Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G140000 Populus trichocarpa HOM05D005474 ORTHO05D006551 8.9e-248 859.8 416 100.0
Potri.001G091600 Populus trichocarpa HOM05D005474 ORTHO05D006551 8.7e-219 763.5 426 88.3
Sabra03G0101000 Salix brachista HOM05D005474 ORTHO05D006551 2.9e-214 748.4 519 74.2
Sabra01G0068000 Salix brachista HOM05D005474 ORTHO05D006551 3.3e-210 734.9 428 85.0
Manes.01G049100 Manihot esculenta HOM05D005474 ORTHO05D006551 6.7e-195 684.1 426 78.9
Prupe.5G120100 Prunus persica HOM05D005474 ORTHO05D006551 2.5e-181 639.0 416 73.3
MD14G1128900 Malus domestica HOM05D005474 ORTHO05D006551 1.3e-177 626.7 416 71.4
QL02p030435 Quercus lobata HOM05D005474 ORTHO05D006551 2.0e-175 619.4 418 71.5
Atru.chr9.1979 Acer truncatum HOM05D005474 ORTHO05D006551 7.7e-175 617.5 420 72.1
Atru.chr9.1994 Acer truncatum HOM05D005474 ORTHO05D006551 1.3e-174 616.7 420 72.1
MD06G1107100 Malus domestica HOM05D005474 ORTHO05D006551 8.5e-174 614.0 416 70.4
Gohir.D12G237600 Gossypium hirsutum HOM05D005474 ORTHO05D006551 1.8e-171 606.3 416 70.4
Ciclev10020308m.g Citrus clementina HOM05D005474 ORTHO05D006551 2.3e-171 605.9 423 69.7
Dinv38831 Davidia involucrata HOM05D005474 ORTHO05D006551 2.3e-171 605.9 425 70.6
Gorai.008G254400 Gossypium raimondii HOM05D005474 ORTHO05D006551 3.0e-171 605.5 416 70.2
GSVIVG01019532001 Vitis vinifera HOM05D005474 ORTHO05D006551 6.7e-171 604.4 418 70.6
Thecc.03G298100 Theobroma cacao HOM05D005474 ORTHO05D006551 8.8e-171 604.0 424 69.6
TWI12G0204 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 1.1e-170 603.6 428 70.3
COL.COLO4_10702 Corchorus olitorius HOM05D005474 ORTHO05D006551 2.6e-170 602.4 424 69.1
Haze_09055 Corylus avellana HOM05D005474 ORTHO05D006551 3.3e-170 602.1 423 70.2
TWI56G1439 Tripterygium wilfordii HOM05D005474 ORTHO05D006551 5.7e-170 601.3 428 69.4
Cfa012014 Carpinus fangiana HOM05D005474 ORTHO05D006551 1.7e-169 599.7 423 69.7
Gohir.A12G236400 Gossypium hirsutum HOM05D005474 ORTHO05D006551 2.2e-169 599.4 416 69.2
Duzib084G1138 Durio zibethinus HOM05D005474 ORTHO05D006551 2.4e-168 595.9 424 69.3
RcHm_v2.0_Chr7g0194791 Rosa chinensis HOM05D005474 ORTHO05D006551 4.1e-168 595.1 420 70.0
FvH4_5g04600 Fragaria vesca HOM05D005474 ORTHO05D006551 7.0e-168 594.3 420 68.8
FAN18G1504 Fragaria x ananassa HOM05D005474 ORTHO05D006551 7.0e-168 594.3 416 68.8
Cpa.g.sc128.67 Carica papaya HOM05D005474 ORTHO05D006551 1.2e-167 593.6 422 67.8
CSS0001924 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.0e-167 592.8 431 68.0
FAN04G1263 Fragaria x ananassa HOM05D005474 ORTHO05D006551 3.5e-167 592.0 420 69.0
FAN08G2748 Fragaria x ananassa HOM05D005474 ORTHO05D006551 4.5e-167 591.7 420 68.6
FAN18G3330 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.3e-166 590.1 416 68.5
Actinidia22160 Actinidia chinensis HOM05D005474 ORTHO05D006551 1.7e-166 589.7 423 68.3
Glyma.01G225700 Glycine max HOM05D005474 ORTHO05D006551 1.5e-165 586.6 421 67.5
FAN13G0565 Fragaria x ananassa HOM05D005474 ORTHO05D006551 1.2e-164 583.6 415 68.0
Eucgr.D01738 Eucalyptus grandis HOM05D005474 ORTHO05D006551 6.1e-164 581.3 417 66.9
TPR.G25600 Trifolium pratense HOM05D005474 ORTHO05D006551 8.0e-164 580.9 421 65.8
Medtr5g009240 Medicago truncatula HOM05D005474 ORTHO05D006551 2.3e-163 579.3 416 66.3
VMungo1215G0769 Vigna mungo HOM05D005474 ORTHO05D006551 2.6e-162 575.9 427 65.6
Phvul.002G164600 Phaseolus vulgaris HOM05D005474 ORTHO05D006551 1.3e-161 573.5 424 66.5
Psat2g185600 Pisum sativum HOM05D005474 ORTHO05D006551 2.2e-161 572.8 421 65.1
PGR042G2806 Punica granatum HOM05D005474 ORTHO05D006551 2.8e-161 572.4 422 64.9
CiPaw.11G121500 Carya illinoinensis HOM05D005474 ORTHO05D006551 1.1e-160 570.5 393 70.2
Ca_24501_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.4e-160 570.1 425 65.2
Ca_29734_v3 Cicer arietinum L. HOM05D005474 ORTHO05D006551 1.4e-160 570.1 425 65.2
Lalb_Chr05g0211531 Lupinus albus HOM05D005474 ORTHO05D006551 3.1e-160 568.9 422 66.1
TAR629G2557 Trochodendron aralioides HOM05D005474 ORTHO05D006551 4.1e-160 568.5 424 65.8
Rhsim02G0243400 Rhododendron simsii HOM05D005474 ORTHO05D006551 1.2e-159 567.0 424 66.0
Lj2C167G11 Lonicera japonica HOM05D005474 ORTHO05D006551 2.0e-159 566.2 422 66.6
Lalb_Chr16g0376951 Lupinus albus HOM05D005474 ORTHO05D006551 2.7e-159 565.8 421 65.3
vmacro11424 Vaccinium macrocarpon HOM05D005474 ORTHO05D006551 3.5e-159 565.5 452 63.7
TAR374G0037 Trochodendron aralioides HOM05D005474 ORTHO05D006551 1.7e-158 563.1 425 66.1
Aqoxy7G00102 Aquilegia oxysepala HOM05D005474 ORTHO05D006551 3.8e-158 562.0 421 64.4
CsaV3_5G001990 Cucumis sativus L. HOM05D005474 ORTHO05D006551 5.0e-158 561.6 421 66.7
CANSAT21G1635 Cannabis sativa HOM05D005474 ORTHO05D006551 4.2e-157 558.5 418 65.8
ClCG01G001840 Citrullus lanatus HOM05D005474 ORTHO05D006551 1.2e-156 557.0 416 66.1
MELO3C005754.2 Cucumis melo HOM05D005474 ORTHO05D006551 2.1e-156 556.2 421 66.3
Sed0020716 Sechium edule HOM05D005474 ORTHO05D006551 8.0e-156 554.3 418 65.1
Cc08_g16070 Coffea canephora HOM05D005474 ORTHO05D006551 2.6e-154 549.3 415 63.4
Sed0014344 Sechium edule HOM05D005474 ORTHO05D006551 2.6e-154 549.3 423 65.5
Glyma.11G017200 Glycine max HOM05D005474 ORTHO05D006551 8.3e-153 544.3 391 67.3
arahy.Tifrunner.gnm1.ann1.Z0ACGZ Arachis hypogaea HOM05D005474 ORTHO05D006551 1.7e-150 536.6 496 54.8
LjContig00312_ERROPOS870357g0016174 Lotus japonicus HOM05D005474 ORTHO05D006551 8.6e-150 534.3 426 62.7
arahy.Tifrunner.gnm1.ann1.1UFI8K Arachis hypogaea HOM05D005474 ORTHO05D006551 1.2e-146 523.9 524 52.1
Oeu063522.1 Olea europaea HOM05D005474 ORTHO05D006551 9.8e-146 520.8 421 61.0
PSO170G1345 Papaver somniferum HOM05D005474 ORTHO05D006551 2.2e-145 519.6 430 61.2
CiPaw.12G083000 Carya illinoinensis HOM05D005474 ORTHO05D006551 8.3e-145 517.7 416 60.3
THA.LOC104806435 Tarenaya hassleriana HOM05D005474 ORTHO05D006551 1.2e-143 513.8 420 60.0
Migut.E01253 Erythranthe guttata HOM05D005474 ORTHO05D006551 2.0e-143 513.1 420 61.0
Hund14220 Selenicereus undatus HOM05D005474 ORTHO05D006551 7.8e-143 511.1 432 56.9
HanXRQChr03g0083521 Helianthus annuus HOM05D005474 ORTHO05D006551 1.5e-141 506.9 389 62.7
Lsat_1_v5_gn_6_83981 Lactuca sativa HOM05D005474 ORTHO05D006551 2.5e-141 506.1 426 59.4
Nitab4.5_0002782g0080 Nicotiana tabacum HOM05D005474 ORTHO05D006551 2.5e-141 506.1 418 60.0
SGA_v2.0_scaffold144G35858 Striga asiatica HOM05D005474 ORTHO05D006551 2.5e-141 506.1 416 59.6
SalBow1G1678 Salvia bowleyana HOM05D005474 ORTHO05D006551 4.3e-141 505.4 415 59.0
SalBow8G3265 Salvia bowleyana HOM05D005474 ORTHO05D006551 2.1e-140 503.1 415 58.6
HPP92_026770 Vanilla planifolia HOM05D005474 ORTHO05D006551 3.6e-140 502.3 424 58.3
CAN.G532.121 Capsicum annuum HOM05D005474 ORTHO05D006551 6.2e-140 501.5 419 59.4
SalBow1G8106 Salvia bowleyana HOM05D005474 ORTHO05D006551 1.0e-139 500.7 415 58.6
Sp7g21810 Schrenkiella parvula HOM05D005474 ORTHO05D006551 1.4e-139 500.4 415 58.8
CARHR231240 Cardamine hirsuta HOM05D005474 ORTHO05D006551 2.3e-139 499.6 421 58.4
Sopen08g030580 Solanum pennellii HOM05D005474 ORTHO05D006551 4.0e-139 498.8 420 58.6
Solyc08g082320.3 Solanum lycopersicum HOM05D005474 ORTHO05D006551 5.2e-139 498.4 420 58.8
MSTRG.13885 Avicennia marina HOM05D005474 ORTHO05D006551 6.8e-139 498.0 466 54.5
AUR62019839 Chenopodium quinoa HOM05D005474 ORTHO05D006551 5.8e-138 495.0 421 55.6
ATR0602G179 Amborella trichopoda HOM05D005474 ORTHO05D006551 7.5e-138 494.6 463 53.8
AUR62010840 Chenopodium quinoa HOM05D005474 ORTHO05D006551 1.3e-137 493.8 421 55.6
Peaxi162Scf00074g00931 Petunia axillaris HOM05D005474 ORTHO05D006551 3.7e-137 492.3 394 62.7
Zm00001eb277940 Zea mays HOM05D005474 ORTHO05D006551 4.9e-137 491.9 411 57.2
Aa31LG6G7070 Aethionema arabicum HOM05D005474 ORTHO05D006551 8.3e-137 491.1 424 55.9
PGSC0003DMG400012286 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.4e-136 489.6 422 57.6
ECA240G1977 Erigeron canadensis HOM05D005474 ORTHO05D006551 5.4e-136 488.4 418 59.6
Os06g0529800 Oryza sativa ssp. japonica HOM05D005474 ORTHO05D006551 5.4e-136 488.4 417 55.9
Thhalv10025382m.g Eutrema salsugineum HOM05D005474 ORTHO05D006551 7.0e-136 488.0 421 56.8
unitig_0.g387 Utricularia gibba HOM05D005474 ORTHO05D006551 1.7e-134 483.4 408 57.8
PSO063G4762 Papaver somniferum HOM05D005474 ORTHO05D006551 1.5e-133 480.3 404 60.4
BcaNung01092 Brassica carinata HOM05D005474 ORTHO05D006551 3.3e-133 479.2 418 56.5
Sc22g0005000 Simmondsia chinensis HOM05D005474 ORTHO05D006551 7.3e-133 478.0 410 56.8
BolC1t01832H Brassica oleracea HOM05D005474 ORTHO05D006551 9.5e-133 477.6 429 57.3
Carub.0007s1727 Capsella rubella HOM05D005474 ORTHO05D006551 9.5e-133 477.6 428 57.0
EL10Ac5g12915 Beta vulgaris HOM05D005474 ORTHO05D006551 1.6e-132 476.9 455 51.6
AL7G29500 Arabidopsis lyrata HOM05D005474 ORTHO05D006551 2.1e-132 476.5 458 52.6
AT4G23860 Arabidopsis thaliana HOM05D005474 ORTHO05D006551 3.1e-131 472.6 462 51.9
BcaC09g50941 Brassica carinata HOM05D005474 ORTHO05D006551 4.4e-130 468.8 418 56.5
A01p15160 Brassica napus HOM05D005474 ORTHO05D006551 4.4e-130 468.8 420 55.7
C01p19060 Brassica napus HOM05D005474 ORTHO05D006551 4.4e-130 468.8 418 56.5
BraA01t01454Z Brassica rapa HOM05D005474 ORTHO05D006551 7.5e-130 468.0 418 56.2
Oeu034333.1 Olea europaea HOM05D005474 ORTHO05D006551 1.9e-128 463.4 366 61.5
Hma1.2p1_1746F.1_g300392 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.2e-124 450.7 344 67.2
Hma1.2p1_1746F.1_g300400 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 1.2e-124 450.7 344 67.2
Pp3c7_4800 Physcomitrium patens HOM05D005474 ORTHO05D006551 2.9e-105 386.3 437 46.2
SMO200G0193 Selaginella moellendorffii HOM05D005474 ORTHO05D006551 6.4e-105 385.2 410 46.8
Mapoly0095s0049 Marchantia polymorpha HOM05D005474 ORTHO05D006551 1.1e-104 384.4 434 44.9
Pp3c18_8230 Physcomitrium patens HOM05D005474 ORTHO05D006551 1.9e-104 383.6 414 47.3
MBI06_g08456_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 8.7e-102 374.8 426 49.1
CDE02G2859 Ceratophyllum demersum HOM05D002290 ORTHO05D002532 2.1e-95 353.6 269 63.9
Nn3g19016 Nelumbo nucifera HOM05D005474 ORTHO05D006551 6.0e-95 352.1 423 48.0
PGSC0003DMG401028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 6.0e-87 325.5 277 58.1
DCAR_027700 Daucus carota HOM05D005474 ORTHO05D006551 5.1e-86 322.4 415 42.7
CSS0018913 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 3.6e-79 299.7 170 78.2
SEGI_30990 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.1e-78 295.8 425 38.1
CSS0034140 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.5e-72 276.9 140 84.3
TAR636G0569 Trochodendron aralioides HOM05D005474 ORTHO05D006551 5.1e-70 269.2 158 75.3
CBR_g50475 Chara braunii HOM05D005474 ORTHO05D006551 5.7e-69 265.8 541 33.1
CSS0004779 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 7.2e-64 248.8 144 77.8
PSO017G5523 Papaver somniferum HOM05D005474 ORTHO05D006551 2.8e-52 210.3 121 74.4
CSS0021446 Camellia sinensis var. sinensis HOM05D005474 ORTHO05D006551 2.3e-46 190.7 90 87.8
PGSC0003DMG400011405 Solanum tuberosum HOM05D005474 ORTHO05D006551 2.3e-38 164.1 197 45.2
unitig_0.g2293 Utricularia gibba HOM05D005474 ORTHO05D006551 2.6e-37 160.6 228 41.2
Duzib084G0281 Durio zibethinus HOM05D005474 ORTHO05D006551 8.9e-30 135.6 81 74.1
Hma1.2p1_1746F.1_g300390 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.0e-26 124.4 73 78.1
Hma1.2p1_1746F.1_g300398 Hydrangea macrophylla HOM05D005474 ORTHO05D006551 2.0e-26 124.4 73 78.1
SEGI_08425 Sequoiadendron giganteum HOM05D005474 ORTHO05D006551 5.0e-25 119.8 66 77.3
Ah.07g197430 Amaranthus hybridus HOM05D005474 ORTHO05D006551 4.7e-23 113.2 132 44.7
SHI06991 Sapria himalayana HOM05D005474 ORTHO05D006551 8.0e-23 112.5 59 79.7
CDE08G0829 Ceratophyllum demersum HOM05D005474 ORTHO05D006551 2.4e-19 100.9 66 72.7
Cfa025394 Carpinus fangiana HOM05D005474 ORTHO05D122676 5.6e-16 89.7 179 33.5
MBI18_g28764_MAGBIO Magnolia biondii HOM05D005474 ORTHO05D006551 1.4e-14 85.1 61 68.9
PGSC0003DMG402028714 Solanum tuberosum HOM05D005474 ORTHO05D006551 1.8e-14 84.7 74 60.8
Nitab4.5_0000829g0030 Nicotiana tabacum HOM05D005474 ORTHO05D006551 7.5e-13 79.3 75 58.7


User provided reference genes

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