Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.003G136600 Populus trichocarpa HOM05D001384 ORTHO05D001215 2.2e-21 105.1 70 100.0
CiPaw.11G124600 Carya illinoinensis HOM05D001384 ORTHO05D001215 3.5e-11 71.2 71 66.2
Sed0024129 Sechium edule HOM05D001384 ORTHO05D001215 1.0e-10 69.7 60 61.7
ClCG07G014860 Citrullus lanatus HOM05D001384 ORTHO05D001215 1.3e-10 69.3 62 67.7
Duzib068G0580 Durio zibethinus HOM05D001384 ORTHO05D001215 1.1e-09 66.2 71 66.2
PGR042G2194 Punica granatum HOM05D001384 ORTHO05D001215 2.5e-09 65.1 66 69.7
Sed0009789 Sechium edule HOM05D001384 ORTHO05D001215 2.5e-09 65.1 72 56.9
TWI15G0052 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.5e-09 65.1 67 73.1
MELO3C032818.2 Cucumis melo HOM05D001384 ORTHO05D001215 3.2e-09 64.7 62 62.9
Thecc.03G292300 Theobroma cacao HOM05D001384 ORTHO05D001215 4.2e-09 64.3 71 63.4
Potri.001G094700 Populus trichocarpa HOM05D001384 ORTHO05D001215 5.5e-09 63.9 70 68.6
TWI81G0992 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 1.6e-08 62.4 69 59.4
Duzib205G1079 Durio zibethinus HOM05D001384 ORTHO05D001215 2.1e-08 62.0 71 63.4
TAR375G0324 Trochodendron aralioides HOM05D001384 ORTHO05D001215 2.1e-08 62.0 66 63.6
CsaV3_4G006390 Cucumis sativus L. HOM05D001384 ORTHO05D001215 2.7e-08 61.6 57 64.9
Gohir.A12G234600 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.6e-08 61.2 71 60.6
QL02p031550 Quercus lobata HOM05D001384 ORTHO05D001215 3.6e-08 61.2 66 62.1
Duzib084G1120 Durio zibethinus HOM05D001384 ORTHO05D001215 6.1e-08 60.5 71 54.9
A04p00990 Brassica napus HOM05D001384 ORTHO05D001215 8.0e-08 60.1 67 59.7
Ciclev10023159m.g Citrus clementina HOM05D001384 ORTHO05D001215 8.0e-08 60.1 75 69.3
Gorai.008G252400 Gossypium raimondii HOM05D001384 ORTHO05D001215 8.0e-08 60.1 71 60.6
Actinidia27339 Actinidia chinensis HOM05D001384 ORTHO05D001215 1.0e-07 59.7 70 58.6
C04p31180 Brassica napus HOM05D001384 ORTHO05D001215 1.0e-07 59.7 61 60.7
BolC4t24669H Brassica oleracea HOM05D001384 ORTHO05D001215 1.0e-07 59.7 61 60.7
Gohir.D12G235700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.0e-07 59.7 71 59.2
AL4G45630 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 1.4e-07 59.3 55 60.0
AT2G46330 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 1.4e-07 59.3 55 60.0
BraA04t15816Z Brassica rapa HOM05D001384 ORTHO05D001215 1.4e-07 59.3 61 59.0
AT3G61640 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 2.3e-07 58.5 67 58.2
arahy.Tifrunner.gnm1.ann1.Y9NP63 Arachis hypogaea HOM05D001384 ORTHO05D001215 2.3e-07 58.5 61 67.2
BcaB02g08150 Brassica carinata HOM05D001384 ORTHO05D001215 2.3e-07 58.5 65 58.5
Ca_17497_v3 Cicer arietinum L. HOM05D001384 ORTHO05D001215 2.3e-07 58.5 65 53.8
DCAR_006964 Daucus carota HOM05D001384 ORTHO05D001215 2.3e-07 58.5 57 54.4
Lj4g0006841 Lotus japonicus HOM05D001384 ORTHO05D001215 2.3e-07 58.5 67 61.2
TAR636G2986 Trochodendron aralioides HOM05D001384 ORTHO05D001215 2.3e-07 58.5 66 71.2
Aa31LG10G15620 Aethionema arabicum HOM05D001384 ORTHO05D001215 3.0e-07 58.2 55 61.8
Glyma.11G018900 Glycine max HOM05D001384 ORTHO05D001215 3.0e-07 58.2 59 61.0
Thecc.01G347500 Theobroma cacao HOM05D001384 ORTHO05D001215 3.0e-07 58.2 65 60.0
Gohir.A12G110700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.0e-07 57.8 61 63.9
Gohir.D12G114000 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.0e-07 57.8 61 63.9
Phvul.002G296000 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 4.0e-07 57.8 75 48.0
BcaC02g10241 Brassica carinata HOM05D001384 ORTHO05D001215 5.2e-07 57.4 61 59.0
AL6G35460 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 6.7e-07 57.0 61 70.5
AT5G24105 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 6.7e-07 57.0 61 57.4
arahy.Tifrunner.gnm1.ann1.T3QZI5 Arachis hypogaea HOM05D001384 ORTHO05D001215 6.7e-07 57.0 62 66.1
CiPaw.01G072100 Carya illinoinensis HOM05D001384 ORTHO05D001215 6.7e-07 57.0 74 50.0
COL.COLO4_06332 Corchorus olitorius HOM05D001384 ORTHO05D001215 6.7e-07 57.0 65 60.0
Dinv32554 Davidia involucrata HOM05D001384 ORTHO05D001215 6.7e-07 57.0 64 65.6
MD07G1144900 Malus domestica HOM05D001384 ORTHO05D001215 6.7e-07 57.0 35 80.0
GSVIVG01028741001 Vitis vinifera HOM05D001384 ORTHO05D001215 6.7e-07 57.0 63 60.3
Dinv37556 Davidia involucrata HOM05D001384 ORTHO05D001215 1.2e-06 56.2 61 60.7
Duzib133G0751 Durio zibethinus HOM05D001384 ORTHO05D001215 1.2e-06 56.2 65 58.5
Thhalv10001752m.g Eutrema salsugineum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 68 55.9
Gohir.A10G199650 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 70 60.0
Gohir.D11G099700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.2e-06 56.2 70 60.0
Gorai.007G105900 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.2e-06 56.2 70 60.0
Medtr8g099245 Medicago truncatula HOM05D001384 ORTHO05D001215 1.2e-06 56.2 66 51.5
HPP92_026774 Vanilla planifolia HOM05D001384 ORTHO05D001215 1.2e-06 56.2 72 62.5
Aa31LG1G27700 Aethionema arabicum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 63 55.6
Carub.0005s2833 Capsella rubella HOM05D001384 ORTHO05D001215 1.5e-06 55.8 63 52.4
ClCG01G002070 Citrullus lanatus HOM05D001384 ORTHO05D001215 1.5e-06 55.8 31 83.9
Dinv43894 Davidia involucrata HOM05D001384 ORTHO05D001215 1.5e-06 55.8 69 56.5
Gohir.A11G094700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 1.5e-06 55.8 70 70.0
Gorai.008G123500 Gossypium raimondii HOM05D001384 ORTHO05D001215 1.5e-06 55.8 59 62.7
Hma1.2p1_0384F.1_g141070 Hydrangea macrophylla HOM05D001384 ORTHO05D001215 1.5e-06 55.8 70 54.3
MBI06_g32761_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 1.5e-06 55.8 69 52.2
MD01G1076000 Malus domestica HOM05D001384 ORTHO05D001215 1.5e-06 55.8 35 77.1
Manes.02G013300 Manihot esculenta HOM05D001384 ORTHO05D001215 1.5e-06 55.8 65 58.5
Os01g0657000 Oryza sativa ssp. japonica HOM05D001384 ORTHO05D001215 1.5e-06 55.8 69 49.3
Prupe.2G183500 Prunus persica HOM05D001384 ORTHO05D001215 1.5e-06 55.8 35 77.1
EL10Ac3g05350 Beta vulgaris HOM05D001384 ORTHO05D001215 2.0e-06 55.5 57 61.4
BcaB01g03227 Brassica carinata HOM05D001384 ORTHO05D001215 2.0e-06 55.5 45 62.2
Carub.0008s1343 Capsella rubella HOM05D001384 ORTHO05D001215 2.0e-06 55.5 63 57.1
CARHR141610 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.0e-06 55.5 63 55.6
COL.COLO4_21727 Corchorus olitorius HOM05D001384 ORTHO05D001215 2.0e-06 55.5 66 68.2
Manes.14G018800 Manihot esculenta HOM05D001384 ORTHO05D001215 2.0e-06 55.5 55 56.4
Phvul.002G162600 Phaseolus vulgaris HOM05D001384 ORTHO05D001215 2.0e-06 55.5 55 54.5
Psat7g027760 Pisum sativum HOM05D001384 ORTHO05D001215 2.0e-06 55.5 66 48.5
Sed0021496 Sechium edule HOM05D001384 ORTHO05D001215 2.0e-06 55.5 35 80.0
Aa31LG3G9260 Aethionema arabicum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 56 58.9
A03p25570 Brassica napus HOM05D001384 ORTHO05D001215 2.6e-06 55.1 64 56.2
BraA03t11773Z Brassica rapa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 64 56.2
Carub.0004s2903 Capsella rubella HOM05D001384 ORTHO05D001215 2.6e-06 55.1 64 53.1
Carub.0006s2183 Capsella rubella HOM05D001384 ORTHO05D001215 2.6e-06 55.1 57 61.4
CARHR189480 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.6e-06 55.1 61 65.6
CARHR266300 Cardamine hirsuta HOM05D001384 ORTHO05D001215 2.6e-06 55.1 63 68.3
Cpa.g.sc194.9 Carica papaya HOM05D001384 ORTHO05D001215 2.6e-06 55.1 53 62.3
FAN01G1051 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 32 84.4
FAN03G0436 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 32 84.4
FAN10G1694 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 32 84.4
FAN10G3769 Fragaria x ananassa HOM05D001384 ORTHO05D001215 2.6e-06 55.1 32 84.4
MBI07_g20448_MAGBIO Magnolia biondii HOM05D001384 ORTHO05D001215 2.6e-06 55.1 68 52.9
Nitab4.5_0000223g0120 Nicotiana tabacum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 56 55.4
PGR031G3192 Punica granatum HOM05D001384 ORTHO05D001215 2.6e-06 55.1 34 79.4
TWI39G0811 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 2.6e-06 55.1 63 66.7
BcaC01g05082 Brassica carinata HOM05D001384 ORTHO05D001215 3.3e-06 54.7 63 52.4
Gohir.A11G023800 Gossypium hirsutum HOM05D001384 ORTHO05D001215 3.3e-06 54.7 67 61.2
Gorai.007G025300 Gossypium raimondii HOM05D001384 ORTHO05D001215 3.3e-06 54.7 67 61.2
Manes.06G156900 Manihot esculenta HOM05D001384 ORTHO05D001215 3.3e-06 54.7 58 56.9
Nitab4.5_0004161g0070 Nicotiana tabacum HOM05D001384 ORTHO05D001215 3.3e-06 54.7 56 55.4
Sp4g28370 Schrenkiella parvula HOM05D001384 ORTHO05D001215 3.3e-06 54.7 64 54.7
Atru.chr5.621 Acer truncatum HOM05D001384 ORTHO05D001215 4.4e-06 54.3 73 49.3
BcaB01g03229 Brassica carinata HOM05D001384 ORTHO05D001215 4.4e-06 54.3 64 53.1
CsaV3_5G002200 Cucumis sativus L. HOM05D001384 ORTHO05D001215 4.4e-06 54.3 31 80.6
Gohir.A11G210500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 4.4e-06 54.3 64 56.2
QL04p058637 Quercus lobata HOM05D001384 ORTHO05D001215 4.4e-06 54.3 51 74.5
Sabra02G0144100 Salix brachista HOM05D001384 ORTHO05D001215 4.4e-06 54.3 32 81.2
Sopen10g005520 Solanum pennellii HOM05D001384 ORTHO05D001215 4.4e-06 54.3 65 49.2
PGSC0003DMG400019380 Solanum tuberosum HOM05D001384 ORTHO05D001215 4.4e-06 54.3 65 50.8
THA.LOC104802055 Tarenaya hassleriana HOM05D001384 ORTHO05D001215 4.4e-06 54.3 56 55.4
BcaB01g03224 Brassica carinata HOM05D001384 ORTHO05D001215 5.7e-06 53.9 70 52.9
BcaC02g12698 Brassica carinata HOM05D001384 ORTHO05D001215 5.7e-06 53.9 70 52.9
Haze_15620 Corylus avellana HOM05D001384 ORTHO05D001215 5.7e-06 53.9 64 59.4
Gohir.A10G068700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.7e-06 53.9 70 57.1
Gohir.D08G132700 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.7e-06 53.9 36 72.2
Gohir.D11G023500 Gossypium hirsutum HOM05D001384 ORTHO05D001215 5.7e-06 53.9 67 55.2
Gorai.004G135600 Gossypium raimondii HOM05D001384 ORTHO05D001215 5.7e-06 53.9 36 72.2
Sc13g0009580 Simmondsia chinensis HOM05D001384 ORTHO05D001215 5.7e-06 53.9 57 71.9
Solyc10g011730.3 Solanum lycopersicum HOM05D001384 ORTHO05D001215 5.7e-06 53.9 65 49.2
TWI14G0223 Tripterygium wilfordii HOM05D001384 ORTHO05D001215 5.7e-06 53.9 63 66.7
GSVIVG01027049001 Vitis vinifera HOM05D001384 ORTHO05D001215 5.7e-06 53.9 32 81.2
AL8G27900 Arabidopsis lyrata HOM05D001384 ORTHO05D001215 7.5e-06 53.5 63 54.0
AT5G53250 Arabidopsis thaliana HOM05D001384 ORTHO05D001215 7.5e-06 53.5 63 54.0
BcaC01g05077 Brassica carinata HOM05D001384 ORTHO05D001215 7.5e-06 53.5 64 53.1
C03p30500 Brassica napus HOM05D001384 ORTHO05D001215 7.5e-06 53.5 64 53.1
CSS0003232 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 7.5e-06 53.5 73 58.9
Cfa012851 Carpinus fangiana HOM05D001384 ORTHO05D001215 7.5e-06 53.5 44 63.6
MELO3C034006.2 Cucumis melo HOM05D001384 ORTHO05D001215 7.5e-06 53.5 30 80.0
Duzib138G1328 Durio zibethinus HOM05D001384 ORTHO05D001215 7.5e-06 53.5 65 58.5
Duzib205G1630 Durio zibethinus HOM05D001384 ORTHO05D001215 7.5e-06 53.5 63 63.5
Nitab4.5_0002944g0160 Nicotiana tabacum HOM05D001384 ORTHO05D001215 7.5e-06 53.5 60 55.0
RcHm_v2.0_Chr1g0358781 Rosa chinensis HOM05D001384 ORTHO05D001215 7.5e-06 53.5 32 81.2
Sp5g01770 Schrenkiella parvula HOM05D001384 ORTHO05D001215 7.5e-06 53.5 32 81.2
BcaC03g14439 Brassica carinata HOM05D001384 ORTHO05D001215 9.7e-06 53.1 63 52.4
C02p18530 Brassica napus HOM05D001384 ORTHO05D001215 9.7e-06 53.1 63 52.4
BolC2t07993H Brassica oleracea HOM05D001384 ORTHO05D001215 9.7e-06 53.1 63 52.4
CSS0021424 Camellia sinensis var. sinensis HOM05D001384 ORTHO05D001215 9.7e-06 53.1 71 60.6
FAN06G2635 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.7e-06 53.1 31 83.9
FAN06G3780 Fragaria x ananassa HOM05D001384 ORTHO05D001215 9.7e-06 53.1 31 83.9
HanXRQChr04g0121001 Helianthus annuus HOM05D001384 ORTHO05D001215 9.7e-06 53.1 59 57.6
vmacro22519 Vaccinium macrocarpon HOM05D001384 ORTHO05D001215 9.7e-06 53.1 61 54.1


User provided reference genes

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