Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.5e-32 140.6 68 100.0
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 5.9e-16 87.0 48 85.4
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.9e-16 87.0 48 87.5
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 5.9e-16 87.0 48 87.5
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 5.9e-16 87.0 48 87.5
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 7.7e-16 86.7 48 85.4
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 7.7e-16 86.7 48 85.4
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 7.7e-16 86.7 48 85.4
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 85.4
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 85.4
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 81.2
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 83.3
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 85.4
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 1.3e-15 85.9 48 83.3
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 85.4
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 85.4
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 83.3
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 85.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 83.3
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 85.4
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 85.4
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 83.3
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 83.3
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.7e-15 85.5 48 83.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 2.2e-15 85.1 48 85.4
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 2.2e-15 85.1 48 85.4
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 2.9e-15 84.7 48 81.2
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 2.9e-15 84.7 48 83.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.9e-15 84.7 48 85.4
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 2.9e-15 84.7 48 83.3
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 3.8e-15 84.3 53 75.5
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 3.8e-15 84.3 48 81.2
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-15 84.3 48 81.2
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-15 84.3 48 81.2
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.8e-15 84.3 48 81.2
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 5.0e-15 84.0 48 83.3
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 5.0e-15 84.0 48 83.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 5.0e-15 84.0 48 81.2
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 5.0e-15 84.0 48 83.3
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 81.2
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 79.2
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 81.2
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 81.2
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 83.3
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 79.2
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 81.2
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.5e-15 83.6 48 81.2
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 79.2
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 81.2
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 79.2
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 81.2
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 83.3
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 81.2
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 8.5e-15 83.2 48 83.3
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 79.2
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 79.2
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 1.1e-14 82.8 63 63.5
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 79.2
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 1.1e-14 82.8 48 79.2
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.1e-14 82.8 48 79.2
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 81.2
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 83.3
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 81.2
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 79.2
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 77.1
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 81.2
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 77.1
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 79.2
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 1.1e-14 82.8 48 81.2
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 81.2
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 83.3
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 83.3
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 83.3
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 83.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 83.3
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 1.5e-14 82.4 48 77.1
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-14 82.0 48 81.2
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 1.9e-14 82.0 48 77.1
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 1.9e-14 82.0 48 81.2
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 2.5e-14 81.6 46 84.8
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 83.3
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 77.1
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 2.5e-14 81.6 50 78.0
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 2.5e-14 81.6 45 88.9
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 79.2
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 75.0
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 75.0
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 75.0
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 75.0
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 2.5e-14 81.6 48 79.2
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 3.2e-14 81.3 46 82.6
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 3.2e-14 81.3 48 79.2
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 79.2
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 4.2e-14 80.9 45 86.7
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 4.2e-14 80.9 48 77.1
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 5.5e-14 80.5 48 72.9
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 5.5e-14 80.5 48 79.2
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 5.5e-14 80.5 48 77.1
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 7.2e-14 80.1 48 79.2
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 7.2e-14 80.1 48 77.1
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 9.4e-14 79.7 48 77.1
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 9.4e-14 79.7 48 77.1
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 9.4e-14 79.7 48 72.9
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 1.2e-13 79.3 48 75.0
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 2.1e-13 78.6 48 77.1
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 2.7e-13 78.2 48 77.1
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 2.7e-13 78.2 48 75.0
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 2.7e-13 78.2 50 76.0
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 3.6e-13 77.8 48 75.0
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 4.7e-13 77.4 53 71.7
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 6.1e-13 77.0 45 82.2
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 6.1e-13 77.0 48 72.9
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.4e-12 75.9 45 77.8
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.8e-12 75.5 48 70.8
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 4.0e-12 74.3 48 72.9
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 4.0e-12 74.3 48 72.9
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 1.2e-11 72.8 48 70.8
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-11 72.0 48 72.9
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 2.0e-11 72.0 47 72.3
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 4.4e-11 70.9 40 85.0
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 4.4e-11 70.9 50 68.0
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 5.7e-11 70.5 45 73.3
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 7.5e-11 70.1 48 68.8
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.3e-10 69.3 40 80.0
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 2.8e-10 68.2 45 66.7
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 3.7e-10 67.8 44 72.7
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 6.3e-10 67.0 48 66.7
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 2.4e-09 65.1 36 83.3
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 4.1e-09 64.3 48 68.8
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 4.5e-08 60.8 39 69.2
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 5.9e-08 60.5 33 81.8
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 3.8e-07 57.8 35 74.3
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 1.9e-06 55.5 55 52.7
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.3e-06 54.7 35 71.4


User provided reference genes

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