca_22538_v3 Cicer arietinum L. HOM05D006967 ORTHO05D008692 8.5e-49 199.1 286 41.6
SMO176G0004 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 9.7e-37 159.1 379 31.1
CAN.G40.9 Capsicum annuum HOM05D006967 ORTHO05D008692 1.3e-33 148.7 212 40.6
CBR_g19989 Chara braunii HOM05D006967 ORTHO05D008692 2.5e-24 117.9 220 31.4
CBR_g19993 Chara braunii HOM05D006967 ORTHO05D008692 4.7e-23 113.6 202 29.7
HPP92_007230 Vanilla planifolia HOM05D006967 ORTHO05D008692 5.2e-22 110.2 181 38.7
SMO365G0010 Selaginella moellendorffii HOM05D006967 ORTHO05D008692 1.5e-21 108.6 158 39.2
AUR62028613 Chenopodium quinoa HOM05D006967 ORTHO05D008692 2.0e-21 108.2 117 54.7
AUR62032338 Chenopodium quinoa HOM05D006967 ORTHO05D008692 4.4e-21 107.1 115 54.8
Psat4g112600 Pisum sativum HOM05D006967 ORTHO05D008692 1.3e-20 105.5 147 44.9
Psat6g225040 Pisum sativum HOM05D006967 ORTHO05D008692 1.2e-15 89.0 105 46.7
Aqoxy4G01848 Aquilegia oxysepala HOM05D006967 ORTHO05D008692 3.4e-13 80.9 93 46.2
Migut.D00002 Erythranthe guttata HOM05D006967 ORTHO05D008692 1.4e-11 75.5 112 41.1
PGSC0003DMG401016926 Solanum tuberosum HOM05D006967 ORTHO05D008692 8.6e-09 66.2 256 28.5
HPP92_007178 Vanilla planifolia HOM05D006967 ORTHO05D008692 2.8e-07 61.2 91 35.2


User provided reference genes

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